Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 8.6e-302 1039.6 572 100.0
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 9.3e-54 215.7 571 33.5
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.4e-49 201.8 562 30.1
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 3.1e-49 200.7 578 32.0
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 9.0e-49 199.1 401 36.9
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 5.8e-48 196.4 583 28.3
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 4.2e-46 190.3 607 28.3
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 6.0e-45 186.4 574 28.6
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.1e-42 177.9 569 30.6
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.4e-41 175.3 568 29.4
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 7.6e-40 169.5 510 32.0
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.9e-39 167.5 561 32.8
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.2e-37 162.2 511 29.2
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 2.7e-37 161.0 544 28.7
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 2.7e-37 161.0 511 27.8
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.7e-37 161.0 565 29.4
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.6e-37 160.2 512 28.7
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.3e-36 157.9 123 60.2
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 2.3e-36 157.9 509 27.5
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 2.3e-36 157.9 542 30.1
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 5.1e-36 156.8 529 30.6
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.1e-35 155.6 540 27.2
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.1e-35 155.6 508 30.5
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 2.1e-34 151.4 511 29.5
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.2e-34 149.8 535 28.2
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.2e-34 149.8 590 25.8
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 6.2e-34 149.8 463 30.7
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 8.2e-34 149.4 515 28.7
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.1e-33 149.1 525 28.2
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 4.1e-33 147.1 527 28.3
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 5.3e-33 146.7 514 31.7
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 5.3e-33 146.7 530 29.8
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 6.9e-33 146.4 521 31.1
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 9.0e-33 146.0 515 30.1
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 9.0e-33 146.0 518 27.0
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.2e-32 145.6 547 26.3
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.5e-32 145.2 561 28.0
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.0e-32 144.8 504 29.2
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.6e-32 144.4 526 30.0
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 3.4e-32 144.1 508 29.7
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.4e-32 144.1 379 31.7
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 4.5e-32 143.7 530 26.6
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 4.5e-32 143.7 529 30.2
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 7.6e-32 142.9 514 30.2
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.0e-31 142.5 514 27.4
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.3e-31 142.1 521 28.2
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.7e-31 141.7 519 30.1
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.7e-31 141.7 518 29.3
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 2.2e-31 141.4 504 29.4
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 2.2e-31 141.4 529 31.4
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.9e-31 141.0 517 29.2
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 2.9e-31 141.0 539 29.5
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.9e-31 141.0 536 26.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.8e-31 140.6 504 29.4
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 6.5e-31 139.8 501 30.9
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 8.4e-31 139.4 353 31.7
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 1.1e-30 139.0 519 29.9
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 1.1e-30 139.0 513 29.6
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-30 139.0 505 28.9
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.1e-30 139.0 524 29.8
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.1e-30 139.0 502 26.5
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.4e-30 138.7 503 29.8
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.4e-30 138.7 518 29.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.4e-30 138.7 509 27.9
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.9e-30 138.3 502 30.3
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.9e-30 138.3 514 27.8
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 2.5e-30 137.9 527 26.4
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 2.5e-30 137.9 518 27.6
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.5e-30 137.9 530 30.0
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.2e-30 137.1 505 28.9
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 7.2e-30 136.3 569 24.1
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 9.3e-30 136.0 533 26.3
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-29 135.6 504 30.0
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.2e-29 135.6 502 26.7
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.2e-29 135.6 530 29.2
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.2e-29 135.6 530 30.6
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.1e-29 134.8 551 27.2
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 2.1e-29 134.8 513 30.8
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 2.1e-29 134.8 514 28.2
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.1e-29 134.8 534 30.0
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.7e-29 134.4 551 26.0
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.6e-29 133.7 505 28.3
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 7.9e-29 132.9 509 28.5
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 7.9e-29 132.9 505 28.1
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.0e-28 132.5 520 30.0
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.8e-28 131.7 498 28.1
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.3e-28 131.3 514 28.4
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 2.3e-28 131.3 504 29.4
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 3.0e-28 131.0 514 29.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 3.0e-28 131.0 514 29.0
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 3.9e-28 130.6 515 28.2
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 3.9e-28 130.6 513 26.5
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 3.9e-28 130.6 517 30.4
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 6.7e-28 129.8 511 29.0
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 2.5e-27 127.9 508 29.1
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 3.3e-27 127.5 510 27.6
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 5.7e-27 126.7 506 27.3
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.6e-26 125.2 512 27.5
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.2e-26 124.8 542 26.8
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.7e-26 124.0 505 29.1
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 3.7e-26 124.0 502 29.3
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 8.2e-26 122.9 506 29.6
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.1e-25 122.5 505 28.5
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 1.8e-25 121.7 516 28.9
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.0e-24 118.2 498 27.9
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 7.7e-24 116.3 336 28.9
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 2.9e-23 114.4 352 29.3
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.9e-23 114.4 521 25.9
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 5.0e-23 113.6 531 27.7
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 5.0e-23 113.6 590 24.2
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.2e-22 110.9 396 29.5
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 4.2e-22 110.5 340 28.2
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 7.2e-22 109.8 443 31.6
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.6e-21 108.6 539 27.1
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 6.1e-21 106.7 517 26.7
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.1e-21 106.7 405 25.7
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.4e-20 105.5 534 27.0
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.8e-20 105.1 348 28.7
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 1.1e-19 102.4 135 41.5
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 2.5e-19 101.3 345 28.4
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 7.4e-19 99.8 299 30.1
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 6.3e-18 96.7 362 26.5
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 1.8e-17 95.1 229 29.7
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.8e-17 95.1 507 27.4
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 3.1e-17 94.4 191 35.1
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.1e-17 94.0 463 25.1
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 9.1e-17 92.8 535 26.7
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-16 92.4 520 27.5
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.4e-14 85.5 89 48.3
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 2.5e-14 84.7 114 40.4
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.5e-14 83.6 63 61.9
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.5e-14 83.6 63 61.9
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.8e-12 78.6 80 51.2
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.7e-11 72.8 347 24.8
Cfa025520 Carpinus fangiana HOM05D003682 ORTHO05D004224 9.7e-11 72.8 133 31.6
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.8e-09 68.6 75 45.3
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.6e-08 65.5 110 38.2
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.0e-08 65.1 62 56.5
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 3.5e-08 64.3 295 27.1
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 2.5e-06 58.2 269 32.0
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 3.2e-06 57.8 91 37.4
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 5.5e-06 57.0 251 31.9
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 5.5e-06 57.0 75 40.0
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 7.2e-06 56.6 45 55.6


User provided reference genes

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