Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_13480 Physcomitrium patens HOM05D002543 ORTHO05D002990 1.3e-117 426.4 211 100.0
Pp3c22_14530 Physcomitrium patens HOM05D002543 ORTHO05D002990 5.7e-49 198.4 128 75.0
Mapoly0014s0058 Marchantia polymorpha HOM05D002543 ORTHO05D002990 1.4e-44 183.7 128 68.0
AagrBONN_evm.TU.Sc2ySwM_117.679 Anthoceros agrestis HOM05D002543 ORTHO05D002990 4.6e-43 178.7 128 68.0
SMO169G0181 Selaginella moellendorffii HOM05D002543 ORTHO05D002990 3.9e-42 175.6 128 66.4
ATR0693G343 Amborella trichopoda HOM05D002543 ORTHO05D002990 6.3e-40 168.3 126 63.5
HanXRQChr13g0388191 Helianthus annuus HOM05D002543 ORTHO05D002990 1.1e-39 167.5 126 62.7
Solyc06g073260.3 Solanum lycopersicum HOM05D002543 ORTHO05D002990 1.8e-39 166.8 126 64.3
PSO761G0053 Papaver somniferum HOM05D002543 ORTHO05D002990 3.1e-39 166.0 126 62.7
PSO210G0417 Papaver somniferum HOM05D002543 ORTHO05D002990 1.2e-38 164.1 126 61.9
HanXRQChr01g0008121 Helianthus annuus HOM05D002543 ORTHO05D002990 1.5e-38 163.7 126 61.1
Sopen06g029620 Solanum pennellii HOM05D002543 ORTHO05D002990 1.5e-38 163.7 126 63.5
PGSC0003DMG400026913 Solanum tuberosum HOM05D002543 ORTHO05D002990 1.5e-38 163.7 126 63.5
CAN.G65.169 Capsicum annuum HOM05D002543 ORTHO05D002990 2.0e-38 163.3 126 62.7
Nn3g21830 Nelumbo nucifera HOM05D002543 ORTHO05D002990 2.0e-38 163.3 126 63.5
Os12g0420200 Oryza sativa ssp. japonica HOM05D002543 ORTHO05D002990 2.6e-38 162.9 126 63.5
CBR_g216 Chara braunii HOM05D002543 ORTHO05D002990 3.4e-38 162.5 127 62.2
ECA248G3036 Erigeron canadensis HOM05D002543 ORTHO05D002990 3.4e-38 162.5 126 61.1
Gohir.A11G274700 Gossypium hirsutum HOM05D002543 ORTHO05D002990 3.4e-38 162.5 126 61.9
RcHm_v2.0_Chr3g0457611 Rosa chinensis HOM05D002543 ORTHO05D002990 3.4e-38 162.5 126 61.9
Gorai.007G308300 Gossypium raimondii HOM05D002543 ORTHO05D002990 5.9e-38 161.8 126 61.9
MD04G1191000 Malus domestica HOM05D002543 ORTHO05D002990 5.9e-38 161.8 126 61.1
Lsat_1_v5_gn_5_157440 Lactuca sativa HOM05D002543 ORTHO05D002990 7.7e-38 161.4 126 61.1
Peaxi162Scf00413g00612 Petunia axillaris HOM05D002543 ORTHO05D002990 7.7e-38 161.4 126 61.9
Ah.04g158450 Amaranthus hybridus HOM05D002543 ORTHO05D002990 1.3e-37 160.6 124 61.3
AT1G09340 Arabidopsis thaliana HOM05D002543 ORTHO05D002990 1.3e-37 160.6 130 60.8
Lalb_Chr04g0260351 Lupinus albus HOM05D002543 ORTHO05D002990 1.3e-37 160.6 126 61.9
Glyma.19G227700 Glycine max HOM05D002543 ORTHO05D002990 1.7e-37 160.2 126 59.5
CARHR009310 Cardamine hirsuta HOM05D002543 ORTHO05D002990 2.2e-37 159.8 130 60.0
COL.COLO4_05521 Corchorus olitorius HOM05D002543 ORTHO05D002990 2.2e-37 159.8 126 61.1
AL1G19830 Arabidopsis lyrata HOM05D002543 ORTHO05D002990 2.9e-37 159.5 130 60.0
BcaB07g34128 Brassica carinata HOM05D002543 ORTHO05D002990 2.9e-37 159.5 130 60.8
BcaC05g24788 Brassica carinata HOM05D002543 ORTHO05D002990 2.9e-37 159.5 130 60.0
A06p06060 Brassica napus HOM05D002543 ORTHO05D002990 2.9e-37 159.5 130 60.0
C05p07330 Brassica napus HOM05D002543 ORTHO05D002990 2.9e-37 159.5 130 60.0
BolC5t29491H Brassica oleracea HOM05D002543 ORTHO05D002990 2.9e-37 159.5 130 60.0
