Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_30300 Physcomitrium patens HOM05D001529 ORTHO05D050322 1.1e-50 203.0 97 100.0
Pp3c1_30310 Physcomitrium patens HOM05D001529 ORTHO05D050322 1.5e-25 119.4 57 98.2
Pp3c2_11130 Physcomitrium patens HOM05D001529 ORTHO05D007595 1.5e-12 76.3 256 28.1
Nitab4.5_0004358g0030 Nicotiana tabacum HOM05D001529 ORTHO05D007595 8.2e-11 70.5 208 29.3
Nitab4.5_0004215g0030 Nicotiana tabacum HOM05D001529 ORTHO05D007595 1.4e-10 69.7 208 29.3
Pp3c14_20630 Physcomitrium patens HOM05D001529 ORTHO05D007595 3.1e-10 68.6 45 73.3
Mapoly0096s0034 Marchantia polymorpha HOM05D001529 ORTHO05D007595 5.3e-10 67.8 44 68.2
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 2.0e-09 65.9 44 65.9
MD15G1401900 Malus domestica HOM05D001529 ORTHO05D018658 2.6e-09 65.5 48 64.6
Aqoxy4G02192 Aquilegia oxysepala HOM05D001529 ORTHO05D007595 4.5e-09 64.7 44 70.5
MD00G1024000 Malus domestica HOM05D001529 ORTHO05D018658 7.6e-09 63.9 44 68.2
MD09G1120400 Malus domestica HOM05D001529 ORTHO05D007595 7.6e-09 63.9 44 68.2
RcHm_v2.0_Chr2g0156891 Rosa chinensis HOM05D001529 ORTHO05D007595 7.6e-09 63.9 44 68.2
Cc00_g04140 Coffea canephora HOM05D001529 ORTHO05D007595 1.0e-08 63.5 44 68.2
Duzib138G1061 Durio zibethinus HOM05D001529 ORTHO05D007595 1.0e-08 63.5 44 68.2
Hma1.2p1_0405F.1_g145720 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 1.0e-08 63.5 44 68.2
Hma1.2p1_0405F.1_g145730 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 1.0e-08 63.5 44 68.2
Nn1g03283 Nelumbo nucifera HOM05D001529 ORTHO05D007595 1.0e-08 63.5 44 68.2
Sc20g0003910 Simmondsia chinensis HOM05D001529 ORTHO05D007595 1.0e-08 63.5 44 68.2
GSVIVG01030033001 Vitis vinifera HOM05D001529 ORTHO05D007595 1.0e-08 63.5 44 68.2
Psat5g104480 Pisum sativum HOM05D001529 ORTHO05D007595 1.3e-08 63.2 44 68.2
Actinidia21451 Actinidia chinensis HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 65.9
MSTRG.12244 Avicennia marina HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 65.9
CANSAT64G0296 Cannabis sativa HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 68.2
Dinv07847 Davidia involucrata HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 65.9
ECA234G3620 Erigeron canadensis HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 68.2
Migut.H01288 Erythranthe guttata HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 65.9
FvH4_6g41340 Fragaria vesca HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 65.9
FAN05G0710 Fragaria x ananassa HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 65.9
Lj1C790T8 Lonicera japonica HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 65.9
Potri.014G162200 Populus trichocarpa HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 68.2
PGR042G1774 Punica granatum HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 68.2
Rhsim04G0043200 Rhododendron simsii HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 65.9
Sabra14G0123900 Salix brachista HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 68.2
SEGI_09505 Sequoiadendron giganteum HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 65.9
vmacro09386 Vaccinium macrocarpon HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 65.9
Zm00001eb325920 Zea mays HOM05D001529 ORTHO05D007595 1.7e-08 62.8 44 68.2
Aa31sc53G50 Aethionema arabicum HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
AL3G42430 Arabidopsis lyrata HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
