Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_17110 Physcomitrium patens HOM05D015517 ORTHO05D017295 9.1e-240 833.2 425 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3546 Anthoceros agrestis HOM05D015517 ORTHO05D017295 7.5e-117 424.9 373 57.4
Mapoly0102s0003 Marchantia polymorpha HOM05D015517 ORTHO05D017295 7.5e-101 371.7 369 53.7
CBR_g49763 Chara braunii HOM05D015517 ORTHO05D017295 8.3e-100 368.2 393 48.1
CBR_g20049 Chara braunii HOM05D015517 ORTHO05D017295 3.1e-86 323.2 352 48.3
MCO05G533 Micromonas commoda HOM05D015517 ORTHO05D017295 1.8e-62 244.2 341 43.4
PRCOL_00006244 Prasinoderma coloniale HOM05D015517 ORTHO05D017295 3.9e-49 199.9 219 45.7
Cfa026510 Carpinus fangiana HOM05D015517 ORTHO05D017295 1.6e-26 124.8 330 29.1
Cfa023983 Carpinus fangiana HOM05D015517 ORTHO05D017295 3.6e-18 97.1 312 31.4
Ciclev10017853m.g Citrus clementina HOM05D000495 ORTHO05D000357 2.0e-16 91.3 333 27.0
Ciclev10018271m.g Citrus clementina HOM05D000495 ORTHO05D000357 2.0e-16 91.3 333 27.0
PGR142G0028 Punica granatum HOM05D000495 ORTHO05D000357 1.1e-14 85.5 333 27.6
Prupe.6G150000 Prunus persica HOM05D000495 ORTHO05D000357 1.4e-14 85.1 319 27.6
QL01p018719 Quercus lobata HOM05D000495 ORTHO05D000357 1.4e-14 85.1 326 27.9
MD11G1178000 Malus domestica HOM05D000495 ORTHO05D000357 2.4e-14 84.3 326 28.2
FvH4_4g26180 Fragaria vesca HOM05D000495 ORTHO05D000357 3.1e-14 84.0 338 26.3
COL.COLO4_16464 Corchorus olitorius HOM05D000495 ORTHO05D000357 5.3e-14 83.2 321 27.1
Nn2g14479 Nelumbo nucifera HOM05D000495 ORTHO05D000357 7.0e-14 82.8 365 27.4
Thhalv10010219m.g Eutrema salsugineum HOM05D000495 ORTHO05D000357 9.1e-14 82.4 326 27.9
Dinv00088 Davidia involucrata HOM05D000495 ORTHO05D000357 1.2e-13 82.0 314 27.7
Os02g0131400 Oryza sativa ssp. japonica HOM05D000495 ORTHO05D000357 1.2e-13 82.0 326 28.2
QL07p018843 Quercus lobata HOM05D000495 ORTHO05D000357 1.2e-13 82.0 319 26.6
Thecc.09G266700 Theobroma cacao HOM05D000495 ORTHO05D000357 1.2e-13 82.0 326 27.0
Actinidia03951 Actinidia chinensis HOM05D000495 ORTHO05D000357 1.6e-13 81.6 304 28.3
Carub.0006s0380 Capsella rubella HOM05D000495 ORTHO05D000357 1.6e-13 81.6 338 26.6
MD03G1161800 Malus domestica HOM05D000495 ORTHO05D000357 1.6e-13 81.6 326 28.2
PGR142G0023 Punica granatum HOM05D000495 ORTHO05D000357 2.0e-13 81.3 315 27.3
A03p01900 Brassica napus HOM05D000495 ORTHO05D000357 2.6e-13 80.9 326 27.3
BraA03t09560Z Brassica rapa HOM05D000495 ORTHO05D000357 2.6e-13 80.9 326 27.3
CSS0016696 Camellia sinensis var. sinensis HOM05D000495 ORTHO05D000357 2.6e-13 80.9 308 28.6
Potri.009G153900 Populus trichocarpa HOM05D000495 ORTHO05D000357 2.6e-13 80.9 329 27.1
