Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.4e-270 934.5 491 100.0
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.4e-159 566.2 482 66.6
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 6.6e-125 451.8 394 61.4
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.1e-122 443.0 433 57.7
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 7.6e-121 438.3 390 62.1
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.8e-112 409.5 380 58.7
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.4e-103 380.9 378 55.8
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 5.1e-101 372.5 380 55.3
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 5.1e-101 372.5 376 55.9
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 8.7e-101 371.7 376 55.6
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 4.3e-100 369.4 378 55.0
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 3.6e-99 366.3 367 55.0
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 8.1e-99 365.2 377 54.6
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.4e-98 364.4 379 54.4
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.4e-98 364.4 379 54.4
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.4e-98 364.4 377 54.6
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 3.1e-98 363.2 366 53.8
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.1e-98 363.2 367 54.5
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 3.1e-98 363.2 383 54.0
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 3.1e-98 363.2 377 54.4
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.1e-98 363.2 378 54.5
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 4.0e-98 362.8 367 54.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 5.3e-98 362.5 367 54.0
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 5.3e-98 362.5 383 54.0
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.2e-97 361.3 367 55.6
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.2e-97 361.3 366 54.9
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 2.0e-97 360.5 378 55.3
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.0e-97 360.5 367 54.0
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.6e-97 360.1 378 54.2
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 2.6e-97 360.1 367 55.0
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 4.5e-97 359.4 379 53.0
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 4.5e-97 359.4 378 54.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 4.5e-97 359.4 379 53.8
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 5.8e-97 359.0 367 55.0
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 5.8e-97 359.0 416 50.2
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 7.6e-97 358.6 377 53.1
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.9e-97 358.2 373 55.0
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.9e-97 358.2 372 55.4
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.9e-97 358.2 372 55.4
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 9.9e-97 358.2 367 54.5
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 9.9e-97 358.2 378 54.2
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 2.2e-96 357.1 365 54.8
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.9e-96 356.7 378 53.4
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 2.9e-96 356.7 366 53.0
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 3.8e-96 356.3 378 53.4
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 3.8e-96 356.3 375 54.4
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 4.9e-96 355.9 378 53.2
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 4.9e-96 355.9 378 53.2
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 4.9e-96 355.9 378 53.2
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 4.9e-96 355.9 367 53.1
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 6.4e-96 355.5 378 54.2
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.1e-95 354.8 378 53.7
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.4e-95 354.4 378 54.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.9e-95 354.0 385 51.9
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 2.4e-95 353.6 373 53.6
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.2e-95 353.2 364 53.8
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.2e-95 353.2 378 52.9
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 3.2e-95 353.2 394 51.8
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.2e-95 353.2 395 51.6
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.2e-95 353.2 395 51.6
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 4.2e-95 352.8 373 53.4
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 4.2e-95 352.8 367 53.7
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 5.4e-95 352.4 383 52.0
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 5.4e-95 352.4 364 54.7
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 5.4e-95 352.4 367 54.0
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 7.1e-95 352.1 370 53.2
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 7.1e-95 352.1 365 52.6
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 9.3e-95 351.7 366 52.7
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.2e-94 351.3 370 53.8
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.6e-94 350.9 378 52.9
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.1e-94 350.5 370 52.7
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 2.1e-94 350.5 370 53.0
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.7e-94 350.1 384 52.1
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 2.7e-94 350.1 366 52.7
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 3.5e-94 349.7 378 52.1
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.5e-94 349.7 377 52.5
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.0e-94 349.0 367 52.6
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 6.0e-94 349.0 376 52.4
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 6.0e-94 349.0 378 51.6
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 7.9e-94 348.6 366 53.6
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.0e-93 348.2 366 53.0
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.3e-93 347.8 367 52.3
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.3e-93 347.8 370 52.7
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.8e-93 347.4 378 51.6
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.8e-93 347.4 378 52.1
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 2.3e-93 347.1 372 52.4
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.9e-93 346.3 370 52.7
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 3.9e-93 346.3 378 52.6
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 5.1e-93 345.9 392 49.7
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 8.7e-93 345.1 363 53.2
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-92 344.7 378 51.3
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.1e-92 344.7 378 51.3
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.1e-92 344.7 378 51.3
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.5e-92 344.4 380 49.5
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.5e-92 344.4 378 51.3
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.5e-92 344.4 363 52.6
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 2.5e-92 343.6 360 52.2
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 2.5e-92 343.6 367 52.9
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 3.3e-92 343.2 370 52.7
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 4.3e-92 342.8 373 53.1
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 7.4e-92 342.0 378 50.8
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.6e-91 340.9 375 51.2
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.1e-90 336.7 366 51.1
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 3.1e-90 336.7 414 50.5
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 7.6e-89 332.0 383 50.9
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.0e-88 331.6 366 50.5
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.9e-88 329.3 373 51.2
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.1e-87 328.2 378 51.1
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.1e-87 328.2 378 51.1
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 2.1e-86 323.9 342 52.6
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.0e-85 321.6 363 51.0
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 3.9e-85 319.7 327 54.1
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 9.6e-84 315.1 370 49.5
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.5e-81 306.2 365 47.7
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.7e-80 304.3 316 52.2
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.3e-77 294.7 295 55.3
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.1e-74 285.0 312 52.9
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.5e-73 281.2 309 53.7
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 5.5e-71 272.7 308 52.3
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 2.2e-67 260.8 345 47.0
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.4e-66 257.3 297 48.8
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 2.6e-65 253.8 287 52.3
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.1e-63 248.4 279 49.1
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.5e-60 238.0 283 51.9
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 7.2e-55 219.2 282 47.2
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 5.5e-39 166.4 254 45.3
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 4.0e-37 160.2 144 59.7
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 4.9e-35 153.3 328 34.1
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 8.6e-32 142.5 117 60.7
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.2e-26 124.0 100 58.0
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.7e-25 120.9 99 59.6
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 4.7e-22 110.2 342 31.0
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.2e-21 106.7 158 39.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.8e-21 106.3 99 52.5
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.6e-20 104.4 114 56.1
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 4.9e-19 100.1 67 71.6
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.2e-18 95.9 162 36.4
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 3.0e-16 90.9 90 57.8
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 5.6e-15 86.7 76 52.6
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.0e-12 78.2 88 52.3
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.0e-08 65.9 142 33.8


User provided reference genes

Program Settings