Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_15890 Physcomitrium patens HOM05D011912 ORTHO05D014147 5.6e-71 270.8 131 100.0
Pp3c6_11940 Physcomitrium patens HOM05D002762 ORTHO05D004643 8.4e-27 124.0 156 47.4
Pp3c6_8180 Physcomitrium patens HOM05D011912 ORTHO05D014147 3.2e-18 95.5 93 52.7
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 9.6e-15 84.0 86 41.9
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 2.1e-14 82.8 86 41.9
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 2.1e-14 82.8 86 40.7
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 3.7e-14 82.0 86 40.7
HanXRQChr08g0226481 Helianthus annuus HOM05D002762 ORTHO05D004643 6.3e-14 81.3 86 41.9
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 1.8e-13 79.7 86 41.9
Peaxi162Scf00769g00116 Petunia axillaris HOM05D002762 ORTHO05D004643 1.8e-13 79.7 86 40.7
TAR362G1268 Trochodendron aralioides HOM05D002762 ORTHO05D004643 2.4e-13 79.3 86 41.9
HanXRQChr03g0079911 Helianthus annuus HOM05D002762 ORTHO05D004643 3.1e-13 79.0 86 38.4
Lalb_Chr20g0118281 Lupinus albus HOM05D002762 ORTHO05D004643 3.1e-13 79.0 86 40.7
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 3.1e-13 79.0 86 38.4
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 3.1e-13 79.0 86 40.7
Ciclev10004705m.g Citrus clementina HOM05D002762 ORTHO05D004643 4.1e-13 78.6 86 40.7
Hma1.2p1_2025F.1_g311500 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 4.1e-13 78.6 86 40.7
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 4.1e-13 78.6 86 41.9
CSS0041788 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 5.3e-13 78.2 86 39.5
CSS0044156 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 5.3e-13 78.2 86 39.5
ECA240G4644 Erigeron canadensis HOM05D002762 ORTHO05D004643 6.9e-13 77.8 86 38.4
Aa31LG9G1950 Aethionema arabicum HOM05D002762 ORTHO05D004643 9.0e-13 77.4 86 38.4
Dinv44461 Davidia involucrata HOM05D002762 ORTHO05D004643 1.2e-12 77.0 85 40.0
BcaC06g33410 Brassica carinata HOM05D002762 ORTHO05D004643 1.5e-12 76.6 86 38.4
A03p49130 Brassica napus HOM05D002762 ORTHO05D004643 1.5e-12 76.6 86 38.4
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 1.5e-12 76.6 86 38.4
BolC7t45238H Brassica oleracea HOM05D002762 ORTHO05D004643 1.5e-12 76.6 86 38.4
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 1.5e-12 76.6 86 38.4
MSTRG.3976 Avicennia marina HOM05D002762 ORTHO05D004643 2.0e-12 76.3 82 41.5
CAN.G1247.4 Capsicum annuum HOM05D002762 ORTHO05D004643 2.0e-12 76.3 86 38.4
DCAR_030582 Daucus carota HOM05D002762 ORTHO05D004643 2.0e-12 76.3 82 40.2
Prupe.1G147900 Prunus persica HOM05D002762 ORTHO05D004643 2.0e-12 76.3 86 40.7
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 2.6e-12 75.9 86 38.4
ClCG06G005660 Citrullus lanatus HOM05D002762 ORTHO05D004643 2.6e-12 75.9 86 39.5
MBI19_g20289_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D004643 2.6e-12 75.9 86 39.5
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 2.6e-12 75.9 86 38.4
VMungo1215G0792 Vigna mungo HOM05D002762 ORTHO05D004643 2.6e-12 75.9 86 40.7
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 3.4e-12 75.5 86 36.0
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 3.4e-12 75.5 86 39.5
TWI73G1094 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 3.4e-12 75.5 79 41.8