PGR042G1294 Punica granatum HOM05D000495 ORTHO05D000357 2.6e-13 80.9 337 27.3
PGR119G0999 Punica granatum HOM05D000495 ORTHO05D000357 2.6e-13 80.9 327 27.5
Manes.11G105100 Manihot esculenta HOM05D000495 ORTHO05D000357 3.5e-13 80.5 335 26.9
Prupe.6G150500 Prunus persica HOM05D000495 ORTHO05D000357 3.5e-13 80.5 308 27.6
BcaB01g05920 Brassica carinata HOM05D000495 ORTHO05D000357 4.5e-13 80.1 326 27.3
C03p02270 Brassica napus HOM05D000495 ORTHO05D000357 4.5e-13 80.1 326 27.3
BolC3t12778H Brassica oleracea HOM05D000495 ORTHO05D000357 4.5e-13 80.1 326 27.3
Gohir.A11G233300 Gossypium hirsutum HOM05D000495 ORTHO05D000357 4.5e-13 80.1 303 25.7
Gohir.D11G244500 Gossypium hirsutum HOM05D000495 ORTHO05D000357 4.5e-13 80.1 303 26.1
Gorai.007G260100 Gossypium raimondii HOM05D000495 ORTHO05D000357 4.5e-13 80.1 303 26.1
Prupe.6G150400 Prunus persica HOM05D000495 ORTHO05D000357 4.5e-13 80.1 318 27.4
MELO3C026609.2 Cucumis melo HOM05D000495 ORTHO05D000357 5.9e-13 79.7 316 26.3
HanXRQChr11g0347491 Helianthus annuus HOM05D000495 ORTHO05D000357 5.9e-13 79.7 333 26.1
Sp6g37940 Schrenkiella parvula HOM05D000495 ORTHO05D000357 5.9e-13 79.7 329 25.8
AT5G04885 Arabidopsis thaliana HOM05D000495 ORTHO05D000357 7.7e-13 79.3 338 26.6
BcaNung05154 Brassica carinata HOM05D000495 ORTHO05D000357 7.7e-13 79.3 326 27.3
CsaV3_3G043060 Cucumis sativus L. HOM05D000495 ORTHO05D000357 7.7e-13 79.3 316 26.6
Thhalv10012900m.g Eutrema salsugineum HOM05D000495 ORTHO05D000357 7.7e-13 79.3 338 26.3
MD11G1177800 Malus domestica HOM05D000495 ORTHO05D000357 7.7e-13 79.3 328 27.4
Thecc.09G306000 Theobroma cacao HOM05D000495 ORTHO05D000357 7.7e-13 79.3 326 26.1
AL6G14560 Arabidopsis lyrata HOM05D000495 ORTHO05D000357 1.0e-12 79.0 338 26.3
SEGI_26146 Sequoiadendron giganteum HOM05D000495 ORTHO05D000357 1.0e-12 79.0 336 27.1
THA.LOC104826957 Tarenaya hassleriana HOM05D000495 ORTHO05D000357 1.0e-12 79.0 326 26.1
vmacro00664 Vaccinium macrocarpon HOM05D000495 ORTHO05D000357 1.0e-12 79.0 296 27.7
CARHR172980 Cardamine hirsuta HOM05D000495 ORTHO05D000357 1.3e-12 78.6 277 28.9
SEGI_15681 Sequoiadendron giganteum HOM05D000495 ORTHO05D000357 1.3e-12 78.6 350 26.3
TWI79G0304 Tripterygium wilfordii HOM05D000495 ORTHO05D000357 1.3e-12 78.6 304 27.0
EL10Ac8g20610 Beta vulgaris HOM05D000495 ORTHO05D000357 1.7e-12 78.2 307 26.7
Thhalv10005832m.g Eutrema salsugineum HOM05D000495 ORTHO05D000357 1.7e-12 78.2 321 28.0
THA.LOC104803070 Tarenaya hassleriana HOM05D000495 ORTHO05D000357 1.7e-12 78.2 326 26.7
GSVIVG01023452001 Vitis vinifera HOM05D000495 ORTHO05D000357 1.7e-12 78.2 338 26.9
