Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_3460 Physcomitrium patens HOM05D001403 ORTHO05D310672 2.3e-44 181.8 89 100.0
Pp3c21_3550 Physcomitrium patens HOM05D001403 ORTHO05D311031 2.7e-24 115.2 58 100.0
Pp3c21_3560 Physcomitrium patens HOM05D001403 ORTHO05D316754 2.7e-24 115.2 58 100.0
Pp3c21_3620 Physcomitrium patens HOM05D001403 ORTHO05D309761 5.9e-24 114.0 57 100.0
Pp3c2_38020 Physcomitrium patens HOM05D001403 ORTHO05D001313 6.3e-10 67.4 61 59.0
Pp3c11_9120 Physcomitrium patens HOM05D001403 ORTHO05D001313 1.2e-08 63.2 61 54.1
Zm00001eb103580 Zea mays HOM05D001403 ORTHO05D001313 1.6e-08 62.8 62 53.2
Mapoly0007s0110 Marchantia polymorpha HOM05D001403 ORTHO05D001313 3.5e-08 61.6 62 51.6
Pp3c1_9830 Physcomitrium patens HOM05D001403 ORTHO05D001313 5.9e-08 60.8 57 56.1
MSTRG.5428 Avicennia marina HOM05D001403 ORTHO05D001313 7.8e-08 60.5 57 57.9
Zm00001eb319770 Zea mays HOM05D001403 ORTHO05D001313 7.8e-08 60.5 62 51.6
Rhsim11G0187700 Rhododendron simsii HOM05D001403 ORTHO05D001313 1.0e-07 60.1 57 57.9
vmacro02248 Vaccinium macrocarpon HOM05D001403 ORTHO05D001313 1.0e-07 60.1 57 57.9
Manes.04G078300 Manihot esculenta HOM05D001403 ORTHO05D001313 1.3e-07 59.7 62 53.2
PGR142G4237 Punica granatum HOM05D001403 ORTHO05D001313 1.3e-07 59.7 62 51.6
Sed0004870 Sechium edule HOM05D001403 ORTHO05D001313 1.3e-07 59.7 62 51.6
THA.LOC104804100 Tarenaya hassleriana HOM05D001403 ORTHO05D001313 1.3e-07 59.7 58 53.4
CDE05G3181 Ceratophyllum demersum HOM05D001403 ORTHO05D001313 1.7e-07 59.3 62 51.6
ClCG02G011400 Citrullus lanatus HOM05D001403 ORTHO05D001313 1.7e-07 59.3 62 51.6
Gohir.A04G123100 Gossypium hirsutum HOM05D001403 ORTHO05D001313 1.7e-07 59.3 57 56.1
Gohir.D04G165150 Gossypium hirsutum HOM05D001403 ORTHO05D001313 1.7e-07 59.3 57 56.1
Gorai.012G153600 Gossypium raimondii HOM05D001403 ORTHO05D001313 1.7e-07 59.3 57 56.1
Nn1g05899 Nelumbo nucifera HOM05D001403 ORTHO05D001313 1.7e-07 59.3 57 56.1
Rhsim05G0063200 Rhododendron simsii HOM05D001403 ORTHO05D001313 1.7e-07 59.3 57 56.1
Actinidia27839 Actinidia chinensis HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
Aa31LG7G15520 Aethionema arabicum HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
BcaB06g29646 Brassica carinata HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
BcaB08g34967 Brassica carinata HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
A04p15940 Brassica napus HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
A09p58480 Brassica napus HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
C04p50400 Brassica napus HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
BolC4t26638H Brassica oleracea HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
BraA04t17227Z Brassica rapa HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
CSS0001105 Camellia sinensis var. sinensis HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
CARHR112020 Cardamine hirsuta HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
CDE05G1618 Ceratophyllum demersum HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
Cc02_g16540 Coffea canephora HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
DCAR_003699 Daucus carota HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
Thhalv10000249m.g Eutrema salsugineum HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
Manes.11G089900 Manihot esculenta HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
PSO541G3545 Papaver somniferum HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
PSO675G6266 Papaver somniferum HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
