Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 8.9e-165 583.6 300 100.0
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.6e-148 528.9 297 91.2
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 5.7e-103 378.3 302 67.2
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.4e-101 373.6 297 69.7
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 7.7e-84 314.7 291 60.1
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 4.4e-71 272.3 207 66.7
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.0e-68 263.5 287 50.2
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.7e-68 263.1 287 50.2
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 8.5e-67 258.1 211 60.2
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 7.2e-66 255.0 256 53.5
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 3.6e-65 252.7 255 53.3
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 4.7e-65 252.3 207 60.4
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 6.1e-65 251.9 284 51.8
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 1.4e-64 250.8 254 52.4
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 1.4e-64 250.8 254 54.7
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 1.8e-64 250.4 254 52.4
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.3e-64 250.0 258 51.9
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 3.0e-64 249.6 213 59.6
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 4.0e-64 249.2 222 57.7
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 5.2e-64 248.8 218 58.7
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 5.2e-64 248.8 208 58.7
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 5.2e-64 248.8 302 48.3
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 6.8e-64 248.4 253 53.8
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 6.8e-64 248.4 286 51.7
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 8.8e-64 248.1 220 58.6
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 1.2e-63 247.7 207 60.4
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.5e-63 247.3 296 49.3
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 1.5e-63 247.3 230 57.4
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 2.6e-63 246.5 295 49.8
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 2.6e-63 246.5 210 60.0
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 2.6e-63 246.5 207 59.4
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 7.5e-63 245.0 243 52.3
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 9.8e-63 244.6 302 47.7
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 9.8e-63 244.6 301 49.5
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 1.3e-62 244.2 217 56.7
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 2.2e-62 243.4 302 47.4
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 2.2e-62 243.4 302 48.3
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.2e-62 243.4 217 54.8
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 2.2e-62 243.4 210 58.6
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 2.2e-62 243.4 262 52.3
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 3.7e-62 242.7 222 55.9
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 3.7e-62 242.7 210 57.6
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 3.7e-62 242.7 222 55.0
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 6.3e-62 241.9 295 49.2
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 6.3e-62 241.9 276 48.6
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 8.3e-62 241.5 253 52.2
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 1.1e-61 241.1 292 49.0
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.1e-61 241.1 293 47.8
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.1e-61 241.1 253 52.2
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 1.8e-61 240.4 286 50.7
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.8e-61 240.4 249 55.0
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 1.8e-61 240.4 211 57.3
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 2.4e-61 240.0 211 58.3
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 2.4e-61 240.0 212 56.1
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 2.4e-61 240.0 210 60.5
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 3.1e-61 239.6 252 52.4
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 3.1e-61 239.6 217 56.2
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 3.1e-61 239.6 214 57.9
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.1e-61 239.6 271 48.7
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 4.1e-61 239.2 221 53.8
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 5.4e-61 238.8 253 51.8
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 5.4e-61 238.8 312 46.5
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 5.4e-61 238.8 312 46.5
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 5.4e-61 238.8 274 48.2
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 5.4e-61 238.8 267 49.1
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 7.0e-61 238.4 216 54.6
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 7.0e-61 238.4 216 54.6
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 7.0e-61 238.4 237 54.0
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 1.2e-60 237.7 261 51.7
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.2e-60 237.7 241 52.3
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.2e-60 237.7 215 56.7
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 1.6e-60 237.3 215 58.1
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 1.6e-60 237.3 234 53.0
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 2.0e-60 236.9 283 47.0
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.0e-60 236.9 212 56.1
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 2.0e-60 236.9 253 52.6
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 3.5e-60 236.1 214 55.1
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 3.5e-60 236.1 279 51.3
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 3.5e-60 236.1 275 49.1
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 5.9e-60 235.3 275 50.5
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 7.7e-60 235.0 213 54.9
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 1.3e-59 234.2 274 51.1
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.7e-59 233.8 225 52.9
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.9e-59 233.0 216 56.0
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 5.0e-59 232.3 211 57.3
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 1.5e-58 230.7 275 49.5
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 2.5e-58 229.9 254 48.4
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 5.6e-58 228.8 256 50.4
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 9.5e-58 228.0 268 50.0
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 9.5e-58 228.0 271 48.7
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 1.2e-57 227.6 269 47.6
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 3.6e-57 226.1 223 52.9
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 4.7e-57 225.7 249 49.4
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 8.0e-57 224.9 228 50.9
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 2.3e-56 223.4 217 54.4
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 3.0e-56 223.0 217 52.5
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 6.8e-56 221.9 302 44.4
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 8.9e-56 221.5 234 52.1
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 2.6e-55 219.9 263 46.8
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 5.7e-55 218.8 219 52.1
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 9.8e-55 218.0 196 55.6
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 9.8e-55 218.0 190 58.9
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 4.9e-54 215.7 204 54.4
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.4e-53 214.2 210 55.2
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 1.8e-53 213.8 253 45.8
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 1.6e-52 210.7 218 51.4
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 8.6e-51 204.9 191 56.0
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 3.3e-50 203.0 226 50.4
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.6e-49 200.7 208 52.9
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 3.2e-45 186.4 184 54.3
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 2.0e-44 183.7 210 49.0
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 2.3e-43 180.3 194 50.0
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 2.3e-43 180.3 194 50.0
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 6.6e-43 178.7 184 52.7
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.1e-40 171.4 205 46.3
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 1.3e-38 164.5 135 60.7
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 3.7e-38 162.9 118 68.6
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 2.4e-37 160.2 178 50.6
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.6e-36 156.0 140 57.1
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 7.8e-36 155.2 211 40.3
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.7e-35 154.1 131 58.0
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 5.1e-35 152.5 230 40.9
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 6.2e-33 145.6 198 44.9
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.9e-32 141.7 173 45.1
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 4.7e-25 119.4 61 91.8
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.4e-22 108.6 132 48.5
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 1.5e-18 97.8 127 43.3
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.0e-16 88.6 186 33.9
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 1.7e-14 84.3 58 62.1
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.9e-10 70.9 55 61.8
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 9.6e-10 68.6 50 58.0
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.8e-09 66.2 82 45.1
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 1.8e-08 64.3 47 66.0
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 3.8e-06 56.6 81 42.0


User provided reference genes

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