GSVIVG01037542001 Vitis vinifera HOM05D000495 ORTHO05D000357 1.7e-12 78.2 327 27.5
Aa31LG4G15970 Aethionema arabicum HOM05D000495 ORTHO05D000357 2.2e-12 77.8 306 28.1
DCAR_020666 Daucus carota HOM05D000495 ORTHO05D000357 2.2e-12 77.8 330 27.3
RcHm_v2.0_Chr3g0496721 Rosa chinensis HOM05D000495 ORTHO05D000357 2.2e-12 77.8 315 26.0
A10p31270 Brassica napus HOM05D000495 ORTHO05D000357 2.9e-12 77.4 346 26.3
BraA10t45171Z Brassica rapa HOM05D000495 ORTHO05D000357 2.9e-12 77.4 346 26.3
ClCG10G013600 Citrullus lanatus HOM05D000495 ORTHO05D000357 2.9e-12 77.4 360 25.3
Sed0011573 Sechium edule HOM05D000495 ORTHO05D000357 2.9e-12 77.4 308 26.9
Thecc.05G247200 Theobroma cacao HOM05D000495 ORTHO05D000357 2.9e-12 77.4 437 24.5
VMungo1383G1016 Vigna mungo HOM05D000495 ORTHO05D000357 2.9e-12 77.4 306 26.5
CANSAT54G3022 Cannabis sativa HOM05D000495 ORTHO05D000357 3.8e-12 77.0 328 25.3
Ciclev10028018m.g Citrus clementina HOM05D000495 ORTHO05D000357 3.8e-12 77.0 315 27.9
CsaV3_3G043070 Cucumis sativus L. HOM05D000495 ORTHO05D000357 3.8e-12 77.0 327 25.4
GSVIVG01023455001 Vitis vinifera HOM05D000495 ORTHO05D000357 3.8e-12 77.0 328 26.8
BcaC02g10307 Brassica carinata HOM05D000495 ORTHO05D000357 5.0e-12 76.6 320 26.6
BolC4t24583H Brassica oleracea HOM05D000495 ORTHO05D000357 5.0e-12 76.6 320 26.6
BolC9t59938H Brassica oleracea HOM05D000495 ORTHO05D000357 5.0e-12 76.6 346 26.0
CAN.G439.5 Capsicum annuum HOM05D000495 ORTHO05D000357 5.0e-12 76.6 350 26.0
ClCG00G005450 Citrullus lanatus HOM05D000495 ORTHO05D000357 5.0e-12 76.6 326 26.4
ClCG10G013570 Citrullus lanatus HOM05D000495 ORTHO05D000357 5.0e-12 76.6 326 26.4
ClCG10G013580 Citrullus lanatus HOM05D000495 ORTHO05D000357 5.0e-12 76.6 326 26.4
Duzib106G0261 Durio zibethinus HOM05D000495 ORTHO05D000357 5.0e-12 76.6 427 23.7
Manes.04G051400 Manihot esculenta HOM05D000495 ORTHO05D000357 5.0e-12 76.6 313 26.5
RhsimUnG0026000 Rhododendron simsii HOM05D000495 ORTHO05D000357 5.0e-12 76.6 291 28.2
Sabra09G0121200 Salix brachista HOM05D000495 ORTHO05D000357 5.0e-12 76.6 381 26.0
PSO675G8143 Papaver somniferum HOM05D000495 ORTHO05D000357 6.5e-12 76.3 318 26.7
MELO3C012319.2 Cucumis melo HOM05D000495 ORTHO05D000357 8.5e-12 75.9 306 27.8
Nitab4.5_0004014g0030 Nicotiana tabacum HOM05D000495 ORTHO05D000357 8.5e-12 75.9 329 25.8
Sed0017235 Sechium edule HOM05D000495 ORTHO05D000357 8.5e-12 75.9 329 27.7
Sopen01g040700 Solanum pennellii HOM05D000495 ORTHO05D000357 8.5e-12 75.9 329 25.8
C03p71280 Brassica napus HOM05D000495 ORTHO05D000357 1.1e-11 75.5 326 25.8
Duzib128G1728 Durio zibethinus HOM05D000495 ORTHO05D000357 1.1e-11 75.5 305 26.6
