Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 0.0e+00 1194.5 600 100.0
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 0.0e+00 1087.4 600 89.0
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 7.0e-254 880.6 602 72.3
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 3.1e-241 838.6 603 68.2
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 5.8e-240 834.3 602 68.3
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 5.8e-240 834.3 601 69.2
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 2.2e-239 832.4 592 69.1
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 2.4e-238 828.9 592 69.3
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 5.4e-238 827.8 603 68.3
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 3.9e-236 821.6 597 68.7
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 3.9e-236 821.6 601 68.2
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 6.6e-236 820.8 600 67.7
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 1.5e-235 819.7 605 67.9
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 3.6e-234 815.1 601 68.1
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 4.7e-234 814.7 605 68.1
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 3.1e-233 812.0 600 68.8
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 8.9e-233 810.4 605 67.6
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 4.4e-232 808.1 606 67.8
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 2.2e-231 805.8 603 68.5
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 3.8e-231 805.1 605 67.3
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 8.4e-231 803.9 600 67.2
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 1.4e-230 803.1 601 65.7
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 1.4e-230 803.1 605 67.1
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 4.1e-230 801.6 609 66.7
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 5.4e-230 801.2 598 65.1
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 5.4e-230 801.2 617 66.0
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 7.1e-230 800.8 601 65.4
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 7.1e-230 800.8 600 67.3
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 1.6e-229 799.7 606 66.0
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 3.5e-229 798.5 602 65.9
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 6.0e-229 797.7 600 67.2
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 6.0e-229 797.7 609 66.5
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 1.0e-228 797.0 609 66.3
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.7e-228 796.2 600 66.7
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 3.0e-228 795.4 600 66.8
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 3.9e-228 795.0 602 65.0
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 3.9e-228 795.0 609 66.3
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 5.1e-228 794.7 597 66.2
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 5.1e-228 794.7 604 66.1
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 8.7e-228 793.9 605 66.1
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 1.1e-227 793.5 603 68.0
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.5e-227 793.1 604 68.0
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 4.3e-227 791.6 598 65.6
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 5.6e-227 791.2 609 66.3
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 9.6e-227 790.4 602 66.6
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 9.6e-227 790.4 609 65.4
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 9.6e-227 790.4 608 66.3
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 9.6e-227 790.4 604 66.4
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 1.6e-226 789.6 610 65.1
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 1.6e-226 789.6 602 65.6
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 2.1e-226 789.3 610 65.1
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 4.7e-226 788.1 602 66.3
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 4.7e-226 788.1 602 66.3
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 6.2e-226 787.7 602 65.9
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 8.1e-226 787.3 602 66.3
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 1.1e-225 786.9 612 64.9
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 1.8e-225 786.2 602 65.4
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 6.9e-225 784.3 602 65.3
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 9.0e-225 783.9 602 65.9
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 2.0e-224 782.7 605 65.1
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 1.3e-223 780.0 609 63.9
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 1.7e-223 779.6 627 64.1
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 2.2e-223 779.2 603 64.2
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 3.8e-223 778.5 602 65.0
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 3.8e-223 778.5 585 68.0
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 4.9e-223 778.1 614 64.2
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.1e-222 776.9 614 64.2
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 1.1e-222 776.9 617 63.4
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 3.2e-222 775.4 614 64.0
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 4.2e-222 775.0 607 64.1
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 4.2e-222 775.0 614 63.8
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 4.6e-221 771.5 629 64.2
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.0e-220 770.4 611 65.6
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 3.9e-220 768.5 604 65.1
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 5.1e-220 768.1 580 66.9
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 1.1e-219 766.9 607 64.9
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.5e-219 766.5 614 64.8
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 2.5e-219 765.8 582 66.5
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 5.6e-219 764.6 611 62.5
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-218 763.5 602 65.4
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 6.2e-218 761.1 601 63.7
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 6.2e-218 761.1 601 62.7
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 9.0e-217 757.3 602 65.1
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.0e-216 756.1 584 66.4
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 7.6e-216 754.2 633 62.6
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 1.3e-215 753.4 605 63.3
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 3.2e-214 748.8 513 71.2
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 2.1e-213 746.1 606 63.0
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 3.9e-212 741.9 602 64.0
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 2.5e-211 739.2 602 62.6
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 4.3e-211 738.4 634 61.2
