Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 1.2e-153 546.6 289 100.0
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 3.0e-77 292.7 218 69.3
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 1.5e-68 263.8 259 56.8
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 3.3e-68 262.7 258 56.2
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 6.3e-67 258.5 259 56.4
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 8.2e-67 258.1 217 61.8
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 1.1e-66 257.7 221 60.2
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 9.1e-66 254.6 233 58.8
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 3.5e-65 252.7 291 50.9
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 4.5e-65 252.3 237 57.0
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.0e-64 251.1 283 50.9
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 3.8e-64 249.2 215 60.5
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.1e-63 247.7 215 60.9
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 2.5e-63 246.5 216 57.9
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 2.5e-63 246.5 252 52.4
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 3.2e-63 246.1 262 53.8
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 3.2e-63 246.1 215 60.5
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 4.2e-63 245.7 270 50.0
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 4.2e-63 245.7 254 53.9
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 4.2e-63 245.7 279 49.1
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 4.7e-62 242.3 299 48.8
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 6.1e-62 241.9 277 51.6
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 8.0e-62 241.5 227 57.7
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 4.0e-61 239.2 258 53.1
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 2.0e-60 236.9 241 54.8
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 2.0e-60 236.9 260 51.5
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 5.7e-60 235.3 282 51.1
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 9.7e-60 234.6 248 50.8
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 9.7e-60 234.6 215 55.8
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 1.3e-59 234.2 214 54.2
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 6.3e-59 231.9 221 57.9
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 1.1e-58 231.1 244 52.9
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 1.4e-58 230.7 272 49.3
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 1.4e-58 230.7 232 53.0
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 2.4e-58 229.9 209 57.9
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 2.4e-58 229.9 268 48.9
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 3.1e-58 229.6 288 47.9
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 4.1e-58 229.2 255 51.8
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 7.0e-58 228.4 216 56.5
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 7.0e-58 228.4 248 49.2
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 7.0e-58 228.4 236 52.5
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 9.1e-58 228.0 236 53.0
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 9.1e-58 228.0 276 49.6
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 3.5e-57 226.1 203 60.1
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 4.5e-57 225.7 221 52.0
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 4.5e-57 225.7 184 62.0
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 5.9e-57 225.3 221 53.4
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 5.9e-57 225.3 254 49.6
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.0e-56 224.6 215 56.3
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 1.0e-56 224.6 217 55.8
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 1.3e-56 224.2 231 53.2
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 1.3e-56 224.2 215 54.0
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 1.3e-56 224.2 215 54.0
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 1.3e-56 224.2 214 56.5
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 1.7e-56 223.8 255 47.8
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.7e-56 223.8 260 50.0
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.7e-56 223.8 260 50.0
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 2.2e-56 223.4 239 52.7
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 2.9e-56 223.0 280 47.1
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 2.9e-56 223.0 159 68.6
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 3.8e-56 222.6 254 50.8
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 5.0e-56 222.2 276 46.7
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 6.5e-56 221.9 260 48.8
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 1.1e-55 221.1 216 52.3
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 1.5e-55 220.7 218 51.8
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 1.5e-55 220.7 218 53.2
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 3.2e-55 219.5 259 47.9
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 7.2e-55 218.4 233 51.5
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 9.4e-55 218.0 212 53.3
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 9.4e-55 218.0 212 53.3
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 9.4e-55 218.0 221 51.1
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 1.2e-54 217.6 212 53.3
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 1.2e-54 217.6 221 55.2
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 1.6e-54 217.2 257 47.5
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 2.1e-54 216.9 282 46.1
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 2.1e-54 216.9 215 53.5
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 2.1e-54 216.9 234 50.4
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 2.1e-54 216.9 216 53.2
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 2.7e-54 216.5 232 53.0
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 4.7e-54 215.7 216 51.9
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 4.7e-54 215.7 233 48.5
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.0e-53 214.5 244 48.0
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.4e-53 214.2 219 54.8
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 3.0e-53 213.0 252 49.6
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 3.0e-53 213.0 219 54.8
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 3.0e-53 213.0 219 54.8
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 6.8e-53 211.8 216 52.3
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.2e-52 211.1 244 46.7
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 1.5e-52 210.7 233 50.2
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.0e-52 210.3 258 46.1
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 3.4e-52 209.5 219 54.3
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.4e-52 209.5 278 46.0
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 4.4e-52 209.1 204 54.4
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 7.5e-52 208.4 266 46.2
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 2.2e-51 206.8 260 45.8
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.2e-51 206.8 256 45.7
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 6.3e-51 205.3 286 43.4
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 1.1e-50 204.5 260 46.5
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 1.4e-50 204.1 236 47.9
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 1.8e-50 203.8 252 47.2
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 3.1e-50 203.0 258 46.1
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 2.0e-49 200.3 221 46.2
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 2.7e-49 199.9 203 51.2
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 3.5e-49 199.5 163 58.9
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.5e-49 199.5 273 46.2
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 4.5e-49 199.1 170 60.0
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 4.5e-49 199.1 219 46.6
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 7.7e-49 198.4 216 49.1
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 2.9e-48 196.4 252 46.4
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 8.6e-48 194.9 154 61.0
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 1.1e-47 194.5 204 52.9
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 2.1e-46 190.3 177 56.5
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 8.0e-46 188.3 220 52.7
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.0e-45 188.0 202 50.0
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 5.7e-44 182.2 197 50.3
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 1.2e-41 174.5 175 53.1
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 2.0e-41 173.7 244 43.0
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 3.5e-41 172.9 216 46.8
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 5.9e-41 172.2 177 54.8
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 1.3e-40 171.0 267 40.8
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.6e-38 164.1 178 51.1
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 4.4e-36 156.0 119 63.0
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 1.9e-31 140.6 178 44.9
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 3.5e-25 119.8 84 65.5
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 4.3e-23 112.8 113 53.1
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 7.3e-23 112.1 132 47.7
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 9.5e-23 111.7 137 43.8
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.4e-21 107.8 132 45.5
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 3.4e-20 103.2 191 36.6
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 4.9e-19 99.4 134 43.3
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 2.7e-17 93.6 139 41.7
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 8.1e-14 82.0 162 39.5
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 3.5e-09 66.6 100 47.0
SMO235G0038 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 1.9e-07 60.8 99 40.4


User provided reference genes

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