Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 8.9e-235 816.6 427 100.0
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 9.3e-184 647.1 436 77.5
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 2.2e-177 625.9 419 76.8
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 8.4e-177 624.0 419 76.6
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.4e-176 623.2 419 76.4
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 2.5e-176 622.5 419 76.8
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 9.3e-176 620.5 422 75.1
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 1.6e-175 619.8 416 76.0
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 6.0e-175 617.8 416 75.7
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 7.9e-175 617.5 417 75.5
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 7.9e-175 617.5 415 76.1
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 1.0e-174 617.1 416 75.7
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 1.3e-174 616.7 416 75.5
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.3e-174 616.7 416 75.2
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.3e-174 616.7 418 74.9
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.3e-174 616.7 434 74.2
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.8e-174 616.3 416 75.7
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.8e-174 616.3 416 75.5
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 2.3e-174 615.9 416 76.0
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 5.1e-174 614.8 419 75.2
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 5.1e-174 614.8 419 75.2
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 6.7e-174 614.4 397 78.6
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 6.7e-174 614.4 416 75.5
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 8.7e-174 614.0 430 74.7
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 1.1e-173 613.6 416 75.2
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 1.9e-173 612.8 416 75.7
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 2.5e-173 612.5 415 76.1
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 3.3e-173 612.1 416 75.0
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 3.3e-173 612.1 419 75.2
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 3.3e-173 612.1 415 74.7
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 4.3e-173 611.7 417 74.3
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 4.3e-173 611.7 419 74.9
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 5.7e-173 611.3 423 74.7
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 5.7e-173 611.3 419 74.5
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 7.4e-173 610.9 416 75.2
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 9.7e-173 610.5 416 74.8
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 9.7e-173 610.5 420 75.0
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 9.7e-173 610.5 420 74.3
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.3e-172 610.1 428 75.0
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 1.6e-172 609.8 416 74.8
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 2.2e-172 609.4 415 74.9
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 2.2e-172 609.4 417 74.6
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 2.2e-172 609.4 415 74.2
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 2.8e-172 609.0 417 73.9
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 2.8e-172 609.0 415 75.7
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 2.8e-172 609.0 415 74.2
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 2.8e-172 609.0 415 75.2
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 3.7e-172 608.6 415 75.4
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 3.7e-172 608.6 415 75.2
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 3.7e-172 608.6 415 74.2
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 3.7e-172 608.6 415 74.5
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 4.8e-172 608.2 416 74.3
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.8e-172 608.2 419 74.0
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 6.3e-172 607.8 416 74.5
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 6.3e-172 607.8 415 74.9
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 6.3e-172 607.8 419 73.7
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 8.2e-172 607.4 415 74.5
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.1e-171 607.1 415 73.5
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 1.1e-171 607.1 415 74.7
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.1e-171 607.1 414 74.6
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.1e-171 607.1 414 75.4
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.1e-171 607.1 415 75.4
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.1e-171 607.1 416 74.0
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.1e-171 607.1 416 74.0
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 2.4e-171 605.9 416 74.0
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 3.1e-171 605.5 415 74.2
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 3.1e-171 605.5 419 74.0
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 4.1e-171 605.1 416 74.0
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 4.1e-171 605.1 416 74.0
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 4.1e-171 605.1 417 74.6
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 4.1e-171 605.1 399 75.9
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 5.3e-171 604.7 415 74.2
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 5.3e-171 604.7 420 73.8
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 5.3e-171 604.7 416 73.6
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 5.3e-171 604.7 416 73.6
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 6.9e-171 604.4 415 74.5
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 6.9e-171 604.4 416 73.6
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 1.2e-170 603.6 417 74.1
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 1.2e-170 603.6 415 74.0
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.2e-170 603.6 419 73.0
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.5e-170 603.2 396 76.8
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 2.0e-170 602.8 415 74.7
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.6e-170 602.4 428 72.9
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 3.4e-170 602.1 415 74.0
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 3.4e-170 602.1 416 73.1
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 3.4e-170 602.1 415 74.7
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 4.5e-170 601.7 414 74.4
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 7.7e-170 600.9 415 74.0