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 4.3e-211 738.4 733 54.4
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 7.4e-211 737.6 605 61.8
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 7.4e-211 737.6 617 61.4
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 9.6e-211 737.3 614 61.4
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.1e-210 736.1 602 63.1
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 1.1e-209 733.8 607 61.6
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 3.1e-209 732.3 602 62.6
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 1.2e-208 730.3 554 66.1
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.9e-206 723.0 634 59.5
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 7.1e-206 721.1 533 68.7
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 6.0e-205 718.0 589 62.5
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 3.3e-203 712.2 603 61.5
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 2.1e-202 709.5 582 62.4
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 3.7e-202 708.8 515 69.1
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 6.2e-202 708.0 598 61.7
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 6.5e-199 698.0 521 66.8
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.1e-198 697.2 603 59.4
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 1.4e-198 696.8 620 58.2
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 1.9e-198 696.4 531 65.7
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.1e-195 687.2 605 58.7
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 4.3e-195 685.3 541 65.2
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 9.1e-185 651.0 581 58.9
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 7.7e-184 647.9 591 56.0
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 2.1e-181 639.8 463 70.4
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 6.7e-180 634.8 491 67.2
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.8e-178 629.4 530 60.4
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 7.0e-177 624.8 609 56.0
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 4.2e-174 615.5 795 46.8
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 1.3e-162 577.4 580 54.3
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.2e-157 560.8 426 67.6
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.7e-157 558.9 451 63.9
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 4.5e-152 542.3 617 49.8
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 8.3e-146 521.5 593 46.4
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 1.4e-145 520.8 613 45.4
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 2.5e-126 456.8 798 38.3
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 4.3e-126 456.1 508 50.8
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 7.8e-120 435.3 330 66.1
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.1e-118 431.4 418 55.5
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 2.1e-117 427.2 386 57.3
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.9e-113 414.1 499 48.9
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 2.4e-113 413.7 417 54.0
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.3e-110 402.9 284 71.5
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.1e-101 374.0 257 71.2
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 5.3e-100 369.4 287 66.2
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 1.2e-99 368.2 317 61.5
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 6.0e-96 355.9 259 67.6
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 7.9e-96 355.5 598 37.6
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.5e-94 350.5 450 44.4
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.6e-88 331.3 307 57.7
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.1e-81 308.5 189 77.2
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.5e-74 282.7 175 76.0
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.5e-73 280.8 268 53.4
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.6e-72 276.6 176 76.7
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 7.2e-65 252.7 171 73.7
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 6.7e-63 246.1 170 71.2
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 8.8e-63 245.7 153 77.8
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 1.5e-62 245.0 154 76.0
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.0e-62 244.6 248 51.2
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 9.7e-62 242.3 190 66.8
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 4.4e-54 216.9 209 50.7
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 2.6e-51 207.6 211 49.3
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 2.2e-50 204.5 257 46.3
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 6.5e-50 203.0 209 47.8
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.6e-48 197.2 147 63.9
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 2.0e-46 191.4 130 74.6
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.4e-44 185.3 120 72.5
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 3.1e-44 184.1 225 48.0
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.1e-44 184.1 183 52.5
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 5.7e-38 163.3 125 62.4
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 3.7e-37 160.6 215 45.6
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 1.8e-31 141.7 125 54.4
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 8.9e-31 139.4 125 54.4
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 3.4e-30 137.5 144 52.8
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 7.5e-30 136.3 124 55.6
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 6.3e-29 133.3 125 54.4
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 1.4e-28 132.1 125 53.6
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 7.0e-28 129.8 183 45.4
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 1.4e-23 115.5 85 63.5
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 6.8e-23 113.2 70 72.9
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 2.9e-21 107.8 66 74.2
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 9.2e-20 102.8 90 58.9
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.7e-19 101.3 127 46.5
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 3.9e-18 97.4 78 56.4
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 2.3e-15 88.2 87 49.4
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.2e-13 81.6 60 60.0
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 5.4e-12 77.0 142 35.2
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 7.3e-09 66.6 101 37.6
Lsat_1_v5_gn_4_30320 Lactuca sativa HOM05D003829 ORTHO05D015515 2.8e-08 64.7 38 78.9
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 4.0e-07 60.8 47 59.6
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 8.9e-07 59.7 66 40.9
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 9.9e-06 56.2 51 56.9


User provided reference genes

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