AT2G04842 Arabidopsis thaliana HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
A03p44470 Brassica napus HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
C03p55280 Brassica napus HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
BolC3t17800H Brassica oleracea HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
BraA03t13580Z Brassica rapa HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
Carub.0003s2643 Capsella rubella HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
Ciclev10018290m.g Citrus clementina HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
Eucgr.A01062 Eucalyptus grandis HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
Glyma.19G191200 Glycine max HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
Lalb_Chr14g0362561 Lupinus albus HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 63.6
Medtr3g083180 Medicago truncatula HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
Sp3g23420 Schrenkiella parvula HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
TPR.G19324 Trifolium pratense HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
TWI36G1606 Tripterygium wilfordii HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
HPP92_022799 Vanilla planifolia HOM05D001529 ORTHO05D007595 2.2e-08 62.4 49 63.3
VMungo1080G0307 Vigna mungo HOM05D001529 ORTHO05D007595 2.2e-08 62.4 44 65.9
ATR0712G164 Amborella trichopoda HOM05D001529 ORTHO05D007595 2.9e-08 62.0 44 65.9
CDE07G1746 Ceratophyllum demersum HOM05D001529 ORTHO05D007595 2.9e-08 62.0 44 65.9
ClCG02G002590 Citrullus lanatus HOM05D001529 ORTHO05D007595 2.9e-08 62.0 44 68.2
MELO3C024216.2 Cucumis melo HOM05D001529 ORTHO05D007595 2.9e-08 62.0 44 68.2
CsaV3_7G002750 Cucumis sativus L. HOM05D001529 ORTHO05D007595 2.9e-08 62.0 44 68.2
Lsat_1_v5_gn_5_123180 Lactuca sativa HOM05D001529 ORTHO05D007595 2.9e-08 62.0 44 65.9
Manes.12G062800 Manihot esculenta HOM05D001529 ORTHO05D007595 2.9e-08 62.0 44 68.2
Sed0023062 Sechium edule HOM05D001529 ORTHO05D007595 2.9e-08 62.0 44 68.2
THA.LOC104826614 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 2.9e-08 62.0 44 63.6
arahy.Tifrunner.gnm1.ann1.6FNM9R Arachis hypogaea HOM05D001529 ORTHO05D007595 3.8e-08 61.6 44 65.9
arahy.Tifrunner.gnm1.ann1.9BA4YH Arachis hypogaea HOM05D001529 ORTHO05D007595 3.8e-08 61.6 44 65.9
Thhalv10002438m.g Eutrema salsugineum HOM05D001529 ORTHO05D007595 3.8e-08 61.6 44 65.9
HanXRQChr10g0306381 Helianthus annuus HOM05D001529 ORTHO05D007595 3.8e-08 61.6 44 65.9
Lj6g0006977 Lotus japonicus HOM05D001529 ORTHO05D007595 3.8e-08 61.6 44 65.9
MBI19_g06153_MAGBIO Magnolia biondii HOM05D001529 ORTHO05D007595 3.8e-08 61.6 49 61.2
MD05G1180100 Malus domestica HOM05D001529 ORTHO05D018658 3.8e-08 61.6 44 65.9
Oeu064362.2 Olea europaea HOM05D001529 ORTHO05D007595 3.8e-08 61.6 49 61.2
Atru.chr6.3341 Acer truncatum HOM05D001529 ORTHO05D007595 5.0e-08 61.2 44 63.6
DCAR_021112 Daucus carota HOM05D001529 ORTHO05D007595 5.0e-08 61.2 44 63.6
MD05G1333800 Malus domestica HOM05D001529 ORTHO05D018658 5.0e-08 61.2 44 65.9
Thecc.01G188800 Theobroma cacao HOM05D001529 ORTHO05D007595 5.0e-08 61.2 44 65.9
TAR626G0907 Trochodendron aralioides HOM05D001529 ORTHO05D007595 5.0e-08 61.2 44 63.6
CSS0013229 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 6.5e-08 60.8 45 64.4
AUR62005012 Chenopodium quinoa HOM05D001529 ORTHO05D007595 6.5e-08 60.8 44 63.6
Eucgr.A01064 Eucalyptus grandis HOM05D001529 ORTHO05D007595 6.5e-08 60.8 44 63.6