Duzib168G2088 Durio zibethinus HOM05D000495 ORTHO05D000357 1.1e-11 75.5 315 27.0
PSO339G6179 Papaver somniferum HOM05D000495 ORTHO05D000357 1.1e-11 75.5 317 27.1
C09p71910 Brassica napus HOM05D000495 ORTHO05D000357 1.5e-11 75.1 346 26.0
Ciclev10028048m.g Citrus clementina HOM05D000495 ORTHO05D000357 1.5e-11 75.1 326 26.1
HanXRQChr01g0026351 Helianthus annuus HOM05D000495 ORTHO05D000357 1.5e-11 75.1 316 25.6
Pp3c24_19980 Physcomitrium patens HOM05D000495 ORTHO05D000357 1.5e-11 75.1 341 27.9
Hund15046 Selenicereus undatus HOM05D000495 ORTHO05D000357 1.5e-11 75.1 324 27.2
Glyma.09G023400 Glycine max HOM05D000495 ORTHO05D000357 1.9e-11 74.7 327 26.3
Medtr6g028100 Medicago truncatula HOM05D000495 ORTHO05D000357 1.9e-11 74.7 307 27.4
Prupe.6G150800 Prunus persica HOM05D000495 ORTHO05D000357 1.9e-11 74.7 305 27.2
Sp5g00810 Schrenkiella parvula HOM05D000495 ORTHO05D000357 1.9e-11 74.7 321 25.9
HPP92_011036 Vanilla planifolia HOM05D000495 ORTHO05D000357 1.9e-11 74.7 326 25.5
A04p00570 Brassica napus HOM05D000495 ORTHO05D000357 2.5e-11 74.3 320 26.2
C04p30480 Brassica napus HOM05D000495 ORTHO05D000357 2.5e-11 74.3 320 26.2
BraA04t15777Z Brassica rapa HOM05D000495 ORTHO05D000357 2.5e-11 74.3 320 26.2
ClCG05G022080 Citrullus lanatus HOM05D000495 ORTHO05D000357 2.5e-11 74.3 306 26.8
CsaV3_5G035070 Cucumis sativus L. HOM05D000495 ORTHO05D000357 2.5e-11 74.3 306 27.8
Cfa011651 Carpinus fangiana HOM05D000495 ORTHO05D000357 3.2e-11 73.9 313 25.6
PSO384G1522 Papaver somniferum HOM05D000495 ORTHO05D000357 3.2e-11 73.9 317 27.1
Solyc01g097000.3 Solanum lycopersicum HOM05D000495 ORTHO05D000357 3.2e-11 73.9 329 25.5
PGSC0003DMG400027520 Solanum tuberosum HOM05D000495 ORTHO05D000357 3.2e-11 73.9 329 25.5
Zm00001eb208980 Zea mays HOM05D000495 ORTHO05D000357 3.2e-11 73.9 325 28.6
BcaB01g00954 Brassica carinata HOM05D000495 ORTHO05D000357 4.2e-11 73.6 326 26.7
CANSAT56G3594 Cannabis sativa HOM05D000495 ORTHO05D000357 4.2e-11 73.6 324 26.2
unitig_746.g26786 Utricularia gibba HOM05D000495 ORTHO05D000357 4.2e-11 73.6 306 26.5
Lj6g0013556 Lotus japonicus HOM05D000495 ORTHO05D000357 5.5e-11 73.2 326 24.8
SEGI_19971 Sequoiadendron giganteum HOM05D000495 ORTHO05D000357 5.5e-11 73.2 326 25.8
THA.LOC104810727 Tarenaya hassleriana HOM05D000495 ORTHO05D000357 5.5e-11 73.2 325 24.6
arahy.Tifrunner.gnm1.ann1.3P4LGJ Arachis hypogaea HOM05D000495 ORTHO05D000357 7.2e-11 72.8 351 24.8
arahy.Tifrunner.gnm1.ann1.H8P4Q7 Arachis hypogaea HOM05D000495 ORTHO05D000357 7.2e-11 72.8 351 24.8
BcaC01g01860 Brassica carinata HOM05D000495 ORTHO05D000357 7.2e-11 72.8 326 25.8
FAN07G0019 Fragaria x ananassa HOM05D000495 ORTHO05D000357 7.2e-11 72.8 308 26.0