CANSAT78G1359 Cannabis sativa HOM05D002762 ORTHO05D004643 4.5e-12 75.1 86 39.5
Cfa015545 Carpinus fangiana HOM05D002762 ORTHO05D004643 4.5e-12 75.1 79 43.0
Lsat_1_v5_gn_5_47620 Lactuca sativa HOM05D002762 ORTHO05D004643 4.5e-12 75.1 86 37.2
Glyma.15G101100 Glycine max HOM05D002762 ORTHO05D004643 5.9e-12 74.7 149 28.9
arahy.Tifrunner.gnm1.ann1.L75CTN Arachis hypogaea HOM05D002762 ORTHO05D004643 7.6e-12 74.3 86 40.7
CSS0016618 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 7.6e-12 74.3 73 42.5
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 7.6e-12 74.3 86 37.2
Cc03_g02820 Coffea canephora HOM05D002762 ORTHO05D004643 7.6e-12 74.3 82 40.2
Haze_01003 Corylus avellana HOM05D002762 ORTHO05D004643 7.6e-12 74.3 79 43.0
Glyma.17G019800 Glycine max HOM05D002762 ORTHO05D004643 7.6e-12 74.3 86 39.5
FAN17G2967 Fragaria x ananassa HOM05D002762 ORTHO05D004643 1.0e-11 73.9 86 41.9
FAN22G0648 Fragaria x ananassa HOM05D002762 ORTHO05D004643 1.0e-11 73.9 86 41.9
MD16G1180300 Malus domestica HOM05D002762 ORTHO05D004643 1.0e-11 73.9 86 37.2
Pp3c9_16320 Physcomitrium patens HOM05D011912 ORTHO05D014147 1.0e-11 73.9 57 61.4
Psat1g185320 Pisum sativum HOM05D002762 ORTHO05D004643 1.0e-11 73.9 86 38.4
RcHm_v2.0_Chr4g0419291 Rosa chinensis HOM05D002762 ORTHO05D004643 1.0e-11 73.9 86 40.7
Sed0001779 Sechium edule HOM05D002762 ORTHO05D004643 1.0e-11 73.9 86 39.5
FvH4_4g14060 Fragaria vesca HOM05D002762 ORTHO05D004643 1.3e-11 73.6 86 41.9
Sc19g0004700 Simmondsia chinensis HOM05D002762 ORTHO05D004643 1.3e-11 73.6 79 43.0
FAN12G3553 Fragaria x ananassa HOM05D002762 ORTHO05D004643 1.7e-11 73.2 86 41.9
Os11g0641200 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D004643 1.7e-11 73.2 113 34.5
arahy.Tifrunner.gnm1.ann1.EJ0XN1 Arachis hypogaea HOM05D002762 ORTHO05D004643 2.2e-11 72.8 86 39.5
Lj3C805G9 Lonicera japonica HOM05D002762 ORTHO05D004643 2.2e-11 72.8 79 40.5
Lj6g0020038 Lotus japonicus HOM05D002762 ORTHO05D004643 2.2e-11 72.8 70 44.3
PGSC0003DMG400030790 Solanum tuberosum HOM05D002762 ORTHO05D004643 2.2e-11 72.8 86 37.2
ATR0626G340 Amborella trichopoda HOM05D002762 ORTHO05D004643 2.9e-11 72.4 79 36.7
Medtr2g021030 Medicago truncatula HOM05D002762 ORTHO05D004643 2.9e-11 72.4 84 36.9
Pp3c20_15990 Physcomitrium patens HOM05D011912 ORTHO05D014147 3.8e-11 72.0 54 63.0
Solyc06g054440.2 Solanum lycopersicum HOM05D002762 ORTHO05D004643 3.8e-11 72.0 86 37.2
Sopen06g019510 Solanum pennellii HOM05D002762 ORTHO05D004643 3.8e-11 72.0 86 37.2
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 5.0e-11 71.6 86 36.0
HanXRQChr11g0325871 Helianthus annuus HOM05D002762 ORTHO05D004643 6.5e-11 71.2 69 42.0
PSO170G0016 Papaver somniferum HOM05D002762 ORTHO05D004643 6.5e-11 71.2 80 41.2
PSO302G0133 Papaver somniferum HOM05D002762 ORTHO05D004643 6.5e-11 71.2 80 41.2
QL06p006068 Quercus lobata HOM05D002762 ORTHO05D004643 6.5e-11 71.2 79 39.2
Lalb_Chr18g0055921 Lupinus albus HOM05D002762 ORTHO05D004643 8.4e-11 70.9 115 33.9
Pp3c6_5500 Physcomitrium patens HOM05D011912 ORTHO05D004643 8.4e-11 70.9 125 38.4
vmacro08247 Vaccinium macrocarpon HOM05D002762 ORTHO05D004643 8.4e-11 70.9 86 37.2
VMungo0540G1770 Vigna mungo HOM05D002762 ORTHO05D004643 8.4e-11 70.9 86 36.0
