Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_12570 Physcomitrium patens HOM05D002009 ORTHO05D311482 4.0e-93 344.7 173 100.0
Pp3c25_2990 Physcomitrium patens HOM05D002009 ORTHO05D005728 5.2e-85 317.8 170 90.6
Pp3c13_14630 Physcomitrium patens HOM05D002009 ORTHO05D005728 8.4e-83 310.5 170 89.4
Pp3c10_11570 Physcomitrium patens HOM05D002009 ORTHO05D005728 1.2e-81 306.6 170 88.2
Pp3c9_12701 Physcomitrium patens HOM05D002009 ORTHO05D005728 1.2e-81 306.6 170 86.5
Pp3c1_290 Physcomitrium patens HOM05D002009 ORTHO05D005728 1.1e-77 293.5 167 86.8
Pp3c16_6050 Physcomitrium patens HOM05D002009 ORTHO05D005728 6.9e-77 290.8 156 89.7
Pp3c2_18826 Physcomitrium patens HOM05D002009 ORTHO05D314561 1.9e-66 256.1 134 91.8
Pp3c10_25280 Physcomitrium patens HOM05D002009 ORTHO05D005728 1.3e-64 250.0 150 83.3
Pp3c4_24900 Physcomitrium patens HOM05D002009 ORTHO05D317699 3.5e-49 198.7 129 76.0
Pp3c6_15720 Physcomitrium patens HOM05D002009 ORTHO05D005728 2.2e-46 189.5 161 63.4
Pp3c2_29370 Physcomitrium patens HOM05D002009 ORTHO05D005728 6.9e-37 157.9 101 76.2
Pp3c16_17860 Physcomitrium patens HOM05D002009 ORTHO05D005728 3.2e-34 149.1 82 87.8
Pp3c14_3980 Physcomitrium patens HOM05D002009 ORTHO05D311208 2.0e-12 76.6 46 71.7
HanXRQChr12g0380541 Helianthus annuus HOM05D002009 ORTHO05D005728 8.0e-09 64.7 103 34.0
PSO017G4864 Papaver somniferum HOM05D002009 ORTHO05D005728 8.0e-09 64.7 165 27.3
PSO170G4442 Papaver somniferum HOM05D002009 ORTHO05D005728 8.0e-09 64.7 165 27.3
Pp3c27_3350 Physcomitrium patens HOM05D002009 ORTHO05D005728 1.0e-08 64.3 103 31.1
CBR_g38906 Chara braunii HOM05D002009 ORTHO05D005728 1.8e-08 63.5 117 32.5
Mapoly0087s0021 Marchantia polymorpha HOM05D002009 ORTHO05D005728 1.8e-08 63.5 103 34.0
Sed0004291 Sechium edule HOM05D002009 ORTHO05D005728 1.8e-08 63.5 145 29.0
Pp3c6_19160 Physcomitrium patens HOM05D002009 ORTHO05D005728 2.3e-08 63.2 103 30.1
Atru.chr4.962 Acer truncatum HOM05D002009 ORTHO05D005728 3.0e-08 62.8 103 33.0
ECA233G2868 Erigeron canadensis HOM05D002009 ORTHO05D005728 3.0e-08 62.8 103 34.0
Glyma.06G155300 Glycine max HOM05D002009 ORTHO05D005728 4.0e-08 62.4 103 33.0
Os11g0186400 Oryza sativa ssp. japonica HOM05D002009 ORTHO05D005728 4.0e-08 62.4 103 32.0
PRCOL_00002177 Prasinoderma coloniale HOM05D002009 ORTHO05D005728 4.0e-08 62.4 162 29.0
Prupe.4G273600 Prunus persica HOM05D002009 ORTHO05D005728 4.0e-08 62.4 103 33.0
ATR0584G016 Amborella trichopoda HOM05D002009 ORTHO05D005728 6.8e-08 61.6 103 33.0
MBI03_g39989_MAGBIO Magnolia biondii HOM05D002009 ORTHO05D005728 6.8e-08 61.6 103 32.0
DCAR_001198 Daucus carota HOM05D002009 ORTHO05D005728 8.8e-08 61.2 103 32.0
Eucgr.I00173 Eucalyptus grandis HOM05D002009 ORTHO05D005728 8.8e-08 61.2 103 34.0
