Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 4.3e-161 571.2 286 100.0
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 1.0e-40 171.4 219 42.5
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 5.0e-40 169.1 246 40.2
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.6e-38 164.1 247 37.7
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 2.1e-38 163.7 202 41.6
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 2.7e-38 163.3 267 36.3
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 4.7e-38 162.5 305 34.4
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 6.1e-38 162.2 284 34.2
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 6.1e-38 162.2 285 35.1
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 1.0e-37 161.4 261 35.6
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.0e-37 161.4 295 34.2
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 1.4e-37 161.0 223 39.0
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.8e-37 160.6 207 39.1
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.8e-37 160.6 262 35.1
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.8e-37 160.6 281 34.2
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.3e-37 160.2 293 33.4
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 3.0e-37 159.8 251 36.7
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 6.7e-37 158.7 280 34.6
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.1e-36 157.9 233 37.8
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-36 157.5 266 34.6
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 3.3e-36 156.4 274 34.7
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 7.4e-36 155.2 256 36.3
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 7.4e-36 155.2 301 33.2
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.3e-35 154.5 330 30.3
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.3e-35 154.5 271 35.1
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.3e-35 154.5 256 35.2
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.7e-35 154.1 291 33.3
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 2.2e-35 153.7 250 36.4
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 2.8e-35 153.3 268 34.3
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 3.7e-35 152.9 256 34.8
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 4.8e-35 152.5 306 33.3
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 6.3e-35 152.1 234 34.6
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 6.3e-35 152.1 266 33.8
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 8.2e-35 151.8 245 36.7
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 8.2e-35 151.8 289 31.8
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.1e-34 151.4 306 34.0
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.4e-34 151.0 255 33.7
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.4e-34 151.0 250 34.0
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 2.4e-34 150.2 252 33.7
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 2.4e-34 150.2 255 34.1
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 2.4e-34 150.2 233 37.8
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 3.1e-34 149.8 232 36.2
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 3.1e-34 149.8 275 33.5
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 3.1e-34 149.8 252 34.9
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 4.1e-34 149.4 260 34.6
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 5.3e-34 149.1 310 31.3
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 7.0e-34 148.7 310 30.6
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 7.0e-34 148.7 260 34.2
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 9.1e-34 148.3 253 35.2
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 9.1e-34 148.3 257 34.2
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.2e-33 147.9 257 34.2
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 2.0e-33 147.1 280 33.2
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 2.0e-33 147.1 329 29.5
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 2.6e-33 146.7 253 34.4
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.5e-33 146.4 299 31.4
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 3.5e-33 146.4 299 31.4
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 7.7e-33 145.2 254 34.3
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 7.7e-33 145.2 246 34.1
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 1.0e-32 144.8 268 31.3
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.3e-32 144.4 262 34.0
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.7e-32 144.1 245 34.3
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.9e-32 143.3 255 34.9
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 3.8e-32 142.9 268 33.2
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 6.5e-32 142.1 275 32.4
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.5e-32 142.1 257 33.5
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 6.5e-32 142.1 261 32.2
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.1e-31 141.4 265 32.1
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.1e-31 141.4 286 33.2
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.5e-31 140.2 252 33.3
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 2.5e-31 140.2 294 31.0
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 3.2e-31 139.8 233 33.0
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 5.5e-31 139.0 272 33.1
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 5.5e-31 139.0 336 30.7
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 7.2e-31 138.7 258 33.3
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.2e-30 137.9 221 34.8
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.2e-30 137.9 255 33.7
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.2e-30 137.9 198 38.9
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.2e-30 137.9 285 31.2
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.6e-30 137.5 260 31.9
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 2.7e-30 136.7 253 31.6
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 4.7e-30 136.0 254 32.7
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 6.1e-30 135.6 278 30.6
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 1.0e-29 134.8 245 34.3
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 4.0e-29 132.9 301 30.6
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 5.2e-29 132.5 340 30.0
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.2e-28 131.3 132 50.8
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 1.2e-28 131.3 261 32.2
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.2e-28 131.3 253 32.4
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 4.4e-28 129.4 363 27.8
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.7e-28 129.0 236 33.5
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 9.7e-28 128.3 259 32.8
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 9.7e-28 128.3 150 44.7
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 1.3e-27 127.9 342 27.5
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.7e-27 127.5 236 33.1
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.2e-27 127.1 189 38.1
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 4.8e-27 125.9 246 31.7
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.1e-26 122.9 133 45.9
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 5.3e-26 122.5 215 34.0
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.1e-26 121.7 190 36.3
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 9.1e-26 121.7 308 27.9
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 2.7e-25 120.2 261 30.7
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 8.5e-24 115.2 122 45.1
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 8.0e-22 108.6 120 46.7
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 8.0e-22 108.6 251 30.7
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 2.3e-21 107.1 206 32.0
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 3.0e-21 106.7 120 45.0
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.8e-21 105.5 161 37.9
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 3.4e-20 103.2 121 42.1
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 4.4e-20 102.8 130 40.8
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 5.7e-20 102.4 123 42.3
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.3e-19 101.3 123 41.5
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 3.7e-19 99.8 202 30.7
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 8.3e-19 98.6 122 41.0
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.1e-18 98.2 178 33.1
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 4.1e-18 96.3 122 40.2
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 4.1e-18 96.3 164 36.0
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.7e-17 93.6 80 53.8
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 7.7e-17 92.0 83 48.2
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.3e-16 91.3 82 51.2
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 2.9e-16 90.1 80 55.0
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 3.8e-16 89.7 122 38.5
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.1e-15 88.2 133 36.8
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.1e-15 88.2 119 39.5
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 5.5e-15 85.9 78 51.3
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 5.5e-15 85.9 139 34.5
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.7e-14 82.8 101 41.6
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.0e-13 81.6 114 36.8
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.0e-13 81.6 114 36.8
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 1.0e-13 81.6 114 36.8
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.0e-13 81.6 94 42.6
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 8.8e-13 78.6 73 49.3
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 5.4e-10 69.3 82 46.3
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.3e-08 64.7 112 33.9
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.3e-08 64.7 60 48.3
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.9e-07 60.8 58 51.7
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 6.1e-06 55.8 60 46.7
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 8.0e-06 55.5 60 46.7


User provided reference genes

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