Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.7e-160 569.3 290 100.0
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.7e-149 532.7 290 93.1
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 5.1e-149 531.2 290 93.4
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 9.3e-119 430.6 284 72.5
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 5.3e-114 414.8 289 70.6
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.3e-112 410.2 290 68.6
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.8e-112 408.7 290 69.0
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 4.9e-112 408.3 290 69.7
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 1.4e-111 406.8 290 67.9
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 3.2e-111 405.6 290 69.0
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.2e-110 403.7 290 67.6
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 1.2e-110 403.7 290 68.3
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.6e-110 403.3 289 68.5
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 2.1e-110 402.9 289 68.5
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 3.5e-110 402.1 290 69.3
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 7.9e-110 401.0 290 67.6
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 1.0e-109 400.6 290 66.9
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 1.0e-109 400.6 288 68.8
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 1.3e-109 400.2 291 68.0
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 1.8e-109 399.8 290 66.6
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 2.3e-109 399.4 285 68.4
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 3.0e-109 399.1 288 67.7
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.0e-109 399.1 290 67.9
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 3.9e-109 398.7 289 66.8
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 5.1e-109 398.3 290 67.2
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 5.1e-109 398.3 287 68.6
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 6.7e-109 397.9 290 66.9
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 6.7e-109 397.9 290 69.0
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.1e-108 397.1 287 67.9
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 1.5e-108 396.7 302 65.6
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 1.5e-108 396.7 290 67.2
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 1.9e-108 396.4 289 66.4
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.3e-108 395.6 287 67.2
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 4.3e-108 395.2 290 66.6
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 5.7e-108 394.8 287 66.2
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 5.7e-108 394.8 289 67.5
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 5.7e-108 394.8 287 68.6
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 5.7e-108 394.8 290 66.6
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 7.4e-108 394.4 285 66.0
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 7.4e-108 394.4 290 66.6
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 1.3e-107 393.7 290 65.9
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 1.3e-107 393.7 289 67.1
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 1.3e-107 393.7 290 65.9
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 1.6e-107 393.3 289 66.8
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 1.6e-107 393.3 285 65.6
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 2.1e-107 392.9 289 66.1
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 3.7e-107 392.1 290 66.2
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 4.8e-107 391.7 289 66.1
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 4.8e-107 391.7 289 65.7
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 6.3e-107 391.3 290 66.6
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 6.3e-107 391.3 290 65.9
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 6.3e-107 391.3 289 67.5
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 8.2e-107 391.0 289 65.7
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 1.4e-106 390.2 287 66.2
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.4e-106 390.2 289 66.4
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 1.8e-106 389.8 289 67.1
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 3.1e-106 389.0 289 66.1
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 4.1e-106 388.7 293 65.9
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 4.1e-106 388.7 290 66.6
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 4.1e-106 388.7 290 66.2
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 4.1e-106 388.7 290 66.2
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 5.3e-106 388.3 289 65.7
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 1.2e-105 387.1 289 65.4
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.2e-105 387.1 289 66.8
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 1.5e-105 386.7 289 64.7
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.5e-105 386.7 289 65.4
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 2.6e-105 386.0 289 64.0
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 2.6e-105 386.0 289 65.1
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 2.6e-105 386.0 290 64.8
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 3.4e-105 385.6 290 64.8
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 3.4e-105 385.6 289 65.4
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.4e-105 385.6 289 65.4
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 3.4e-105 385.6 288 65.6
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 4.5e-105 385.2 290 65.2
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 5.9e-105 384.8 289 65.1
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 7.6e-105 384.4 289 64.7
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 7.6e-105 384.4 289 64.0
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 1.0e-104 384.0 289 64.7
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 1.0e-104 384.0 287 65.2
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.7e-104 383.3 289 64.7
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 1.7e-104 383.3 290 64.5
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 2.9e-104 382.5 290 64.1
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 5.0e-104 381.7 289 65.4
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 5.0e-104 381.7 307 63.8
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 6.5e-104 381.3 289 63.7
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 6.5e-104 381.3 294 64.3
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 6.5e-104 381.3 290 63.4