BraA06t23817Z Brassica rapa HOM05D002543 ORTHO05D002990 2.9e-37 159.5 130 60.0
Eucgr.H03311 Eucalyptus grandis HOM05D002543 ORTHO05D002990 2.9e-37 159.5 126 60.3
Thhalv10007937m.g Eutrema salsugineum HOM05D002543 ORTHO05D002990 2.9e-37 159.5 130 60.0
Gohir.D11G284900 Gossypium hirsutum HOM05D002543 ORTHO05D002990 2.9e-37 159.5 126 61.1
Sabra13G0005200 Salix brachista HOM05D002543 ORTHO05D002990 2.9e-37 159.5 126 60.3
Zm00001eb261910 Zea mays HOM05D002543 ORTHO05D002990 2.9e-37 159.5 126 61.9
CSS0021124 Camellia sinensis var. sinensis HOM05D002543 ORTHO05D002990 3.8e-37 159.1 126 59.5
Carub.0001s0868 Capsella rubella HOM05D002543 ORTHO05D002990 3.8e-37 159.1 130 60.0
Glyma.03G230000 Glycine max HOM05D002543 ORTHO05D002990 3.8e-37 159.1 126 59.5
MD12G1203600 Malus domestica HOM05D002543 ORTHO05D002990 3.8e-37 159.1 126 60.3
Medtr7g111860 Medicago truncatula HOM05D002543 ORTHO05D002990 3.8e-37 159.1 126 60.3
MSTRG.27925 Avicennia marina HOM05D002543 ORTHO05D002990 5.0e-37 158.7 126 61.1
CDE08G1278 Ceratophyllum demersum HOM05D002543 ORTHO05D002990 5.0e-37 158.7 126 60.3
PGR031G1645 Punica granatum HOM05D002543 ORTHO05D002990 5.0e-37 158.7 126 60.3
ClCG01G010830 Citrullus lanatus HOM05D002543 ORTHO05D002990 6.5e-37 158.3 126 60.3
Ciclev10001494m.g Citrus clementina HOM05D002543 ORTHO05D002990 6.5e-37 158.3 126 61.1
Lju99A11T81 Lonicera japonica HOM05D002543 ORTHO05D002990 6.5e-37 158.3 126 61.1
Manes.09G179000 Manihot esculenta HOM05D002543 ORTHO05D002990 6.5e-37 158.3 130 57.7
Nitab4.5_0002084g0070 Nicotiana tabacum HOM05D002543 ORTHO05D002990 6.5e-37 158.3 126 60.3
Nitab4.5_0006914g0020 Nicotiana tabacum HOM05D002543 ORTHO05D002990 6.5e-37 158.3 126 60.3
Aa31LG1G5780 Aethionema arabicum HOM05D002543 ORTHO05D002990 8.5e-37 157.9 130 60.0
MSTRG.5153 Avicennia marina HOM05D002543 ORTHO05D002990 8.5e-37 157.9 126 61.1
Cfa006711 Carpinus fangiana HOM05D002543 ORTHO05D002990 8.5e-37 157.9 126 60.3
AUR62006776 Chenopodium quinoa HOM05D002543 ORTHO05D002990 8.5e-37 157.9 126 58.7
Haze_04051 Corylus avellana HOM05D002543 ORTHO05D002990 8.5e-37 157.9 126 60.3
TPR.G1672 Trifolium pratense HOM05D002543 ORTHO05D002990 8.5e-37 157.9 126 60.3
Duzib177G1067 Durio zibethinus HOM05D002543 ORTHO05D002990 1.1e-36 157.5 126 60.3
Psat3g014320 Pisum sativum HOM05D002543 ORTHO05D002990 1.1e-36 157.5 126 60.3
Thecc.05G326100 Theobroma cacao HOM05D002543 ORTHO05D002990 1.1e-36 157.5 126 60.3
Atru.chr2.231 Acer truncatum HOM05D002543 ORTHO05D002990 1.4e-36 157.1 126 59.5
Actinidia16883 Actinidia chinensis HOM05D002543 ORTHO05D002990 1.4e-36 157.1 126 60.3
VMungo1383G0020 Vigna mungo HOM05D002543 ORTHO05D002990 1.4e-36 157.1 126 59.5
Aqoxy7G03338 Aquilegia oxysepala HOM05D002543 ORTHO05D002990 1.9e-36 156.8 126 58.7
CDE02G1117 Ceratophyllum demersum HOM05D002543 ORTHO05D002990 1.9e-36 156.8 126 60.3
AUR62000430 Chenopodium quinoa HOM05D002543 ORTHO05D002990 1.9e-36 156.8 126 57.9
FAN02G0698 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.9e-36 156.8 126 61.1