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 7.7e-170 600.9 415 74.5
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 7.7e-170 600.9 415 73.7
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 7.7e-170 600.9 415 73.0
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.0e-169 600.5 415 74.7
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.3e-169 600.1 415 73.5
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.3e-169 600.1 415 73.5
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 1.3e-169 600.1 416 73.8
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 1.3e-169 600.1 414 74.4
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 1.7e-169 599.7 417 73.4
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.7e-169 599.7 426 72.3
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 2.9e-169 599.0 426 72.3
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 3.8e-169 598.6 415 73.0
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 3.8e-169 598.6 417 73.4
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 6.5e-169 597.8 415 74.0
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 8.5e-169 597.4 397 76.1
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 8.5e-169 597.4 415 73.5
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 8.5e-169 597.4 415 74.0
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.1e-168 597.0 417 73.9
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 1.4e-168 596.7 387 77.8
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.4e-168 596.7 417 73.6
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.5e-168 595.9 433 71.8
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 3.2e-168 595.5 433 71.1
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 9.4e-168 594.0 415 72.8
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 1.2e-167 593.6 415 73.7
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 4.6e-167 591.7 415 73.3
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 7.9e-167 590.9 385 77.7
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.8e-166 589.7 423 71.4
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 5.1e-166 588.2 415 73.0
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 5.1e-166 588.2 444 69.8
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 2.5e-165 585.9 425 71.3
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 3.3e-165 585.5 445 69.2
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 7.4e-165 584.3 419 72.1
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 9.7e-165 583.9 403 74.2
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 3.1e-163 578.9 469 65.0
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 3.1e-163 578.9 469 65.0
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 9.1e-163 577.4 412 70.9
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 2.2e-161 572.8 500 63.0
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.2e-161 572.8 469 67.8
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 9.1e-155 550.8 363 76.3
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 4.5e-154 548.5 415 69.4
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 7.7e-154 547.7 416 69.5
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 3.8e-153 545.4 371 74.9
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 4.2e-152 542.0 373 73.7
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.3e-150 536.2 414 67.1
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.9e-150 535.4 418 68.7
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 1.4e-147 526.9 351 74.6
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 7.2e-144 514.6 415 66.5
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 4.7e-143 511.9 412 63.8
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 1.4e-142 510.4 398 66.6
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.2e-140 503.1 408 65.9
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 6.8e-134 481.5 309 78.3
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 1.8e-131 473.4 330 71.8
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 2.5e-120 436.4 279 80.3
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 3.3e-120 436.0 465 54.6
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 1.6e-114 417.2 260 81.9
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.1e-107 394.4 351 61.8
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.2e-103 380.9 267 70.4
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.2e-100 370.2 240 78.8
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.1e-83 314.7 244 64.3
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 7.1e-83 312.0 205 74.1
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 2.5e-80 303.5 232 64.7
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.1e-75 288.1 221 64.3
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.5e-69 267.7 287 49.1
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 1.0e-60 238.4 188 63.3
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 3.8e-60 236.5 284 49.3
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 9.3e-59 231.9 207 57.0
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 1.6e-50 204.5 147 64.6
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 7.7e-45 185.7 174 62.1
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 1.1e-38 165.2 101 87.1
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 1.0e-36 158.7 119 63.0
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 3.8e-36 156.8 287 35.2
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.5e-35 154.8 129 58.9
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 2.0e-32 144.4 157 56.1
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 7.4e-32 142.5 157 56.1
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 6.3e-31 139.4 178 41.6
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.4e-25 121.7 124 53.2
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 2.8e-23 114.0 105 57.1
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 3.5e-21 107.1 129 48.1
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 3.0e-17 94.0 69 65.2
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 3.5e-13 80.5 82 53.7
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 8.6e-12 75.9 53 73.6
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 2.8e-10 70.9 46 80.4
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 1.2e-08 65.5 40 85.0
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 8.3e-07 59.3 37 70.3
Pp3c2_3730 Physcomitrium patens HOM05D002061 ORTHO05D002849 8.3e-07 59.3 414 25.6
Ah.07g203780 Amaranthus hybridus HOM05D002061 ORTHO05D002849 1.1e-06 58.9 380 23.4
Psat1g139240 Pisum sativum HOM05D002061 ORTHO05D002849 1.4e-06 58.5 410 23.2


User provided reference genes

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