Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 2.2e-171 605.5 297 100.0
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 3.5e-81 305.8 255 61.6
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 1.0e-80 304.3 252 58.7
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 1.3e-80 303.9 250 59.6
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 5.1e-80 302.0 254 59.4
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 5.1e-80 302.0 253 58.1
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 1.1e-79 300.8 248 59.3
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 1.9e-79 300.1 250 58.8
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 1.9e-79 300.1 250 59.6
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 5.6e-79 298.5 252 57.9
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 5.6e-79 298.5 251 58.6
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 1.3e-78 297.4 252 57.9
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 4.8e-78 295.4 251 58.6
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 4.8e-78 295.4 250 58.0
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 8.2e-78 294.7 251 57.0
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 8.2e-78 294.7 252 57.9
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 3.1e-77 292.7 262 56.9
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 4.0e-77 292.4 262 57.3
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 4.0e-77 292.4 253 59.7
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 5.3e-77 292.0 249 57.8
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 5.3e-77 292.0 250 57.6
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 6.9e-77 291.6 262 56.1
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 1.2e-76 290.8 249 57.4
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 1.2e-76 290.8 261 55.9
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 1.5e-76 290.4 250 56.8
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 1.5e-76 290.4 253 58.1
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 2.0e-76 290.0 250 57.6
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 2.6e-76 289.7 251 56.2
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 2.6e-76 289.7 251 56.2
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 3.4e-76 289.3 251 55.8
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 7.6e-76 288.1 254 56.3
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 1.0e-75 287.7 251 55.0
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 1.0e-75 287.7 250 54.8
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 1.7e-75 287.0 250 55.6
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 2.2e-75 286.6 250 56.0
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 2.9e-75 286.2 250 58.0
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 3.8e-75 285.8 251 55.0
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 4.9e-75 285.4 222 61.7
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 6.5e-75 285.0 251 56.6
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 1.1e-74 284.3 257 58.8
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 1.9e-74 283.5 256 55.9
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 1.9e-74 283.5 249 57.0
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 3.2e-74 282.7 249 56.2
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 4.2e-74 282.3 266 53.0
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 7.1e-74 281.6 271 52.4
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 9.3e-74 281.2 243 60.9
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 4.6e-73 278.9 234 58.5
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 4.6e-73 278.9 246 56.5
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 4.6e-73 278.9 254 55.9
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 6.0e-73 278.5 252 54.4
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 1.0e-72 277.7 271 52.0
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 1.0e-72 277.7 255 54.9
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 3.0e-72 276.2 225 57.8
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 5.1e-72 275.4 251 53.4
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 5.1e-72 275.4 237 59.5
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 5.1e-72 275.4 250 55.6
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.9e-71 273.5 245 55.9
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 2.5e-71 273.1 262 53.4
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 2.5e-71 273.1 249 55.0
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 9.7e-71 271.2 241 56.0
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 2.2e-70 270.0 234 57.7
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 2.4e-69 266.5 284 47.2
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 4.1e-69 265.8 219 58.4
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 5.3e-69 265.4 278 51.8
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 2.0e-68 263.5 252 50.8
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 7.7e-68 261.5 248 57.3
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 1.3e-67 260.8 240 53.8
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 6.5e-67 258.5 270 50.4
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 1.1e-66 257.7 246 55.3
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 1.4e-64 250.8 186 64.0
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 2.3e-64 250.0 249 52.6
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 3.9e-64 249.2 213 59.6
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 3.1e-61 239.6 211 57.8
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 3.2e-58 229.6 253 49.0
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 1.2e-57 227.6 252 49.6
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 1.2e-52 211.1 213 53.1
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 1.7e-51 207.2 194 53.6
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 2.9e-51 206.5 152 63.8