Glyma.04G210700 Glycine max HOM05D002009 ORTHO05D005728 8.8e-08 61.2 103 33.0
arahy.Tifrunner.gnm1.ann1.7D624Q Arachis hypogaea HOM05D002009 ORTHO05D005728 1.2e-07 60.8 103 33.0
arahy.Tifrunner.gnm1.ann1.BG9WT0 Arachis hypogaea HOM05D002009 ORTHO05D005728 1.2e-07 60.8 103 33.0
HPP92_005659 Vanilla planifolia HOM05D002009 ORTHO05D005728 1.2e-07 60.8 103 33.0
Cfa025827 Carpinus fangiana HOM05D002009 ORTHO05D005728 1.5e-07 60.5 145 27.6
Ca_16976_v3 Cicer arietinum L. HOM05D002009 ORTHO05D005728 1.5e-07 60.5 103 32.0
Lalb_Chr23g0272641 Lupinus albus HOM05D002009 ORTHO05D005728 1.5e-07 60.5 103 33.0
Solyc10g081250.3 Solanum lycopersicum HOM05D002009 ORTHO05D005728 1.5e-07 60.5 103 32.0
Sopen10g031750 Solanum pennellii HOM05D002009 ORTHO05D005728 1.5e-07 60.5 103 32.0
THA.LOC104818425 Tarenaya hassleriana HOM05D002009 ORTHO05D005728 1.5e-07 60.5 103 32.0
CAN.G128.115 Capsicum annuum HOM05D002009 ORTHO05D005728 2.0e-07 60.1 103 32.0
Duzib268G1329 Durio zibethinus HOM05D002009 ORTHO05D005728 2.0e-07 60.1 103 31.1
Manes.12G077400 Manihot esculenta HOM05D002009 ORTHO05D005728 2.0e-07 60.1 103 33.0
Phvul.009G155200 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 2.0e-07 60.1 103 33.0
VMungo1309G0642 Vigna mungo HOM05D002009 ORTHO05D005728 2.0e-07 60.1 103 31.1
MELO3C024596.2 Cucumis melo HOM05D002009 ORTHO05D005728 2.6e-07 59.7 145 27.6
CsaV3_6G041210 Cucumis sativus L. HOM05D002009 ORTHO05D005728 2.6e-07 59.7 103 33.0
Lsat_1_v5_gn_5_68921 Lactuca sativa HOM05D002009 ORTHO05D005728 2.6e-07 59.7 103 32.0
TPR.G28192 Trifolium pratense HOM05D002009 ORTHO05D005728 2.6e-07 59.7 103 31.1
Actinidia06606 Actinidia chinensis HOM05D002009 ORTHO05D005728 3.4e-07 59.3 103 33.0
Lj2C610T1 Lonicera japonica HOM05D002009 ORTHO05D005728 3.4e-07 59.3 103 31.1
SHI11495 Sapria himalayana HOM05D002009 ORTHO05D005728 3.4e-07 59.3 145 27.6
Thecc.07G044100 Theobroma cacao HOM05D002009 ORTHO05D005728 3.4e-07 59.3 103 31.1
TWI31G0245 Tripterygium wilfordii HOM05D002009 ORTHO05D005728 3.4e-07 59.3 103 31.1
CSS0020069 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D005728 4.4e-07 58.9 105 31.4
Dinv34360 Davidia involucrata HOM05D002009 ORTHO05D005728 4.4e-07 58.9 103 32.0
Gohir.A13G139100 Gossypium hirsutum HOM05D002009 ORTHO05D005728 4.4e-07 58.9 103 31.1
Gohir.D13G143900 Gossypium hirsutum HOM05D002009 ORTHO05D005728 4.4e-07 58.9 103 31.1
Gorai.013G160900 Gossypium raimondii HOM05D002009 ORTHO05D005728 4.4e-07 58.9 103 31.1
Nn5g28479 Nelumbo nucifera HOM05D002009 ORTHO05D005728 4.4e-07 58.9 103 31.1
Rhsim10G0131800 Rhododendron simsii HOM05D002009 ORTHO05D005728 4.4e-07 58.9 105 32.4
TAR376G0128 Trochodendron aralioides HOM05D002009 ORTHO05D005728 4.4e-07 58.9 103 31.1
