Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.3e-204 715.3 357 100.0
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.3e-119 433.0 289 78.2
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.6e-107 392.9 249 79.5
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 5.0e-98 362.1 253 75.1
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 2.7e-83 313.2 291 57.7
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 1.3e-74 284.3 218 68.3
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 2.1e-72 276.9 294 53.1
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 2.3e-71 273.5 220 62.7
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.2e-70 271.2 289 54.0
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 1.5e-70 270.8 283 56.2
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 4.4e-70 269.2 296 52.0
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 2.9e-69 266.5 294 52.0
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 4.9e-69 265.8 290 52.8
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 6.4e-69 265.4 295 52.2
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 1.1e-68 264.6 277 54.2
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 1.1e-68 264.6 295 50.2
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.1e-68 264.6 216 64.4
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 1.4e-68 264.2 277 53.8
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 1.4e-68 264.2 319 50.2
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 2.4e-68 263.5 280 53.9
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 2.4e-68 263.5 280 54.3
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 3.2e-68 263.1 225 62.2
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 3.2e-68 263.1 282 54.6
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 3.2e-68 263.1 289 52.6
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 3.2e-68 263.1 294 50.3
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 4.1e-68 262.7 276 54.7
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 7.0e-68 261.9 287 52.3
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 7.0e-68 261.9 298 52.7
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 9.2e-68 261.5 287 51.9
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 9.2e-68 261.5 275 53.5
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 9.2e-68 261.5 287 50.9
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 1.2e-67 261.2 294 52.0
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 1.2e-67 261.2 221 60.2
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 1.2e-67 261.2 296 50.3
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 1.6e-67 260.8 294 52.0
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 1.6e-67 260.8 286 53.1
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.0e-67 260.4 287 51.6
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 2.0e-67 260.4 298 52.3
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 2.7e-67 260.0 272 54.8
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 2.7e-67 260.0 281 53.0
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 2.7e-67 260.0 274 54.4
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 2.7e-67 260.0 289 52.9
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 3.5e-67 259.6 294 51.0
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 3.5e-67 259.6 281 53.7
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 4.6e-67 259.2 281 52.7
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 6.0e-67 258.8 294 49.3
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 6.0e-67 258.8 294 49.3
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 7.8e-67 258.5 276 54.3
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 7.8e-67 258.5 218 60.6
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.0e-66 258.1 276 55.1
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.3e-66 257.7 276 52.2
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 1.7e-66 257.3 293 51.2
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.7e-66 257.3 289 51.6
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 1.7e-66 257.3 275 53.5
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 1.7e-66 257.3 218 65.6
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 1.7e-66 257.3 276 52.5
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 2.3e-66 256.9 276 54.0
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 2.3e-66 256.9 274 53.6
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 2.3e-66 256.9 276 53.6
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 3.0e-66 256.5 289 52.9
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 3.0e-66 256.5 274 53.6
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 3.9e-66 256.1 281 52.3
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 5.0e-66 255.8 282 53.2
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 5.0e-66 255.8 279 52.3
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 5.0e-66 255.8 280 53.2
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 8.6e-66 255.0 275 53.8
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 8.6e-66 255.0 291 50.5
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.1e-65 254.6 293 51.2
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 1.5e-65 254.2 257 55.6
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 1.9e-65 253.8 223 58.7
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 3.3e-65 253.1 276 51.8
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 3.3e-65 253.1 219 59.8
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 4.3e-65 252.7 274 54.0
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 4.3e-65 252.7 274 54.0
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 5.6e-65 252.3 293 51.5
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 7.3e-65 251.9 284 51.4
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 9.5e-65 251.5 287 51.6
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 9.5e-65 251.5 274 54.4
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.6e-64 250.8 285 51.9
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 2.8e-64 250.0 214 60.7
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 3.6e-64 249.6 289 49.8
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 4.7e-64 249.2 289 51.2
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 6.2e-64 248.8 293 49.8
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 6.2e-64 248.8 289 50.9
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 6.2e-64 248.8 289 50.9
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 6.2e-64 248.8 274 52.6
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 6.2e-64 248.8 274 54.4
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.8e-63 247.3 279 52.3
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 2.3e-63 246.9 274 53.3
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 2.3e-63 246.9 280 51.1
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 6.8e-63 245.4 276 51.8
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 6.8e-63 245.4 274 51.5
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 8.9e-63 245.0 276 51.8
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 2.0e-62 243.8 274 52.2
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 2.0e-62 243.8 274 52.6
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 3.4e-62 243.0 287 51.2
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 9.9e-62 241.5 316 47.5
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 2.2e-61 240.4 252 54.0
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 2.2e-61 240.4 259 52.9
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 1.4e-60 237.7 280 50.7
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 5.4e-60 235.7 269 51.3
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 2.7e-59 233.4 293 47.4
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.3e-58 231.1 362 40.1
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.5e-57 227.6 263 52.9
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 1.5e-57 227.6 272 50.4
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 1.9e-57 227.3 261 51.3
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 2.1e-56 223.8 201 59.7
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.2e-54 218.0 197 62.4
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.0e-50 203.4 363 38.3
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 6.6e-50 202.2 186 57.0
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 4.7e-48 196.1 265 46.8
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.9e-44 184.1 137 69.3
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 1.9e-44 184.1 144 65.3
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 1.9e-44 184.1 237 48.9
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 7.1e-44 182.2 242 45.9
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.6e-43 181.0 296 41.2
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.5e-43 179.9 214 48.6
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 7.8e-43 178.7 168 55.4
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 1.3e-42 177.9 228 46.1
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.6e-40 171.0 228 45.2
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 2.1e-40 170.6 128 70.3
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 4.0e-31 139.8 208 41.8
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 1.2e-22 111.7 214 35.5
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 8.4e-21 105.5 193 37.8
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 3.3e-17 93.6 124 41.9
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 1.3e-16 91.7 220 32.7
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 5.3e-15 86.3 109 44.0
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 4.2e-12 76.6 209 33.0
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.1e-09 68.6 51 72.5
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 9.7e-09 65.5 125 33.6
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 8.2e-08 62.4 51 60.8


User provided reference genes

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