Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 2.7e-149 531.9 269 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 2.9e-50 203.0 235 48.5
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 1.5e-46 190.7 230 44.8
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 8.0e-40 168.3 222 44.1
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.5e-38 164.1 243 40.7
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 1.3e-37 161.0 220 44.1
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 1.7e-37 160.6 220 45.5
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 2.2e-37 160.2 246 40.2
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 2.2e-37 160.2 244 41.4
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 2.8e-37 159.8 197 44.7
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 3.7e-37 159.5 253 40.7
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 3.7e-37 159.5 222 44.6
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 3.7e-37 159.5 222 44.6
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 1.8e-36 157.1 230 43.5
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 2.4e-36 156.8 220 44.5
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 9.1e-36 154.8 218 45.0
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 1.6e-35 154.1 246 39.4
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 2.0e-35 153.7 214 44.9
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.0e-35 153.7 157 49.7
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.7e-35 153.3 157 49.7
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 2.3e-34 150.2 217 41.5
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 3.8e-34 149.4 216 42.1
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 3.8e-34 149.4 220 42.3
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 8.6e-34 148.3 250 37.2
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 1.1e-33 147.9 240 41.2
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 1.1e-33 147.9 193 41.5
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 1.1e-33 147.9 263 36.5
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.1e-33 147.9 224 39.7
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.1e-33 147.9 232 43.1
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.1e-33 147.9 218 41.7
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 1.1e-33 147.9 246 39.4
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 1.1e-33 147.9 211 42.2
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 1.5e-33 147.5 248 40.7
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 1.5e-33 147.5 232 40.5
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 1.9e-33 147.1 221 41.2
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 2.5e-33 146.7 253 38.7
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 2.5e-33 146.7 209 42.6
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 3.2e-33 146.4 220 40.9
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 4.2e-33 146.0 209 42.6
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 5.5e-33 145.6 192 42.2
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 7.2e-33 145.2 250 40.0
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 9.5e-33 144.8 232 41.4
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 9.5e-33 144.8 207 43.5
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 1.2e-32 144.4 223 41.7
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 1.2e-32 144.4 220 40.0
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 1.2e-32 144.4 192 42.2
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 2.8e-32 143.3 208 41.8
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 2.8e-32 143.3 253 38.3
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 3.6e-32 142.9 247 40.1
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 4.7e-32 142.5 228 41.2
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 4.7e-32 142.5 192 41.1
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 6.1e-32 142.1 214 42.1
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 1.4e-31 141.0 201 40.8
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 2.3e-31 140.2 227 40.1
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 3.0e-31 139.8 220 40.5
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 3.0e-31 139.8 253 37.9
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 4.0e-31 139.4 219 42.0
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 1.2e-30 137.9 205 41.0
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 1.5e-30 137.5 200 43.0
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 1.5e-30 137.5 275 34.5
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 2.0e-30 137.1 193 42.5
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 2.6e-30 136.7 242 37.6
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 4.4e-30 136.0 241 38.2
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 5.7e-30 135.6 225 39.1
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 7.5e-30 135.2 191 42.9
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 1.3e-29 134.4 226 39.4
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.3e-29 134.4 220 40.0
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 1.7e-29 134.0 224 39.3
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 2.2e-29 133.7 246 37.8
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 2.2e-29 133.7 226 39.4
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 2.8e-29 133.3 240 38.3
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 2.8e-29 133.3 242 36.4
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 3.7e-29 132.9 250 36.4
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 4.9e-29 132.5 233 38.2
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 6.3e-29 132.1 227 38.8
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 1.1e-28 131.3 240 37.9
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 4.1e-28 129.4 244 38.1
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 4.1e-28 129.4 231 36.8
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 5.4e-28 129.0 217 39.6
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 5.4e-28 129.0 235 37.9
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 5.4e-28 129.0 213 37.1
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 7.0e-28 128.6 191 40.8
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 9.2e-28 128.3 256 35.5
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.6e-27 127.5 201 37.8
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 2.7e-27 126.7 178 42.7
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 5.0e-26 122.5 232 37.9
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.5e-25 120.9 190 41.1
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 1.9e-25 120.6 110 53.6
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 1.0e-23 114.8 188 38.3
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 1.4e-23 114.4 207 39.1
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 1.4e-23 114.4 183 39.9
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 2.3e-23 113.6 102 55.9
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 5.2e-23 112.5 227 33.9
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 5.2e-23 112.5 212 38.2
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 6.8e-23 112.1 204 36.3
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 2.0e-22 110.5 203 38.4
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 1.3e-21 107.8 175 40.6
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 1.7e-21 107.5 105 52.4
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 6.4e-21 105.5 132 42.4
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 6.4e-21 105.5 111 47.7
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 8.3e-21 105.1 208 35.6
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 2.0e-19 100.5 188 35.1
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 1.7e-18 97.4 189 33.3
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 2.5e-17 93.6 101 47.5
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 4.3e-17 92.8 143 35.7
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 3.6e-16 89.7 191 34.0
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 4.7e-16 89.4 218 32.6
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.4e-15 87.8 171 34.5
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.4e-15 87.8 130 39.2
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 2.3e-15 87.0 104 42.3
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 1.2e-14 84.7 143 38.5
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.0e-14 84.0 106 41.5
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 4.4e-14 82.8 196 31.6
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 1.4e-12 77.8 212 27.4
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 1.4e-12 77.8 129 38.0
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.7e-11 73.6 163 31.3
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 1.3e-10 71.2 70 48.6
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 2.3e-10 70.5 64 56.2
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 2.3e-10 70.5 64 56.2
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 3.0e-10 70.1 169 32.0
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 3.3e-09 66.6 183 30.1
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 4.3e-09 66.2 189 32.3
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 5.6e-09 65.9 135 32.6
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 1.2e-08 64.7 171 31.0
Cre03.g184050 Chlamydomonas reinhardtii HOM05D005876 ORTHO05D007326 2.8e-08 63.5 204 24.5
Pp3c19_14730 Physcomitrium patens HOM05D005876 ORTHO05D007326 4.4e-06 56.2 44 54.5


User provided reference genes

Program Settings