Ah.06g190900 Amaranthus hybridus HOM05D002009 ORTHO05D005728 5.7e-07 58.5 103 32.0
EL10Ac4g09604 Beta vulgaris HOM05D002009 ORTHO05D005728 5.7e-07 58.5 103 31.1
Migut.E01506 Erythranthe guttata HOM05D002009 ORTHO05D005728 5.7e-07 58.5 162 25.3
Medtr3g096525 Medicago truncatula HOM05D002009 ORTHO05D005728 5.7e-07 58.5 103 31.1
Zm00001eb201340 Zea mays HOM05D002009 ORTHO05D005728 5.7e-07 58.5 103 30.1
Psat5g060760 Pisum sativum HOM05D002009 ORTHO05D005728 7.5e-07 58.2 103 31.1
Potri.005G065800 Populus trichocarpa HOM05D002009 ORTHO05D005728 7.5e-07 58.2 103 32.0
Sabra05G0054400 Salix brachista HOM05D002009 ORTHO05D005728 7.5e-07 58.2 103 31.1
CANSAT01G2904 Cannabis sativa HOM05D002009 ORTHO05D005728 9.8e-07 57.8 103 30.1
ClCG01G015100 Citrullus lanatus HOM05D002009 ORTHO05D005728 9.8e-07 57.8 145 27.6
Lj6g0003801 Lotus japonicus HOM05D002009 ORTHO05D005728 9.8e-07 57.8 103 32.0
MD00G1053300 Malus domestica HOM05D002009 ORTHO05D005728 9.8e-07 57.8 103 31.1
Sc16g0009480 Simmondsia chinensis HOM05D002009 ORTHO05D005728 9.8e-07 57.8 103 31.1
GSVIVG01026455001 Vitis vinifera HOM05D002009 ORTHO05D005728 9.8e-07 57.8 103 31.1
Phvul.005G019000 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 1.3e-06 57.4 103 32.0
MSTRG.23471 Avicennia marina HOM05D002009 ORTHO05D005728 1.7e-06 57.0 103 31.1
Cre01.g015250 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D005728 1.7e-06 57.0 146 29.5
Migut.H00864 Erythranthe guttata HOM05D002009 ORTHO05D005728 1.7e-06 57.0 103 30.1
RcHm_v2.0_Chr2g0122111 Rosa chinensis HOM05D002009 ORTHO05D005728 1.7e-06 57.0 165 27.9
COL.COLO4_09630 Corchorus olitorius HOM05D002009 ORTHO05D005728 2.2e-06 56.6 103 31.1
MCO05G447 Micromonas commoda HOM05D002009 ORTHO05D005728 2.2e-06 56.6 103 31.1
Cfa002919 Carpinus fangiana HOM05D002009 ORTHO05D005728 2.8e-06 56.2 103 31.1
CiPaw.03G119300 Carya illinoinensis HOM05D002009 ORTHO05D005728 2.8e-06 56.2 103 30.1
Ciclev10000086m.g Citrus clementina HOM05D002009 ORTHO05D005728 2.8e-06 56.2 103 31.1
Cc07_g18900 Coffea canephora HOM05D002009 ORTHO05D005728 2.8e-06 56.2 103 30.1
Haze_25289 Corylus avellana HOM05D002009 ORTHO05D005728 2.8e-06 56.2 103 30.1
Aqoxy5G02298 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 3.7e-06 55.8 106 32.1
AUR62006845 Chenopodium quinoa HOM05D002009 ORTHO05D005728 3.7e-06 55.8 103 30.1
Aa31LG1G17940 Aethionema arabicum HOM05D002009 ORTHO05D005728 4.9e-06 55.5 103 31.1
Lj1g0002975 Lotus japonicus HOM05D002009 ORTHO05D005728 6.3e-06 55.1 103 30.1
AagrBONN_evm.TU.Sc2ySwM_344.4377 Anthoceros agrestis HOM05D002009 ORTHO05D005728 8.3e-06 54.7 104 27.9
SMO232G0005 Selaginella moellendorffii HOM05D002009 ORTHO05D005728 8.3e-06 54.7 103 29.1


User provided reference genes

Program Settings