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 1.1e-103 380.6 289 64.0
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 1.1e-103 380.6 289 64.0
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 1.1e-103 380.6 289 64.0
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 1.1e-103 380.6 287 64.1
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 1.4e-103 380.2 289 63.3
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 1.9e-103 379.8 289 63.0
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 1.9e-103 379.8 289 63.3
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 2.5e-103 379.4 289 63.7
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 2.5e-103 379.4 289 63.7
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 2.5e-103 379.4 289 64.0
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 2.5e-103 379.4 289 63.7
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 2.5e-103 379.4 289 63.7
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 3.2e-103 379.0 289 64.7
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 3.2e-103 379.0 290 64.1
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 4.2e-103 378.6 289 64.0
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 4.2e-103 378.6 289 63.7
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 4.2e-103 378.6 289 63.7
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 4.2e-103 378.6 323 60.4
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 5.5e-103 378.3 289 64.4
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 7.2e-103 377.9 288 64.9
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 9.3e-103 377.5 287 64.8
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 4.6e-102 375.2 287 65.2
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 6.1e-102 374.8 289 63.3
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 7.9e-102 374.4 289 63.3
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 7.9e-102 374.4 289 62.6
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.3e-101 373.6 287 64.5
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.3e-101 373.6 306 62.4
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 1.8e-101 373.2 289 63.7
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 6.7e-101 371.3 287 63.4
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 1.3e-99 367.1 303 61.1
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 1.3e-99 367.1 290 61.7
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 6.3e-99 364.8 291 62.9
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 8.2e-99 364.4 292 64.0
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.1e-98 362.5 293 62.1
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 5.3e-98 361.7 302 61.9
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.3e-96 357.1 261 68.2
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 1.7e-96 356.7 290 62.8
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.7e-96 356.7 293 61.8
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 1.7e-96 356.7 289 60.2
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 2.7e-94 349.4 289 60.6
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 2.7e-94 349.4 289 61.6
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 3.6e-94 349.0 256 65.6
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.4e-93 347.1 292 60.3
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 1.8e-93 346.7 285 61.8
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 3.0e-93 345.9 291 60.5
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 3.9e-93 345.5 272 62.5
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 3.9e-93 345.5 291 60.1
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 5.1e-93 345.1 291 60.5
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.5e-92 343.6 294 58.8
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 1.3e-91 340.5 293 58.4
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 6.3e-91 338.2 256 63.7
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.8e-90 336.7 448 43.8
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 4.1e-90 335.5 283 59.4
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 1.2e-89 334.0 300 59.0
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 1.4e-85 320.5 308 55.2
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 1.8e-85 320.1 234 67.1
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 3.0e-85 319.3 232 67.2
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 2.2e-83 313.2 231 66.2
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 1.0e-80 304.3 283 54.8
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 3.6e-78 295.8 287 55.1
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 3.7e-75 285.8 298 51.7
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 5.3e-74 282.0 281 50.9
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 2.2e-72 276.6 287 51.2
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 5.2e-69 265.4 203 62.6
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.8e-58 230.3 270 48.1
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 4.1e-58 229.2 164 70.1
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 9.2e-50 201.4 152 61.2
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 8.3e-43 178.3 113 72.6
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 2.0e-41 173.7 150 55.3
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 5.2e-37 159.1 129 61.2
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 4.0e-21 106.3 82 68.3
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.3e-19 101.3 104 52.9
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.4e-18 97.8 104 51.9
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 5.4e-18 95.9 104 51.0
Cfa026260 Carpinus fangiana HOM05D004135 ORTHO05D125562 1.6e-17 94.4 299 29.8
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 6.0e-17 92.4 130 40.8
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 2.3e-16 90.5 75 58.7
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 3.9e-16 89.7 61 68.9
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 1.1e-15 88.2 85 55.3
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 9.6e-15 85.1 143 37.8
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 1.1e-13 81.6 72 59.7
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 7.6e-12 75.5 57 56.1
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 9.9e-12 75.1 70 52.9
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 2.4e-10 70.5 58 56.9
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 2.4e-10 70.5 58 56.9
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 5.1e-08 62.8 56 62.5
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 5.6e-07 59.3 65 52.3


User provided reference genes

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