PSO675G8054 Papaver somniferum HOM05D001529 ORTHO05D007595 6.5e-08 60.8 44 63.6
CAN.G897.4 Capsicum annuum HOM05D001529 ORTHO05D007595 8.5e-08 60.5 44 63.6
MCO11G246 Micromonas commoda HOM05D001529 ORTHO05D007595 8.5e-08 60.5 45 57.8
Os02g0538000 Oryza sativa ssp. japonica HOM05D001529 ORTHO05D007595 8.5e-08 60.5 44 63.6
PSO541G2760 Papaver somniferum HOM05D001529 ORTHO05D007595 8.5e-08 60.5 44 63.6
Peaxi162Scf02035g00017 Petunia axillaris HOM05D001529 ORTHO05D007595 8.5e-08 60.5 44 63.6
THA.LOC104815352 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 8.5e-08 60.5 49 57.1
arahy.Tifrunner.gnm1.ann1.TVN328 Arachis hypogaea HOM05D001529 ORTHO05D007595 1.1e-07 60.1 44 63.6
CBR_g3851 Chara braunii HOM05D001529 ORTHO05D007595 1.1e-07 60.1 45 60.0
unitig_62.g23257 Utricularia gibba HOM05D001529 ORTHO05D007595 1.1e-07 60.1 44 63.6
EL10Ac4g09205 Beta vulgaris HOM05D001529 ORTHO05D007595 1.4e-07 59.7 44 61.4
CiPaw.03G277800 Carya illinoinensis HOM05D001529 ORTHO05D007595 1.4e-07 59.7 44 61.4
Eucgr.A01066 Eucalyptus grandis HOM05D001529 ORTHO05D007595 1.4e-07 59.7 62 51.6
MD15G1401400 Malus domestica HOM05D001529 ORTHO05D018658 1.4e-07 59.7 44 63.6
QL08p028982 Quercus lobata HOM05D001529 ORTHO05D007595 1.4e-07 59.7 44 61.4
QL93p0116_0063 Quercus lobata HOM05D001529 ORTHO05D007595 1.4e-07 59.7 44 61.4
Ah.06g192740 Amaranthus hybridus HOM05D001529 ORTHO05D007595 1.9e-07 59.3 44 63.6
CARHR102830 Cardamine hirsuta HOM05D001529 ORTHO05D007595 1.9e-07 59.3 49 55.1
Gohir.A07G167800 Gossypium hirsutum HOM05D001529 ORTHO05D007595 1.9e-07 59.3 44 61.4
Phvul.009G238000 Phaseolus vulgaris HOM05D001529 ORTHO05D007595 1.9e-07 59.3 45 62.2
Hund24142 Selenicereus undatus HOM05D001529 ORTHO05D007595 1.9e-07 59.3 45 62.2
PGSC0003DMG400006139 Solanum tuberosum HOM05D001529 ORTHO05D007595 1.9e-07 59.3 44 61.4
SGA_v2.0_scaffold49G18408 Striga asiatica HOM05D001529 ORTHO05D007595 1.9e-07 59.3 44 63.6
GSVIVG01030028001 Vitis vinifera HOM05D001529 ORTHO05D007595 1.9e-07 59.3 49 57.1
AUR62000956 Chenopodium quinoa HOM05D001529 ORTHO05D007595 2.5e-07 58.9 44 61.4
Gohir.D07G173400 Gossypium hirsutum HOM05D001529 ORTHO05D007595 2.5e-07 58.9 49 57.1
Gorai.001G193700 Gossypium raimondii HOM05D001529 ORTHO05D007595 2.5e-07 58.9 49 57.1
Ca_16364_v3 Cicer arietinum L. HOM05D001529 ORTHO05D007595 3.2e-07 58.5 45 60.0
Solyc07g048080.4 Solanum lycopersicum HOM05D001529 ORTHO05D007595 3.2e-07 58.5 44 61.4
Sopen07g024500 Solanum pennellii HOM05D001529 ORTHO05D007595 3.2e-07 58.5 44 61.4
Haze_12706 Corylus avellana HOM05D001529 ORTHO05D007595 4.2e-07 58.2 45 60.0
PRCOL_00005026 Prasinoderma coloniale HOM05D001529 ORTHO05D007595 4.2e-07 58.2 45 57.8
Prupe.3G203100 Prunus persica HOM05D001529 ORTHO05D007595 4.2e-07 58.2 45 60.0
Glyma.U011002 Glycine max HOM05D001529 ORTHO05D007595 5.5e-07 57.8 44 61.4
Cre10.g421600 Chlamydomonas reinhardtii HOM05D001529 ORTHO05D007595 1.2e-06 56.6 45 55.6
FAN09G0877 Fragaria x ananassa HOM05D001529 ORTHO05D007595 1.2e-06 56.6 45 55.6
FAN14G1621 Fragaria x ananassa HOM05D001529 ORTHO05D007595 1.2e-06 56.6 45 55.6
MD00G1047100 Malus domestica HOM05D001529 ORTHO05D007595 1.2e-06 56.6 45 55.6
CsaV3_4G036250 Cucumis sativus L. HOM05D001529 ORTHO05D007595 2.1e-06 55.8 44 63.6
MD17G1111300 Malus domestica HOM05D001529 ORTHO05D018658 2.1e-06 55.8 39 64.1


User provided reference genes

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