Potri.004G168000 Populus trichocarpa HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
Sabra04G0112600 Salix brachista HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
SalBow3G3299 Salvia bowleyana HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
Sp4g00320 Schrenkiella parvula HOM05D001403 ORTHO05D001313 2.3e-07 58.9 57 56.1
TAR376G1161 Trochodendron aralioides HOM05D001403 ORTHO05D001313 2.3e-07 58.9 62 51.6
Actinidia32085 Actinidia chinensis HOM05D001403 ORTHO05D001313 2.9e-07 58.5 57 54.4
CSS0046841 Camellia sinensis var. sinensis HOM05D001403 ORTHO05D001313 2.9e-07 58.5 57 54.4
Duzib132G0941 Durio zibethinus HOM05D001403 ORTHO05D001313 2.9e-07 58.5 57 54.4
Gohir.D01G155700 Gossypium hirsutum HOM05D001403 ORTHO05D001313 2.9e-07 58.5 57 54.4
Gorai.002G192900 Gossypium raimondii HOM05D001403 ORTHO05D001313 2.9e-07 58.5 57 54.4
QL11p047522 Quercus lobata HOM05D001403 ORTHO05D001313 2.9e-07 58.5 56 55.4
Thecc.02G067100 Theobroma cacao HOM05D001403 ORTHO05D001313 2.9e-07 58.5 57 56.1
Ciclev10028924m.g Citrus clementina HOM05D001403 ORTHO05D001313 3.9e-07 58.2 57 54.4
Mapoly0007s0011 Marchantia polymorpha HOM05D001403 ORTHO05D001313 3.9e-07 58.2 56 55.4
GSVIVG01024086001 Vitis vinifera HOM05D001403 ORTHO05D001313 3.9e-07 58.2 57 54.4
Ah.01g009200 Amaranthus hybridus HOM05D001403 ORTHO05D001313 5.0e-07 57.8 57 54.4
Ah.01g009210 Amaranthus hybridus HOM05D001403 ORTHO05D001313 5.0e-07 57.8 57 54.4
EL10Ac9g21443 Beta vulgaris HOM05D001403 ORTHO05D001313 5.0e-07 57.8 57 54.4
AUR62010098 Chenopodium quinoa HOM05D001403 ORTHO05D001313 5.0e-07 57.8 57 54.4
AUR62013094 Chenopodium quinoa HOM05D001403 ORTHO05D001313 5.0e-07 57.8 57 54.4
COL.COLO4_17255 Corchorus olitorius HOM05D001403 ORTHO05D001313 5.0e-07 57.8 57 54.4
Migut.B00166 Erythranthe guttata HOM05D001403 ORTHO05D001313 5.0e-07 57.8 57 54.4
Glyma.13G146200 Glycine max HOM05D001403 ORTHO05D001313 5.0e-07 57.8 58 55.2
MBI05_g33716_MAGBIO Magnolia biondii HOM05D001403 ORTHO05D001313 5.0e-07 57.8 57 54.4
Sabra09G0099000 Salix brachista HOM05D001403 ORTHO05D001313 5.0e-07 57.8 57 54.4
Hund06403 Selenicereus undatus HOM05D001403 ORTHO05D001313 5.0e-07 57.8 57 54.4
Sc18g0006660 Simmondsia chinensis HOM05D001403 ORTHO05D001313 5.0e-07 57.8 57 54.4
BcaC07g41171 Brassica carinata HOM05D001403 ORTHO05D001313 6.6e-07 57.4 57 54.4
C08p41780 Brassica napus HOM05D001403 ORTHO05D001313 6.6e-07 57.4 57 54.4
BraA09t41235Z Brassica rapa HOM05D001403 ORTHO05D001313 6.6e-07 57.4 57 54.4
Eucgr.I01374 Eucalyptus grandis HOM05D001403 ORTHO05D001313 6.6e-07 57.4 57 54.4
Peaxi162Scf00538g00523 Petunia axillaris HOM05D001403 ORTHO05D001313 6.6e-07 57.4 62 50.0
TPR.G32799 Trifolium pratense HOM05D001403 ORTHO05D001313 6.6e-07 57.4 57 56.1
Atru.chr5.3225 Acer truncatum HOM05D001403 ORTHO05D001313 8.6e-07 57.0 57 56.1
Aqoxy6G02204 Aquilegia oxysepala HOM05D001403 ORTHO05D001313 8.6e-07 57.0 57 54.4
MELO3C020780.2 Cucumis melo HOM05D001403 ORTHO05D001313 8.6e-07 57.0 57 54.4
Gohir.A01G163600 Gossypium hirsutum HOM05D001403 ORTHO05D001313 8.6e-07 57.0 57 52.6
Nn5g30138 Nelumbo nucifera HOM05D001403 ORTHO05D001313 8.6e-07 57.0 57 54.4
Peaxi162Scf00362g01044 Petunia axillaris HOM05D001403 ORTHO05D001313 8.6e-07 57.0 57 54.4
Sed0000953 Sechium edule HOM05D001403 ORTHO05D001313 8.6e-07 57.0 62 46.8
SGA_v2.0_scaffold32G13234 Striga asiatica HOM05D001403 ORTHO05D001313 8.6e-07 57.0 57 54.4
TWI79G0193 Tripterygium wilfordii HOM05D001403 ORTHO05D001313 8.6e-07 57.0 57 54.4
Nitab4.5_0010816g0020 Nicotiana tabacum HOM05D001403 ORTHO05D001313 1.1e-06 56.6 57 52.6
