Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 8.9e-67 256.9 140 100.0
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.7e-55 218.8 140 88.6
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 3.3e-45 185.3 132 73.5
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 5.6e-45 184.5 137 73.0
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 4.4e-42 174.9 115 73.9
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 4.9e-41 171.4 115 72.2
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 4.9e-41 171.4 106 80.2
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.3e-38 162.5 115 67.8
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 9.6e-37 157.1 107 69.2
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 1.3e-36 156.8 108 69.4
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 1.6e-36 156.4 129 61.2
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.1e-36 156.0 111 66.7
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.1e-36 156.0 111 66.7
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 2.1e-36 156.0 111 66.7
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 4.8e-36 154.8 111 65.8
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 4.8e-36 154.8 130 60.8
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 4.8e-36 154.8 108 68.5
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 4.8e-36 154.8 130 59.2
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 6.2e-36 154.5 111 65.8
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 8.1e-36 154.1 130 59.2
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 8.1e-36 154.1 129 59.7
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 8.1e-36 154.1 129 59.7
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 8.1e-36 154.1 129 59.7
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 8.1e-36 154.1 111 64.9
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 1.4e-35 153.3 111 64.9
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 1.4e-35 153.3 115 70.4
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 1.8e-35 152.9 106 69.8
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.8e-35 152.9 129 58.9
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 2.4e-35 152.5 111 65.8
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 2.4e-35 152.5 107 66.4
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 2.4e-35 152.5 129 58.9
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 3.1e-35 152.1 129 59.7
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 5.3e-35 151.4 138 58.0
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 6.9e-35 151.0 111 64.9
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 1.2e-34 150.2 125 59.2
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 1.2e-34 150.2 113 62.8
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.5e-34 149.8 129 58.1
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 2.0e-34 149.4 137 56.2
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 3.4e-34 148.7 111 63.1
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 3.4e-34 148.7 114 60.5
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 4.5e-34 148.3 129 58.1
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 4.5e-34 148.3 129 58.1
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 4.5e-34 148.3 129 57.4
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 4.5e-34 148.3 107 66.4
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 4.5e-34 148.3 110 62.7
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.5e-34 148.3 129 58.1
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 5.8e-34 147.9 107 65.4
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 7.6e-34 147.5 104 68.3
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 9.9e-34 147.1 109 64.2
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 1.3e-33 146.7 109 67.0
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.7e-33 146.4 129 58.1
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 2.2e-33 146.0 109 63.3
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.2e-33 146.0 109 63.3
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 2.9e-33 145.6 111 60.4
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 2.9e-33 145.6 107 64.5
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 2.9e-33 145.6 111 60.4
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 3.8e-33 145.2 100 69.0
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 3.8e-33 145.2 114 59.6
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 3.8e-33 145.2 114 59.6
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 4.9e-33 144.8 107 63.6
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 6.4e-33 144.4 111 59.5
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 6.4e-33 144.4 114 59.6
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 8.4e-33 144.1 114 58.8
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 8.4e-33 144.1 111 60.4
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 8.4e-33 144.1 107 63.6
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 8.4e-33 144.1 111 59.5
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.1e-32 143.7 114 58.8
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 1.1e-32 143.7 109 61.5
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.1e-32 143.7 115 58.3
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 1.4e-32 143.3 114 58.8
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.4e-32 143.3 114 58.8
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 1.4e-32 143.3 113 58.4
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 1.9e-32 142.9 107 63.6
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.9e-32 142.9 114 58.8
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 1.9e-32 142.9 108 63.9
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.4e-32 142.5 110 62.7
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 2.4e-32 142.5 112 58.9
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 2.4e-32 142.5 114 57.9
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 2.4e-32 142.5 131 53.4
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 2.4e-32 142.5 111 59.5
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 2.4e-32 142.5 129 57.4
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 3.2e-32 142.1 110 60.9
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 3.2e-32 142.1 109 59.6
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 4.2e-32 141.7 107 60.7
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 4.2e-32 141.7 114 58.8
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 4.2e-32 141.7 114 57.9
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 5.4e-32 141.4 111 59.5
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 1.2e-31 140.2 109 58.7
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 1.6e-31 139.8 130 53.8
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 2.1e-31 139.4 111 57.7
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.7e-31 139.0 128 54.7
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 4.6e-31 138.3 130 56.2
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 4.6e-31 138.3 109 59.6
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 4.6e-31 138.3 116 59.5
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 6.0e-31 137.9 114 55.3
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 7.9e-31 137.5 125 56.0
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 1.0e-30 137.1 130 54.6
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.8e-30 136.3 110 55.5
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 1.8e-30 136.3 120 55.0
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.0e-30 135.6 112 58.0
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 5.1e-30 134.8 114 55.3
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 8.7e-30 134.0 130 52.3
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 1.1e-29 133.7 104 63.5
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 1.1e-29 133.7 89 70.8
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 1.5e-29 133.3 107 56.1
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.9e-29 132.9 134 53.7
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 3.3e-29 132.1 107 60.7
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 3.3e-29 132.1 103 59.2
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 9.6e-29 130.6 130 50.0
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.3e-28 130.2 130 49.2
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 4.8e-28 128.3 102 56.9
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 4.8e-28 128.3 101 58.4
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 8.1e-28 127.5 87 69.0
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.1e-27 127.1 111 53.2
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.4e-27 126.7 102 54.9
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.4e-27 126.7 95 65.3
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 1.8e-27 126.3 102 53.9
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 3.1e-27 125.6 141 49.6
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 3.1e-27 125.6 102 53.9
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 3.1e-27 125.6 102 53.9
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 3.1e-27 125.6 102 53.9
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 3.1e-27 125.6 102 53.9
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 3.1e-27 125.6 102 53.9
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 3.1e-27 125.6 102 53.9
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 3.1e-27 125.6 102 53.9
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 6.9e-27 124.4 97 59.8
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 9.0e-27 124.0 89 62.9
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 1.2e-26 123.6 100 55.0
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 1.2e-26 123.6 100 55.0
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 2.6e-26 122.5 129 46.5
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 3.4e-26 122.1 100 54.0
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 3.4e-26 122.1 169 42.0
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 1.1e-24 117.1 82 65.9
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 7.1e-24 114.4 161 41.0
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 1.6e-23 113.2 90 56.7
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 2.7e-23 112.5 106 56.6
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 3.9e-22 108.6 79 67.1
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 3.9e-22 108.6 75 62.7
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 1.5e-21 106.7 91 54.9
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 5.6e-21 104.8 78 61.5
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.3e-20 103.6 77 59.7
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 6.2e-20 101.3 105 48.6
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 1.1e-19 100.5 79 62.0
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 5.3e-19 98.2 89 51.7
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 1.2e-18 97.1 101 43.6
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 4.5e-18 95.1 115 46.1
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.0e-17 94.0 115 45.2
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.9e-17 92.4 63 63.5
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 6.5e-17 91.3 72 58.3
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.4e-16 90.1 75 56.0
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.9e-16 89.7 69 58.0
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 4.2e-16 88.6 114 42.1
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 9.3e-16 87.4 68 50.0
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 1.9e-13 79.7 58 69.0
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.4e-10 68.9 70 44.3
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 1.3e-09 67.0 93 36.6
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 9.3e-08 60.8 111 36.0
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 1.8e-06 56.6 100 30.0


User provided reference genes

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