Prupe.6G309500 Prunus persica HOM05D002543 ORTHO05D002990 1.9e-36 156.8 126 59.5
CANSAT54G0111 Cannabis sativa HOM05D002543 ORTHO05D002990 2.5e-36 156.4 126 59.5
Ca_09289_v3 Cicer arietinum L. HOM05D002543 ORTHO05D002990 2.5e-36 156.4 126 59.5
FvH4_6g07910 Fragaria vesca HOM05D002543 ORTHO05D002990 2.5e-36 156.4 126 61.1
FAN05G0666 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.5e-36 156.4 126 61.1
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.5e-36 156.4 126 61.1
FAN14G2557 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.5e-36 156.4 126 61.1
Rhsim11G0098700 Rhododendron simsii HOM05D002543 ORTHO05D002990 2.5e-36 156.4 126 60.3
Sp1g07950 Schrenkiella parvula HOM05D002543 ORTHO05D002990 2.5e-36 156.4 130 58.5
Potri.013G006100 Populus trichocarpa HOM05D002543 ORTHO05D002990 3.2e-36 156.0 126 59.5
arahy.Tifrunner.gnm1.ann1.GJPT5D Arachis hypogaea HOM05D002543 ORTHO05D002990 4.2e-36 155.6 126 60.3
Cpa.g.sc48.194 Carica papaya HOM05D002543 ORTHO05D002990 4.2e-36 155.6 126 59.5
Phvul.001G223800 Phaseolus vulgaris HOM05D002543 ORTHO05D002990 4.2e-36 155.6 126 59.5
QL03p017109 Quercus lobata HOM05D002543 ORTHO05D002990 4.2e-36 155.6 126 57.9
QL03p017392 Quercus lobata HOM05D002543 ORTHO05D002990 4.2e-36 155.6 126 57.9
SalBow7G2281 Salvia bowleyana HOM05D002543 ORTHO05D002990 4.2e-36 155.6 126 58.7
TWI56G1324 Tripterygium wilfordii HOM05D002543 ORTHO05D002990 5.5e-36 155.2 126 59.5
EL10Ac4g09505 Beta vulgaris HOM05D002543 ORTHO05D002990 7.2e-36 154.8 126 57.9
Migut.N00952 Erythranthe guttata HOM05D002543 ORTHO05D002990 7.2e-36 154.8 126 58.7
Cc02_g35140 Coffea canephora HOM05D002543 ORTHO05D002990 9.4e-36 154.5 126 58.7
THA.LOC104816855 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 9.4e-36 154.5 126 59.5
TAR362G1343 Trochodendron aralioides HOM05D002543 ORTHO05D002990 9.4e-36 154.5 126 59.5
Lj1g0015240 Lotus japonicus HOM05D002543 ORTHO05D002990 1.2e-35 154.1 126 57.9
Sed0006506 Sechium edule HOM05D002543 ORTHO05D002990 1.2e-35 154.1 126 59.5
Hma1.2p1_0008F-1.1_g005360 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 1.6e-35 153.7 126 59.5
Hma1.2p1_1808F.1_g303465 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 1.6e-35 153.7 126 59.5
SGA_v2.0_scaffold5G02903 Striga asiatica HOM05D002543 ORTHO05D002990 2.1e-35 153.3 126 57.9
Cre10.g435800 Chlamydomonas reinhardtii HOM05D002543 ORTHO05D002990 2.7e-35 152.9 125 58.4
CiPaw.07G031800 Carya illinoinensis HOM05D002543 ORTHO05D002990 3.6e-35 152.5 126 57.1
CsaV3_4G030580 Cucumis sativus L. HOM05D002543 ORTHO05D002990 6.1e-35 151.8 124 58.9
Hund21861 Selenicereus undatus HOM05D002543 ORTHO05D002990 6.1e-35 151.8 126 57.9
THA.LOC104820540 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 6.1e-35 151.8 126 58.7
vmacro01588 Vaccinium macrocarpon HOM05D002543 ORTHO05D002990 6.1e-35 151.8 126 57.9
GSVIVG01031272001 Vitis vinifera HOM05D002543 ORTHO05D002990 6.1e-35 151.8 126 57.9
Dinv30917 Davidia involucrata HOM05D002543 ORTHO05D002990 1.0e-34 151.0 126 56.3
Potri.005G010266 Populus trichocarpa HOM05D002543 ORTHO05D002990 1.4e-34 150.6 126 57.9