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 1.4e-50 204.1 260 42.7
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 4.2e-50 202.6 201 51.7
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 6.1e-49 198.7 178 57.9
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 1.7e-46 190.7 269 44.6
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 2.2e-46 190.3 268 41.0
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 1.0e-40 171.4 215 44.2
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 4.5e-36 156.0 254 39.4
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 1.2e-33 147.9 254 37.0
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 5.4e-21 105.9 153 39.9
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 1.1e-18 98.2 112 47.3
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.9e-18 97.4 67 61.2
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 9.2e-13 78.6 110 42.7
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 4.6e-12 76.3 66 51.5
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 6.6e-11 72.4 82 48.8
Glyma.12G027800 Glycine max HOM05D001816 ORTHO05D002001 2.5e-10 70.5 261 27.2
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 3.3e-10 70.1 288 26.4
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 4.3e-10 69.7 279 26.2
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 4.3e-10 69.7 293 25.6
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 7.3e-10 68.9 82 45.1
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 9.5e-10 68.6 294 26.2
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 9.5e-10 68.6 270 25.2
Pp3c2_4380 Physcomitrium patens HOM05D001816 ORTHO05D002001 1.6e-09 67.8 261 26.1
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 3.6e-09 66.6 245 26.9
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 4.7e-09 66.2 236 27.1
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 6.2e-09 65.9 235 27.7
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 6.2e-09 65.9 262 23.7
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 6.2e-09 65.9 252 26.2
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 8.0e-09 65.5 252 27.0
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 8.0e-09 65.5 244 26.6
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 8.0e-09 65.5 244 26.6
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 8.0e-09 65.5 252 26.6
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 1.1e-08 65.1 252 27.0
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.1e-08 65.1 237 28.3
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.4e-08 64.7 252 27.0
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 2.3e-08 63.9 291 25.1
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 2.3e-08 63.9 243 29.2
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 2.3e-08 63.9 243 29.2
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 3.1e-08 63.5 239 28.5
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 3.1e-08 63.5 241 25.3
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 3.1e-08 63.5 241 25.3
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 4.0e-08 63.2 253 25.7
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 4.0e-08 63.2 236 28.0
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 4.0e-08 63.2 244 25.8
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 4.0e-08 63.2 256 23.8
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 5.2e-08 62.8 244 25.4
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 1.2e-07 61.6 244 25.4
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 1.2e-07 61.6 242 27.7
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.5e-07 61.2 238 26.1
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 1.5e-07 61.2 244 25.8
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.5e-07 61.2 236 27.5
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 2.0e-07 60.8 246 27.2
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 2.0e-07 60.8 241 27.0
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 2.0e-07 60.8 236 27.5
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 3.4e-07 60.1 242 25.6
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 3.4e-07 60.1 237 25.7
CBR_g34895 Chara braunii HOM05D001816 ORTHO05D002001 4.4e-07 59.7 241 28.6
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 4.4e-07 59.7 169 28.4
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 4.4e-07 59.7 267 24.3
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 5.8e-07 59.3 247 26.7
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 5.8e-07 59.3 250 26.4
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 5.8e-07 59.3 238 26.1
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 7.5e-07 58.9 267 25.1
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 7.5e-07 58.9 66 43.9
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 9.8e-07 58.5 238 27.7
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 9.8e-07 58.5 164 26.8
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 9.8e-07 58.5 236 28.0
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 9.8e-07 58.5 239 24.7
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 1.3e-06 58.2 164 26.8
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.3e-06 58.2 164 26.8
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 1.7e-06 57.8 243 25.5
RcHm_v2.0_Chr5g0008751 Rosa chinensis HOM05D007625 ORTHO05D343624 2.2e-06 57.4 36 66.7
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.9e-06 57.0 109 33.0
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 2.9e-06 57.0 164 26.8
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 2.9e-06 57.0 238 25.6
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 4.9e-06 56.2 100 34.0
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 4.9e-06 56.2 241 25.7
SEGI_04403 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 4.9e-06 56.2 286 24.5
GSVIVG01024313001 Vitis vinifera HOM05D001816 ORTHO05D002001 6.4e-06 55.8 152 32.2


User provided reference genes

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