Potri.009G129500 Populus trichocarpa HOM05D001403 ORTHO05D001313 1.1e-06 56.6 57 54.4
Prupe.8G160500 Prunus persica HOM05D001403 ORTHO05D001313 1.1e-06 56.6 62 50.0
FvH4_2g02030 Fragaria vesca HOM05D001403 ORTHO05D001313 1.5e-06 56.2 57 56.1
FAN15G2532 Fragaria x ananassa HOM05D001403 ORTHO05D001313 1.5e-06 56.2 57 56.1
FAN20G2773 Fragaria x ananassa HOM05D001403 ORTHO05D001313 1.5e-06 56.2 57 56.1
FAN24G1473 Fragaria x ananassa HOM05D001403 ORTHO05D001313 1.5e-06 56.2 57 56.1
FAN27G1589 Fragaria x ananassa HOM05D001403 ORTHO05D001313 1.5e-06 56.2 57 56.1
RcHm_v2.0_Chr6g0245261 Rosa chinensis HOM05D001403 ORTHO05D001313 1.5e-06 56.2 57 56.1
ATR0810G028 Amborella trichopoda HOM05D001403 ORTHO05D001313 1.9e-06 55.8 57 52.6
BolC8t51741H Brassica oleracea HOM05D001403 ORTHO05D001313 1.9e-06 55.8 57 54.4
CAN.G588.24 Capsicum annuum HOM05D001403 ORTHO05D001313 1.9e-06 55.8 57 54.4
Glyma.10G059500 Glycine max HOM05D001403 ORTHO05D001313 1.9e-06 55.8 57 54.4
Lj1g0005278 Lotus japonicus HOM05D001403 ORTHO05D001313 1.9e-06 55.8 57 54.4
Lalb_Chr20g0112521 Lupinus albus HOM05D001403 ORTHO05D001313 1.9e-06 55.8 62 50.0
Nitab4.5_0000283g0100 Nicotiana tabacum HOM05D001403 ORTHO05D001313 1.9e-06 55.8 57 54.4
Nitab4.5_0000980g0170 Nicotiana tabacum HOM05D001403 ORTHO05D001313 1.9e-06 55.8 57 54.4
CsaV3_2G015690 Cucumis sativus L. HOM05D001403 ORTHO05D001313 2.5e-06 55.5 57 52.6
Nitab4.5_0000956g0160 Nicotiana tabacum HOM05D001403 ORTHO05D001313 2.5e-06 55.5 57 52.6
Phvul.001G181000 Phaseolus vulgaris HOM05D001403 ORTHO05D001313 2.5e-06 55.5 57 54.4
Solyc10g054870.3 Solanum lycopersicum HOM05D001403 ORTHO05D001313 2.5e-06 55.5 57 54.4
Sopen10g024790 Solanum pennellii HOM05D001403 ORTHO05D001313 2.5e-06 55.5 57 54.4
PGSC0003DMG400004436 Solanum tuberosum HOM05D001403 ORTHO05D001313 2.5e-06 55.5 57 54.4
unitig_21.g20804 Utricularia gibba HOM05D001403 ORTHO05D001313 2.5e-06 55.5 62 48.4
AL4G10260 Arabidopsis lyrata HOM05D001403 ORTHO05D001313 3.3e-06 55.1 57 54.4
AT2G21170 Arabidopsis thaliana HOM05D001403 ORTHO05D001313 3.3e-06 55.1 57 54.4
CANSAT25G0104 Cannabis sativa HOM05D001403 ORTHO05D001313 3.3e-06 55.1 57 54.4
Carub.0004s0019 Capsella rubella HOM05D001403 ORTHO05D001313 3.3e-06 55.1 57 54.4
CiPaw.05G077100 Carya illinoinensis HOM05D001403 ORTHO05D001313 3.3e-06 55.1 57 54.4
Ca_26407_v3 Cicer arietinum L. HOM05D001403 ORTHO05D001313 3.3e-06 55.1 57 54.4
Haze_02199 Corylus avellana HOM05D001403 ORTHO05D001313 3.3e-06 55.1 62 50.0
Glyma.03G185800 Glycine max HOM05D001403 ORTHO05D001313 3.3e-06 55.1 57 54.4
Glyma.19G186000 Glycine max HOM05D001403 ORTHO05D001313 3.3e-06 55.1 57 54.4
MD05G1115700 Malus domestica HOM05D001403 ORTHO05D001313 3.3e-06 55.1 57 54.4
Psat3g040800 Pisum sativum HOM05D001403 ORTHO05D001313 3.3e-06 55.1 57 54.4
VMungo1383G1778 Vigna mungo HOM05D001403 ORTHO05D001313 3.3e-06 55.1 57 54.4
Solyc01g111120.4 Solanum lycopersicum HOM05D001403 ORTHO05D001313 4.3e-06 54.7 57 52.6
Sopen01g053180 Solanum pennellii HOM05D001403 ORTHO05D001313 4.3e-06 54.7 57 52.6
PGSC0003DMG400001595 Solanum tuberosum HOM05D001403 ORTHO05D001313 4.3e-06 54.7 57 52.6
HanXRQChr13g0389071 Helianthus annuus HOM05D001403 ORTHO05D001313 7.3e-06 53.9 62 48.4
Lsat_1_v5_gn_8_125881 Lactuca sativa HOM05D001403 ORTHO05D001313 7.3e-06 53.9 62 48.4
MD10G1118200 Malus domestica HOM05D001403 ORTHO05D001313 7.3e-06 53.9 57 52.6
HanXRQChr17g0556391 Helianthus annuus HOM05D001403 ORTHO05D001313 9.5e-06 53.5 62 48.4


User provided reference genes

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