Rhsim09G0015000 Rhododendron simsii HOM05D000495 ORTHO05D000357 7.2e-11 72.8 305 27.2
MBI11_g25047_MAGBIO Magnolia biondii HOM05D000495 ORTHO05D000357 9.4e-11 72.4 329 26.7
Oeu063099.1 Olea europaea HOM05D000495 ORTHO05D000499 9.4e-11 72.4 319 27.6
Phvul.001G112600 Phaseolus vulgaris HOM05D000495 ORTHO05D000357 9.4e-11 72.4 316 25.9
Aa31sc14G100 Aethionema arabicum HOM05D000495 ORTHO05D000357 1.2e-10 72.0 310 25.8
Ciclev10030270m.g Citrus clementina HOM05D000495 ORTHO05D000357 1.2e-10 72.0 328 27.1
Sabra09G0121100 Salix brachista HOM05D000495 ORTHO05D000357 1.2e-10 72.0 329 26.7
Mapoly0214s0013 Marchantia polymorpha HOM05D000495 ORTHO05D000357 1.6e-10 71.6 280 27.1
Thecc.05G247300 Theobroma cacao HOM05D000495 ORTHO05D000357 1.6e-10 71.6 315 24.8
EL10Ac6g15611 Beta vulgaris HOM05D000495 ORTHO05D000357 2.1e-10 71.2 313 24.9
BolC3t19411H Brassica oleracea HOM05D000495 ORTHO05D000357 2.1e-10 71.2 327 25.7
AagrBONN_evm.TU.Sc2ySwM_228.747 Anthoceros agrestis HOM05D000495 ORTHO05D000357 4.7e-10 70.1 291 28.5
HPP92_016627 Vanilla planifolia HOM05D000495 ORTHO05D000357 4.7e-10 70.1 326 25.8
GSVIVG01022483001 Vitis vinifera HOM05D000495 ORTHO05D000357 4.7e-10 70.1 312 25.3
Pp3c23_18990 Physcomitrium patens HOM05D000495 ORTHO05D000357 6.1e-10 69.7 283 29.7
CDE04G1827 Ceratophyllum demersum HOM05D000259 ORTHO05D000155 8.0e-10 69.3 294 27.9
vmacro07545 Vaccinium macrocarpon HOM05D000495 ORTHO05D000357 1.0e-09 68.9 329 25.2
Gohir.A13G099100 Gossypium hirsutum HOM05D000495 ORTHO05D000357 1.4e-09 68.6 306 25.8
Gorai.013G114800 Gossypium raimondii HOM05D000495 ORTHO05D000357 1.4e-09 68.6 306 26.1
FAN12G2227 Fragaria x ananassa HOM05D000495 ORTHO05D000357 1.8e-09 68.2 232 27.2
FAN12G3965 Fragaria x ananassa HOM05D000495 ORTHO05D000357 1.8e-09 68.2 232 27.2
Hma1.2p1_0304F.1_g119150 Hydrangea macrophylla HOM05D000495 ORTHO05D000357 1.8e-09 68.2 307 26.4
Oeu038471.1 Olea europaea HOM05D000495 ORTHO05D000357 1.8e-09 68.2 296 25.0
Oeu058177.1 Olea europaea HOM05D000495 ORTHO05D000357 1.8e-09 68.2 308 26.6
SalBow3G0247 Salvia bowleyana HOM05D000495 ORTHO05D000357 1.8e-09 68.2 332 25.6
Carub.0005s2938 Capsella rubella HOM05D000495 ORTHO05D000357 2.3e-09 67.8 257 28.4
Cc06_g07210 Coffea canephora HOM05D000495 ORTHO05D000357 3.0e-09 67.4 306 25.2
Oeu006509.1 Olea europaea HOM05D000495 ORTHO05D000357 3.0e-09 67.4 353 25.2
Oeu060088.1 Olea europaea HOM05D000495 ORTHO05D000357 4.0e-09 67.0 318 25.8
COL.COLO4_32978 Corchorus olitorius HOM05D000495 ORTHO05D000357 5.2e-09 66.6 228 27.6
TPR.G26334 Trifolium pratense HOM05D000495 ORTHO05D000357 5.2e-09 66.6 327 25.1
