Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 0.0e+00 3802.7 1998 100.0
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 2.5e-215 754.2 1848 33.2
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 2.6e-159 568.2 1663 30.4
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 6.3e-150 537.0 1683 29.9
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 8.3e-150 536.6 1662 29.5
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 1.4e-149 535.8 1656 29.8
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 3.2e-149 534.6 1679 29.5
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 1.6e-148 532.3 1658 29.9
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 6.6e-147 526.9 1682 29.3
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 4.3e-146 524.2 2247 28.5
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 3.6e-145 521.2 1655 29.1
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 3.7e-142 511.1 1664 29.0
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 6.4e-142 510.4 2274 27.1
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 8.3e-142 510.0 1649 29.2
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 3.2e-141 508.1 2246 28.1
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 5.4e-141 507.3 1877 29.0
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 5.4e-141 507.3 1661 29.8
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 9.2e-141 506.5 1662 28.9
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 3.5e-140 504.6 1678 29.9
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 4.6e-140 504.2 1648 28.9
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 1.7e-139 502.3 1675 28.6
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 6.6e-139 500.4 1666 28.6
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 1.1e-138 499.6 1680 28.6
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 2.5e-138 498.4 1654 27.9
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 7.3e-138 496.9 1669 28.6
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 9.5e-138 496.5 2242 28.0
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 2.1e-137 495.4 2223 27.4
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 2.8e-137 495.0 2255 27.5
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 4.7e-137 494.2 1638 29.2
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 1.1e-136 493.0 1643 28.2
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 1.1e-136 493.0 2245 27.5
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 4.0e-136 491.1 2232 27.3
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 5.2e-136 490.7 1639 29.7
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 1.2e-135 489.6 1670 28.6
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 2.6e-135 488.4 2246 27.1
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.4e-135 488.0 2112 28.0
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 9.8e-135 486.5 1655 27.9
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 1.7e-134 485.7 1651 28.0
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 3.7e-134 484.6 2199 28.1
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 4.9e-134 484.2 2275 27.3
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 8.3e-134 483.4 1685 28.2
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 1.1e-133 483.0 1655 28.4
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 1.9e-133 482.3 2230 27.0
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 1.9e-133 482.3 2195 27.4
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 2.4e-133 481.9 1659 27.8
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 5.4e-133 480.7 2253 26.8
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 5.4e-133 480.7 1701 28.6
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 7.1e-133 480.3 2212 27.4
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 7.1e-133 480.3 2233 27.6
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 9.2e-133 479.9 1690 28.8
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 1.2e-132 479.6 1633 29.0
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 1.6e-132 479.2 2178 27.6
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 1.6e-132 479.2 1659 28.1
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 2.1e-132 478.8 2269 27.3
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 2.7e-132 478.4 2183 27.8
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 1.3e-131 476.1 1641 29.1
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 2.3e-131 475.3 1632 29.5
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 6.6e-131 473.8 1376 29.5
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.9e-130 472.2 1376 29.4
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 9.5e-130 469.9 1643 27.8
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 1.2e-129 469.5 2077 28.0
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 1.6e-129 469.2 2214 28.0
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 3.6e-129 468.0 1634 28.2
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 6.2e-129 467.2 2269 27.1
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 8.1e-129 466.8 2199 27.4
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 8.1e-129 466.8 2260 26.6
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 8.1e-129 466.8 2249 26.7
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 1.2e-127 463.0 2220 27.6
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 7.6e-127 460.3 1659 27.6
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 7.6e-127 460.3 2142 26.8
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 9.9e-127 459.9 1666 28.3
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 9.9e-127 459.9 2314 26.8
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 1.7e-126 459.1 1626 28.0
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 2.9e-126 458.4 2285 26.6
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 4.9e-126 457.6 2207 27.1
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 6.4e-126 457.2 1362 29.2
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 6.4e-126 457.2 1643 28.0
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 7.1e-125 453.8 1651 27.3
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 1.6e-124 452.6 1650 27.3
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 6.0e-124 450.7 1586 28.8
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 8.6e-123 446.8 2123 26.9
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 2.5e-122 445.3 2203 26.4
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 3.3e-122 444.9 2319 26.4
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 1.5e-119 436.0 1672 27.3
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 1.9e-117 429.1 2270 25.7
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 3.2e-117 428.3 1728 27.7
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 6.0e-116 424.1 1661 26.9
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 4.8e-113 414.5 1898 27.0
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 6.4e-110 404.1 1650 26.2
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 8.7e-107 393.7 1591 26.3
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 5.6e-106 391.0 1415 27.6
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 1.3e-105 389.8 1998 27.0
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 2.8e-105 388.7 1984 26.8
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 3.1e-104 385.2 1869 26.4
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 1.4e-96 359.8 1153 28.2
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 1.3e-94 353.2 1857 24.8
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 2.2e-78 299.3 1408 28.3
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 2.9e-78 298.9 2137 24.3
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 2.4e-72 279.3 715 30.8
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 1.3e-65 256.9 1494 26.4
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 4.7e-60 238.4 1133 25.3
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 4.8e-57 228.4 818 29.2
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 2.3e-51 209.5 699 27.9
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.4e-48 200.3 486 32.9
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 1.4e-48 200.3 762 27.0
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 1.2e-47 197.2 1382 25.5
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 4.7e-44 185.3 1199 23.9
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 6.1e-44 184.9 1209 25.6
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.6e-42 179.5 825 26.4
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 2.0e-39 169.9 421 30.9
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 1.5e-26 127.1 270 35.9
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 4.4e-26 125.6 255 32.2
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 1.9e-24 120.2 117 52.1
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.4e-24 119.8 121 52.1
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.2e-24 119.4 121 49.6
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 2.3e-22 113.2 332 29.5
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 3.9e-22 112.5 999 25.1
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 3.7e-17 95.9 130 38.5
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.2e-15 90.9 588 22.8
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 2.1e-15 90.1 211 28.9
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.3e-13 82.8 109 42.2
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 2.6e-10 73.2 102 47.1
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 2.6e-10 73.2 102 47.1
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 3.4e-10 72.8 113 43.4
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 4.9e-09 68.9 229 31.4
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 2.1e-07 63.5 128 32.0
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 4.6e-07 62.4 102 39.2
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 1.7e-06 60.5 65 46.2
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 5.1e-06 58.9 134 30.6


User provided reference genes

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