Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.9e-257 891.3 431 100.0
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.4e-187 659.8 351 87.7
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.9e-161 572.4 352 76.4
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 3.8e-161 572.0 433 67.0
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 6.8e-158 561.2 345 75.9
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 4.4e-157 558.5 355 74.4
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.7e-156 556.6 370 73.0
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 2.8e-156 555.8 365 72.9
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 2.8e-156 555.8 370 72.2
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 8.3e-156 554.3 365 72.6
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.4e-155 553.5 344 75.6
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.8e-155 553.1 370 71.6
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 2.4e-155 552.7 353 73.4
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.1e-155 552.4 370 72.2
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 3.1e-155 552.4 342 75.1
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 3.1e-155 552.4 346 74.6
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 3.1e-155 552.4 354 73.7
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 7.0e-155 551.2 344 75.6
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 7.0e-155 551.2 344 75.6
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 9.2e-155 550.8 367 72.2
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.6e-154 550.1 370 71.6
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.6e-154 550.1 342 74.6
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 2.0e-154 549.7 342 74.6
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.7e-154 549.3 344 74.1
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 2.7e-154 549.3 346 74.9
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 3.5e-154 548.9 344 74.4
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 4.5e-154 548.5 367 71.9
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 5.9e-154 548.1 347 74.4
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 7.8e-154 547.7 354 72.9
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 7.8e-154 547.7 347 74.1
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 7.8e-154 547.7 419 64.0
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.0e-153 547.4 344 74.4
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 1.3e-153 547.0 345 74.2
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.7e-153 546.6 366 71.9
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.7e-153 546.6 366 71.9
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 2.3e-153 546.2 342 74.3
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 3.9e-153 545.4 366 71.6
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 3.9e-153 545.4 342 74.3
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 3.9e-153 545.4 347 73.5
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 5.0e-153 545.0 375 70.7
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 5.0e-153 545.0 345 74.8
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 6.6e-153 544.7 361 72.6
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 6.6e-153 544.7 347 73.5
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 6.6e-153 544.7 344 75.0
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 8.6e-153 544.3 342 74.9
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 8.6e-153 544.3 360 71.4
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.1e-152 543.9 345 73.6
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.5e-152 543.5 346 74.3
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.5e-152 543.5 352 72.4
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.5e-152 543.5 352 73.9
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.9e-152 543.1 360 71.1
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.9e-152 543.1 354 72.9
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.9e-152 543.1 352 73.6
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 4.3e-152 542.0 346 74.6
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 4.3e-152 542.0 350 72.6
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 4.3e-152 542.0 303 80.9
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 5.6e-152 541.6 345 74.5
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 7.3e-152 541.2 384 68.2
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 9.5e-152 540.8 344 74.1
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 9.5e-152 540.8 342 73.7
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 9.5e-152 540.8 345 73.6
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 9.5e-152 540.8 402 66.4
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.2e-151 540.4 349 72.8
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.6e-151 540.0 365 70.1
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.6e-151 540.0 360 71.7
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 2.1e-151 539.7 343 73.8
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.1e-151 539.7 345 73.3
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.8e-151 539.3 347 73.2
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 3.6e-151 538.9 361 70.9
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 6.1e-151 538.1 342 73.4
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 8.0e-151 537.7 341 74.2
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.0e-151 537.7 341 74.2
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.0e-150 537.3 341 73.9
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.0e-150 537.3 341 74.2
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.4e-150 537.0 343 74.9
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.4e-150 537.0 362 71.0
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 1.8e-150 536.6 345 73.3
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.8e-150 536.6 341 73.9
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 2.3e-150 536.2 347 72.9
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 3.1e-150 535.8 348 73.0
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 5.2e-150 535.0 341 74.2
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 6.8e-150 534.6 363 69.1
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 2.6e-149 532.7 405 65.4
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 4.4e-149 531.9 347 72.6
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 5.8e-149 531.6 346 70.8
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 5.8e-149 531.6 345 72.8
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 7.5e-149 531.2 347 72.0
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 7.5e-149 531.2 341 73.3
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 7.5e-149 531.2 343 74.1
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 9.8e-149 530.8 345 72.8
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 2.9e-148 529.3 344 73.3
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.7e-148 528.9 330 74.5
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 4.9e-148 528.5 371 69.5
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 4.9e-148 528.5 351 71.8
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 4.9e-148 528.5 384 66.7
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 6.4e-148 528.1 346 72.0
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.1e-147 527.3 366 68.0
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.9e-147 526.6 341 72.7
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.2e-146 523.9 377 67.6
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.6e-146 523.5 306 77.8
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 2.0e-146 523.1 346 71.4
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 2.7e-146 522.7 349 70.5
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 6.0e-146 521.5 350 71.1
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.6e-145 518.1 345 71.0
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-144 517.3 304 78.0
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 5.6e-144 515.0 306 77.1
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 2.1e-143 513.1 346 71.7
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 2.8e-143 512.7 458 57.4
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 3.6e-143 512.3 346 72.0
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.1e-142 509.2 321 74.5
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 9.8e-141 504.2 392 64.5
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 4.9e-140 501.9 322 73.9
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.0e-137 494.2 324 71.6
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.0e-137 494.2 343 68.2
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 5.6e-136 488.4 352 67.6
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.6e-135 485.7 344 67.4
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.1e-134 484.2 350 68.3
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 3.4e-133 479.2 311 72.3
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 4.9e-132 475.3 393 59.8
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 6.4e-132 474.9 343 65.3
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.6e-130 470.3 343 67.3
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.3e-129 467.2 499 49.7
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 4.7e-127 458.8 551 46.3
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 6.2e-127 458.4 562 46.1
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 2.5e-120 436.4 245 80.0
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 5.1e-113 412.1 348 58.9
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 7.3e-112 408.3 284 67.6
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.6e-111 407.1 341 61.3
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.0e-105 387.9 343 58.3
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 6.7e-97 358.6 252 69.0
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.5e-96 356.7 271 64.2
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 3.2e-91 339.7 245 68.2
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.0e-89 334.7 210 73.3
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 2.5e-88 330.1 286 54.2
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.7e-80 301.6 221 65.6
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.0e-76 289.3 211 64.9
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 3.5e-69 266.5 313 46.0
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.9e-68 263.5 194 67.5
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.8e-65 254.2 348 40.8
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.9e-65 253.1 330 42.1
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 9.7e-64 248.4 470 34.0
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.1e-62 243.0 385 37.9
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 5.5e-59 232.6 314 39.8
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 4.0e-57 226.5 125 80.8
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.0e-56 224.2 331 40.8
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 2.2e-47 194.1 246 42.3
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 3.5e-45 186.8 183 54.6
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 8.9e-41 172.2 119 69.7
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 2.1e-34 151.0 164 49.4
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 1.1e-22 112.1 96 59.4
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 1.4e-22 111.7 56 85.7
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.5e-16 91.7 68 70.6
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 1.7e-15 88.2 47 72.3
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.4e-14 84.3 97 50.5
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 1.0e-12 79.0 48 68.8
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 4.7e-10 70.1 40 72.5
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 5.8e-08 63.2 67 47.8
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 7.6e-08 62.8 108 37.0
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 1.7e-07 61.6 29 79.3


User provided reference genes

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