BcaC06g32194 Brassica carinata HOM05D000495 ORTHO05D000357 6.8e-09 66.2 224 29.5
HanXRQChr01g0011141 Helianthus annuus HOM05D000495 ORTHO05D000357 6.8e-09 66.2 306 25.5
HanXRQChr13g0422561 Helianthus annuus HOM05D000495 ORTHO05D000357 6.8e-09 66.2 245 26.5
SGA_v2.0_scaffold112G31654 Striga asiatica HOM05D000495 ORTHO05D000357 6.8e-09 66.2 329 26.4
Cpa.g.sc51.147 Carica papaya HOM05D000495 ORTHO05D000357 8.8e-09 65.9 261 28.7
Duzib150G1269 Durio zibethinus HOM05D000495 ORTHO05D000357 8.8e-09 65.9 315 24.8
SalBow6G5668 Salvia bowleyana HOM05D000495 ORTHO05D000357 8.8e-09 65.9 319 26.6
TWI63G1292 Tripterygium wilfordii HOM05D000495 ORTHO05D000357 8.8e-09 65.9 329 24.6
Cpa.g.sc103.85 Carica papaya HOM05D000495 ORTHO05D000357 1.2e-08 65.5 222 30.6
Lsat_1_v5_gn_2_103821 Lactuca sativa HOM05D000495 ORTHO05D000357 1.2e-08 65.5 322 25.5
HPP92_016623 Vanilla planifolia HOM05D000495 ORTHO05D000357 1.2e-08 65.5 326 25.2
Mapoly0014s0035 Marchantia polymorpha HOM05D000495 ORTHO05D000357 1.5e-08 65.1 329 24.6
Sed0000207 Sechium edule HOM05D000495 ORTHO05D000357 2.0e-08 64.7 352 24.4
Pp3c26_8580 Physcomitrium patens HOM05D000495 ORTHO05D000357 2.6e-08 64.3 262 27.9
Peaxi162Scf00217g00314 Petunia axillaris HOM05D000495 ORTHO05D000357 3.4e-08 63.9 379 24.8
Hund16406 Selenicereus undatus HOM05D000495 ORTHO05D000357 3.4e-08 63.9 310 24.2
SGA_v2.0_scaffold16G07551 Striga asiatica HOM05D000495 ORTHO05D000357 3.4e-08 63.9 314 28.0
Actinidia03948 Actinidia chinensis HOM05D000495 ORTHO05D000357 5.7e-08 63.2 312 26.3
ATR0618G300 Amborella trichopoda HOM05D000495 ORTHO05D000357 7.5e-08 62.8 331 24.2
HanXRQChr07g0197091 Helianthus annuus HOM05D000495 ORTHO05D000357 7.5e-08 62.8 292 25.0
Peaxi162Scf00355g00021 Petunia axillaris HOM05D000495 ORTHO05D000357 1.3e-07 62.0 338 26.0
Actinidia38757 Actinidia chinensis HOM05D000495 ORTHO05D000357 2.2e-07 61.2 288 27.1
COL.COLO4_32977 Corchorus olitorius HOM05D000495 ORTHO05D000357 6.3e-07 59.7 222 27.9
HPP92_016631 Vanilla planifolia HOM05D000495 ORTHO05D000357 1.1e-06 58.9 267 26.6
Ah.06g187860 Amaranthus hybridus HOM05D000495 ORTHO05D000357 1.4e-06 58.5 390 23.1
Lsat_1_v5_gn_6_31901 Lactuca sativa HOM05D000495 ORTHO05D000357 1.8e-06 58.2 339 24.5
Oeu058178.1 Olea europaea HOM05D000495 ORTHO05D000357 2.4e-06 57.8 297 25.3
TAR371G0902 Trochodendron aralioides HOM05D000495 ORTHO05D000357 2.4e-06 57.8 312 25.3
TAR369G0510 Trochodendron aralioides HOM05D000495 ORTHO05D000357 3.1e-06 57.4 311 25.1
HanXRQChr01g0028251 Helianthus annuus HOM05D000495 ORTHO05D000357 5.3e-06 56.6 268 25.0


User provided reference genes

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