Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 0.0e+00 1950.3 1058 100.0
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 7.8e-256 887.9 859 55.8
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 6.0e-248 861.7 829 55.7
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 7.9e-200 701.8 827 46.4
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 1.9e-198 697.2 822 47.6
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 2.5e-198 696.8 846 48.6
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 9.6e-198 694.9 817 47.4
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 2.6e-195 686.8 812 48.4
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 7.6e-195 685.3 814 47.9
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 1.0e-194 684.9 819 47.3
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 2.2e-194 683.7 827 47.5
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 2.9e-194 683.3 820 46.3
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 5.0e-194 682.6 822 48.8
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 4.2e-193 679.5 848 46.2
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 4.2e-193 679.5 861 45.1
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 5.5e-193 679.1 848 46.1
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 7.2e-193 678.7 840 43.8
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 9.3e-193 678.3 824 48.4
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 1.6e-192 677.6 822 48.7
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 2.1e-192 677.2 873 43.3
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 2.1e-192 677.2 823 46.4
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 3.6e-192 676.4 814 47.1
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 4.6e-192 676.0 848 45.9
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 4.6e-192 676.0 814 47.2
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 6.1e-192 675.6 844 46.1
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 7.9e-192 675.2 824 46.2
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 7.9e-192 675.2 814 47.1
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 1.8e-191 674.1 846 44.2
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 2.3e-191 673.7 825 46.5
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 3.0e-191 673.3 856 45.3
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 3.0e-191 673.3 851 44.2
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 3.9e-191 672.9 822 46.1
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 3.9e-191 672.9 846 46.0
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 3.9e-191 672.9 841 46.6
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 5.1e-191 672.5 853 43.3
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 6.7e-191 672.2 816 46.9
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 6.7e-191 672.2 850 44.4
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 6.7e-191 672.2 840 43.5
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 8.7e-191 671.8 846 44.7
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 1.1e-190 671.4 840 44.9
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 1.1e-190 671.4 830 45.4
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.9e-190 670.6 877 45.4
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 3.3e-190 669.8 856 43.1
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.3e-190 669.8 823 45.6
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 4.3e-190 669.5 809 46.4
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 7.4e-190 668.7 822 47.9
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 1.3e-189 667.9 832 46.0
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 1.6e-189 667.5 817 46.8
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 2.2e-189 667.2 873 45.0
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 2.2e-189 667.2 858 43.7
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 2.2e-189 667.2 823 45.3
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 2.8e-189 666.8 818 45.1
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 3.7e-189 666.4 826 43.7
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 6.3e-189 665.6 821 46.7
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 8.2e-189 665.2 825 46.9
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 1.1e-188 664.8 822 45.4
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 3.1e-188 663.3 823 44.8
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 5.3e-188 662.5 857 44.0
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 6.9e-188 662.1 821 44.1
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 1.5e-187 661.0 839 46.0
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 2.0e-187 660.6 833 47.8
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 3.4e-187 659.8 820 45.5
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 4.5e-187 659.4 823 44.6
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.0e-186 658.3 877 42.3
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 1.3e-186 657.9 854 44.5
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 2.2e-186 657.1 823 45.7
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 8.5e-186 655.2 874 42.2
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 8.5e-186 655.2 872 42.1
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.9e-185 654.1 870 42.2
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 1.9e-185 654.1 819 45.3
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 4.2e-185 652.9 873 42.2
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 5.5e-185 652.5 831 45.0
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 2.7e-184 650.2 835 43.0
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 2.7e-184 650.2 822 44.3
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 6.1e-184 649.0 881 44.4
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 1.1e-182 644.8 823 44.7
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 2.0e-182 644.0 811 42.9
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 4.3e-182 642.9 791 45.3
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 9.7e-182 641.7 795 44.4
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 2.0e-179 634.0 805 45.0
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 2.9e-178 630.2 829 45.4
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 1.5e-174 617.8 819 43.2
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 3.7e-173 613.2 805 42.7
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 1.8e-172 610.9 815 42.2
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 7.2e-169 599.0 838 42.8
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 2.8e-165 587.0 828 43.4
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 2.2e-162 577.4 829 42.0
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 3.0e-159 567.0 746 44.1
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 3.0e-159 567.0 746 44.1
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 3.8e-154 550.1 823 41.7
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 2.8e-149 533.9 836 38.4
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 4.1e-148 530.0 612 49.2
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 6.0e-131 473.0 615 47.6
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.9e-129 468.0 557 48.5
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 5.2e-119 433.3 478 47.7
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 3.6e-112 410.6 495 45.1
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 5.2e-111 406.8 524 46.8
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 6.0e-107 393.3 501 47.3
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.8e-98 365.2 478 46.4
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 2.4e-92 344.7 564 40.8
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 1.7e-77 295.4 413 45.3
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 2.2e-77 295.0 462 43.7
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 6.3e-72 276.9 358 48.0
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 7.2e-52 210.3 198 55.6
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.5e-49 202.6 165 54.5
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 4.4e-41 174.5 291 41.9
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 7.0e-39 167.2 236 37.7
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.1e-36 159.8 198 43.9
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 9.5e-36 156.8 208 38.5
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 2.2e-32 145.6 215 37.2
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 3.7e-32 144.8 125 59.2
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 6.3e-32 144.1 189 39.2
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 8.3e-32 143.7 208 38.9
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 8.3e-32 143.7 189 39.2
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 5.4e-31 141.0 189 38.1
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.6e-27 129.4 113 59.3
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 7.5e-25 120.6 130 48.5
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.3e-21 109.0 94 50.0
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 1.1e-20 106.7 93 58.1
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 4.3e-20 104.8 135 39.3
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.8e-18 99.4 158 35.4
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 5.8e-17 94.4 104 45.2
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 2.9e-16 92.0 90 53.3
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 6.4e-16 90.9 93 46.2
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.0e-13 81.3 82 51.2
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.8e-11 75.5 53 66.0
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.8e-10 72.8 49 71.4
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 4.1e-07 61.6 67 46.3


User provided reference genes

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