Actinidia40216 Actinidia chinensis HOM05D002762 ORTHO05D004643 1.1e-10 70.5 86 36.0
SGA_v2.0_scaffold237G43847 Striga asiatica HOM05D002762 ORTHO05D004643 1.1e-10 70.5 79 40.5
Pp3c6_5960 Physcomitrium patens HOM05D002762 ORTHO05D004643 1.4e-10 70.1 117 37.6
SEGI_13295 Sequoiadendron giganteum HOM05D002762 ORTHO05D004643 1.4e-10 70.1 79 40.5
AT4G15475 Arabidopsis thaliana HOM05D002762 ORTHO05D004643 1.9e-10 69.7 64 42.2
Pp3c20_20820 Physcomitrium patens HOM05D011912 ORTHO05D014147 1.9e-10 69.7 58 60.3
AL7G40070 Arabidopsis lyrata HOM05D002762 ORTHO05D004643 2.5e-10 69.3 64 42.2
MELO3C021388.2 Cucumis melo HOM05D002762 ORTHO05D004643 2.5e-10 69.3 86 34.9
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 2.5e-10 69.3 68 41.2
Actinidia23462 Actinidia chinensis HOM05D002762 ORTHO05D004643 4.2e-10 68.6 69 39.1
CiPaw.01G157300 Carya illinoinensis HOM05D002762 ORTHO05D004643 5.5e-10 68.2 62 46.8
Eucgr.B01185 Eucalyptus grandis HOM05D002762 ORTHO05D004643 5.5e-10 68.2 69 42.0
Glyma.07G254400 Glycine max HOM05D002762 ORTHO05D004643 7.2e-10 67.8 87 35.6
PGR031G1661 Punica granatum HOM05D002762 ORTHO05D004643 7.2e-10 67.8 79 38.0
Carub.0007s2643 Capsella rubella HOM05D002762 ORTHO05D004643 9.3e-10 67.4 64 42.2
Pp3c6_11910 Physcomitrium patens HOM05D011912 ORTHO05D014147 9.3e-10 67.4 57 57.9
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 9.3e-10 67.4 69 39.1
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 9.3e-10 67.4 69 39.1
arahy.Tifrunner.gnm1.ann1.Q6K1JG Arachis hypogaea HOM05D002762 ORTHO05D004643 1.2e-09 67.0 79 38.0
Migut.G00244 Erythranthe guttata HOM05D002762 ORTHO05D004643 1.2e-09 67.0 79 36.7
Thhalv10024700m.g Eutrema salsugineum HOM05D002762 ORTHO05D004643 1.2e-09 67.0 64 40.6
Pp3c3_35930 Physcomitrium patens HOM05D058928 ORTHO05D014147 1.2e-09 67.0 65 55.4
arahy.Tifrunner.gnm1.ann1.6S26PP Arachis hypogaea HOM05D002762 ORTHO05D004643 1.6e-09 66.6 79 38.0
CDE05G1517 Ceratophyllum demersum HOM05D002762 ORTHO05D004643 1.6e-09 66.6 86 37.2
MD13G1179300 Malus domestica HOM05D002762 ORTHO05D004643 2.1e-09 66.2 83 36.1
CsaV3_6G005490 Cucumis sativus L. HOM05D002762 ORTHO05D004643 2.7e-09 65.9 73 37.0
Glyma.13G211600 Glycine max HOM05D002762 ORTHO05D004643 4.6e-09 65.1 82 36.6
Pp3c3_35860 Physcomitrium patens HOM05D011912 ORTHO05D014147 4.6e-09 65.1 55 52.7
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 4.6e-09 65.1 64 40.6
Pp3c6_5660 Physcomitrium patens HOM05D011912 ORTHO05D014147 6.1e-09 64.7 98 42.9
CARHR222240 Cardamine hirsuta HOM05D002762 ORTHO05D004643 7.9e-09 64.3 63 41.3
Pp3c6_5549 Physcomitrium patens HOM05D011912 ORTHO05D014147 1.8e-08 63.2 51 60.8
Pp3c6_5570 Physcomitrium patens HOM05D011912 ORTHO05D014147 1.8e-08 63.2 57 50.9
Migut.G00246 Erythranthe guttata HOM05D002762 ORTHO05D004643 1.9e-07 59.7 62 38.7
Zm00001eb115300 Zea mays HOM05D002762 ORTHO05D004643 4.3e-07 58.5 82 31.7
Oeu017376.1 Olea europaea HOM05D002762 ORTHO05D004643 7.4e-07 57.8 84 33.3
Pp3c3_35880 Physcomitrium patens HOM05D058928 ORTHO05D014147 2.2e-06 56.2 50 58.0
Thecc.04G271300 Theobroma cacao HOM05D002762 ORTHO05D004643 3.7e-06 55.5 86 33.7
Oeu042638.1 Olea europaea HOM05D002762 ORTHO05D004643 4.8e-06 55.1 84 32.1


User provided reference genes

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