Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.4e-293 1012.3 530 100.0
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.4e-157 560.5 482 66.6
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.3e-138 496.1 420 65.2
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.6e-129 467.2 387 65.1
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 4.8e-129 465.7 375 66.9
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.2e-125 453.0 364 64.6
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 7.2e-109 398.7 379 58.8
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.1e-106 391.3 394 56.1
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.9e-106 390.6 376 58.2
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 3.3e-106 389.8 376 58.0
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 3.3e-106 389.8 377 57.3
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 9.7e-106 388.3 382 56.3
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.3e-105 387.9 394 56.9
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.3e-105 387.9 377 57.0
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.2e-105 387.1 372 57.8
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.2e-105 387.1 372 57.8
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 2.8e-105 386.7 378 57.4
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 4.8e-105 386.0 369 58.3
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 6.3e-105 385.6 382 56.3
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.1e-104 384.8 373 58.2
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.8e-104 384.0 367 58.0
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 6.9e-104 382.1 379 57.5
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 6.9e-104 382.1 379 57.5
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 6.9e-104 382.1 367 57.8
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 4.5e-103 379.4 378 56.9
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 4.5e-103 379.4 372 57.0
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 5.9e-103 379.0 365 57.0
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 5.9e-103 379.0 394 55.1
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 7.7e-103 378.6 386 56.0
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.0e-102 378.3 390 53.1
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.0e-102 378.3 384 55.7
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.9e-102 376.7 367 56.9
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 5.0e-102 375.9 367 56.9
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 5.0e-102 375.9 367 56.4
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 8.5e-102 375.2 359 57.9
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.1e-101 374.8 366 55.7
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.5e-101 373.6 364 57.4
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 4.2e-101 372.9 367 55.9
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 5.5e-101 372.5 369 55.6
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 7.2e-101 372.1 367 55.6
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 7.2e-101 372.1 366 57.7
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 7.2e-101 372.1 366 55.5
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 9.4e-101 371.7 369 56.1
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.2e-100 371.3 379 55.1
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.2e-100 371.3 367 56.4
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.1e-100 370.5 364 57.1
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 4.6e-100 369.4 369 56.1
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 4.6e-100 369.4 378 54.8
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 6.1e-100 369.0 364 56.3
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 6.1e-100 369.0 364 55.8
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 6.1e-100 369.0 364 56.6
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 6.1e-100 369.0 395 51.6
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 6.1e-100 369.0 378 54.8
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 7.9e-100 368.6 364 55.8
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.4e-99 367.9 378 54.8
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.4e-99 367.9 378 54.8
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.4e-99 367.9 378 54.8
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.4e-99 367.9 378 55.3
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.8e-99 367.5 369 55.0
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.8e-99 367.5 364 55.8
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.8e-99 367.5 378 55.6
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.8e-99 367.5 378 55.6
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.8e-99 367.5 367 55.9
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 3.0e-99 366.7 378 54.8
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 3.0e-99 366.7 364 56.0
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 3.0e-99 366.7 364 56.0
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 3.9e-99 366.3 378 54.8
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 3.9e-99 366.3 364 56.9
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 5.1e-99 365.9 378 55.3
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 5.1e-99 365.9 369 55.3
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 6.7e-99 365.5 416 50.7
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 6.7e-99 365.5 366 55.2
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 8.8e-99 365.2 364 56.6
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.8e-99 365.2 378 55.6
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.1e-98 364.8 367 55.0
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.5e-98 364.4 378 54.5
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.5e-98 364.4 372 54.6
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.0e-98 364.0 364 55.5
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.0e-98 364.0 364 54.7
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.3e-98 363.2 364 55.5
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 3.3e-98 363.2 378 54.0
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 5.7e-98 362.5 378 54.2
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 5.7e-98 362.5 364 56.3
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 7.4e-98 362.1 364 54.7
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 7.4e-98 362.1 364 56.6
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 2.2e-97 360.5 364 54.9
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.2e-97 360.5 364 54.7
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 2.2e-97 360.5 366 56.0
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 2.8e-97 360.1 364 54.4
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 3.7e-97 359.8 364 54.7
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 3.7e-97 359.8 395 52.7
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 3.7e-97 359.8 378 53.7
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 4.8e-97 359.4 364 54.4
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 4.8e-97 359.4 378 54.2
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.1e-96 358.2 367 54.5
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.1e-96 358.2 378 53.4
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.1e-96 358.2 378 53.4
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.4e-96 357.8 363 54.8
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.8e-96 357.5 378 53.2
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.4e-96 357.1 378 53.4
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 3.1e-96 356.7 379 54.1
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 3.1e-96 356.7 360 54.2
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 2.6e-95 353.6 355 54.1
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.5e-95 352.8 386 51.8
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 5.0e-94 349.4 347 57.9
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.1e-93 348.2 364 54.4
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 2.1e-92 344.0 434 48.2
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.6e-92 343.2 361 54.8
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 6.1e-92 342.4 342 54.7
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.8e-91 338.6 364 53.6
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.8e-91 338.6 364 53.6
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 9.1e-88 328.6 363 52.6
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.0e-86 325.1 318 55.3
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.5e-85 321.2 364 50.5
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.6e-84 317.8 362 50.3
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 2.6e-82 310.5 294 57.5
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 6.3e-81 305.8 312 55.1
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 7.0e-80 302.4 309 55.7
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 3.0e-75 287.0 308 54.2
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.0e-71 274.2 296 52.4
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 4.5e-71 273.1 345 48.1
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 1.1e-69 268.5 287 54.4
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.2e-68 265.0 279 51.3
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 5.2e-67 259.6 283 54.1
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 2.0e-58 231.1 282 48.6
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 9.9e-42 175.6 332 39.2
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.9e-40 171.4 248 45.6
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 4.3e-37 160.2 149 59.1
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 7.6e-34 149.4 118 61.0
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.2e-28 132.1 110 61.8
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 3.8e-25 120.6 383 31.1
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.9e-24 118.2 99 60.6
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-22 112.1 135 48.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.7e-22 111.7 108 55.6
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.9e-21 108.2 99 60.6
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 2.6e-18 97.8 68 72.1
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.8e-18 96.7 83 57.8
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 8.4e-17 92.8 225 35.1
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 2.5e-13 81.3 75 49.3
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 5.3e-11 73.6 184 34.2
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.9e-11 73.2 82 53.7
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.3e-06 58.2 47 66.0


User provided reference genes

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