DCAR_005274 Daucus carota HOM05D002543 ORTHO05D002990 1.8e-34 150.2 126 59.5
Oeu064827.1 Olea europaea HOM05D002543 ORTHO05D002990 8.8e-34 147.9 122 59.0
unitig_749.g13404 Utricularia gibba HOM05D002543 ORTHO05D002990 9.7e-33 144.4 126 54.8
Dinv30918 Davidia involucrata HOM05D002543 ORTHO05D002990 2.8e-32 142.9 126 54.0
MBI19_g32691_MAGBIO Magnolia biondii HOM05D002543 ORTHO05D002990 3.7e-32 142.5 126 57.1
C08p49510 Brassica napus HOM05D002543 ORTHO05D002990 1.8e-31 140.2 117 59.0
Hma1.2p1_0045F.1_g026490 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 3.1e-31 139.4 127 54.3
BcaC07g41887 Brassica carinata HOM05D002543 ORTHO05D002990 5.9e-30 135.2 137 53.3
BcaB04g17721 Brassica carinata HOM05D002543 ORTHO05D002990 1.7e-29 133.7 161 47.8
BcaC07g41892 Brassica carinata HOM05D002543 ORTHO05D002990 2.2e-29 133.3 128 54.7
BcaC07g41896 Brassica carinata HOM05D002543 ORTHO05D002990 3.8e-29 132.5 124 54.8
arahy.Tifrunner.gnm1.ann1.E4P10T Arachis hypogaea HOM05D002543 ORTHO05D002990 6.5e-29 131.7 128 54.7
A09p65530 Brassica napus HOM05D002543 ORTHO05D002990 1.4e-28 130.6 123 55.3
BraA09t41898Z Brassica rapa HOM05D002543 ORTHO05D002990 1.4e-28 130.6 123 55.3
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 5.5e-28 128.6 104 56.7
BcaC07g41890 Brassica carinata HOM05D002543 ORTHO05D002990 1.6e-27 127.1 133 53.4
Manes.16G048915 Manihot esculenta HOM05D002543 ORTHO05D002990 5.0e-21 105.5 100 51.0
MELO3C008920.2 Cucumis melo HOM05D002543 ORTHO05D002990 1.1e-17 94.4 77 59.7
Actinidia27688 Actinidia chinensis HOM05D002543 ORTHO05D002990 5.7e-17 92.0 83 56.6
A06p06080 Brassica napus HOM05D002543 ORTHO05D041198 1.4e-15 87.4 123 46.3
HanXRQChr03g0066731 Helianthus annuus HOM05D002543 ORTHO05D002990 5.3e-15 85.5 98 43.9
BcaB01g02330 Brassica carinata HOM05D003555 ORTHO05D002990 1.2e-14 84.3 87 51.7
Cre10.g440050 Chlamydomonas reinhardtii HOM05D002543 ORTHO05D002990 4.0e-10 69.3 130 33.1
Actinidia35506 Actinidia chinensis HOM05D002543 ORTHO05D002990 6.8e-10 68.6 53 58.5
COL.COLO4_09096 Corchorus olitorius HOM05D002543 ORTHO05D002990 1.7e-08 63.9 127 33.1
ATR0626G321 Amborella trichopoda HOM05D002543 ORTHO05D002990 2.2e-08 63.5 127 32.3
CBR_g28014 Chara braunii HOM05D002543 ORTHO05D002990 3.7e-08 62.8 128 32.8
PGSC0003DMG400012888 Solanum tuberosum HOM05D002543 ORTHO05D002990 3.7e-08 62.8 127 32.3
Nitab4.5_0000458g0020 Nicotiana tabacum HOM05D002543 ORTHO05D002990 4.8e-08 62.4 127 31.5
Peaxi162Scf01607g00112 Petunia axillaris HOM05D002543 ORTHO05D002990 8.3e-08 61.6 127 31.5
Nitab4.5_0008435g0010 Nicotiana tabacum HOM05D002543 ORTHO05D002990 1.4e-07 60.8 127 30.7
CAN.G232.6 Capsicum annuum HOM05D002543 ORTHO05D002990 1.8e-07 60.5 127 30.7
BraA06t23821Z Brassica rapa HOM05D002543 ORTHO05D041198 4.1e-07 59.3 62 48.4
Pp3c3_30330 Physcomitrium patens HOM05D002543 ORTHO05D002990 1.2e-06 57.8 125 28.8
Os07g0212200 Oryza sativa ssp. japonica HOM05D002543 ORTHO05D002990 2.7e-06 56.6 121 29.8
BcaC02g12651 Brassica carinata HOM05D003555 ORTHO05D095367 3.5e-06 56.2 89 40.4


User provided reference genes

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