Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 2.2e-115 419.1 225 100.0
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.3e-80 303.5 227 70.9
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 4.0e-77 292.0 228 68.0
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 2.6e-68 262.7 227 61.2
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.4e-66 256.1 219 62.6
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.6e-65 253.4 229 58.5
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 2.7e-65 252.7 191 69.1
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.7e-65 252.7 198 66.2
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.7e-65 252.7 232 58.2
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 3.5e-65 252.3 231 59.7
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 4.6e-65 251.9 227 59.9
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.0e-64 250.8 225 60.9
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.0e-64 250.8 196 67.3
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.3e-64 250.4 232 59.1
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 2.3e-64 249.6 191 68.1
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 2.3e-64 249.6 225 59.6
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.0e-64 249.2 233 58.4
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 3.0e-64 249.2 192 68.2
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 3.0e-64 249.2 228 60.1
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 3.0e-64 249.2 228 60.1
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 3.9e-64 248.8 228 59.2
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 6.6e-64 248.1 197 65.0
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 8.7e-64 247.7 192 67.2
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 8.7e-64 247.7 226 60.2
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 8.7e-64 247.7 191 68.1
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.1e-63 247.3 228 58.8
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.1e-63 247.3 226 60.2
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.1e-63 247.3 192 67.2
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.1e-63 247.3 228 58.8
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.1e-63 247.3 198 65.7
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.5e-63 246.9 226 60.2
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.9e-63 246.5 195 66.7
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.9e-63 246.5 225 59.1
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.5e-63 246.1 226 59.7
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 3.3e-63 245.7 198 64.1
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.3e-63 245.7 226 59.3
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 3.3e-63 245.7 201 62.2
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 4.3e-63 245.4 191 67.0
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 4.3e-63 245.4 191 66.5
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 4.3e-63 245.4 228 56.6
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 4.3e-63 245.4 198 64.1
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 4.3e-63 245.4 196 64.3
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 5.6e-63 245.0 225 57.8
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 7.3e-63 244.6 193 66.8
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 9.6e-63 244.2 195 65.1
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 9.6e-63 244.2 198 64.6
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 9.6e-63 244.2 192 66.1
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 9.6e-63 244.2 223 58.3
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.3e-62 243.8 198 63.6
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.6e-62 243.4 191 66.5
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.6e-62 243.4 223 58.3
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.1e-62 243.0 191 67.0
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 2.8e-62 242.7 223 57.8
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 2.8e-62 242.7 191 66.0
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 3.6e-62 242.3 198 63.6
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 4.8e-62 241.9 194 65.5
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 6.2e-62 241.5 191 66.5
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 8.1e-62 241.1 228 57.0
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 8.1e-62 241.1 195 63.6
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.1e-61 240.7 229 56.8
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.1e-61 240.7 228 56.1
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.1e-61 240.7 196 63.3
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.4e-61 240.4 198 64.1
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.4e-61 239.6 225 58.7
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.4e-61 239.6 225 58.7
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 2.4e-61 239.6 194 63.9
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.4e-61 239.6 228 56.1
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 3.1e-61 239.2 222 56.8
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 4.0e-61 238.8 222 56.8
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 4.0e-61 238.8 195 63.1
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 4.0e-61 238.8 192 62.5
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 5.3e-61 238.4 221 57.9
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 5.3e-61 238.4 221 57.9
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 5.3e-61 238.4 192 63.5
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 5.3e-61 238.4 192 63.0
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 5.3e-61 238.4 196 62.8
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 5.3e-61 238.4 192 64.6
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 6.9e-61 238.0 191 64.9
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.2e-60 237.3 193 64.2
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.5e-60 236.9 191 63.9
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.5e-60 236.9 192 62.0
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.0e-60 236.5 222 56.8
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 2.0e-60 236.5 192 63.5
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.0e-60 236.5 192 62.5
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 2.6e-60 236.1 192 64.1
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 4.4e-60 235.3 191 62.3
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 4.4e-60 235.3 192 64.1
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.4e-60 235.3 197 63.5
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 4.4e-60 235.3 191 63.9
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 5.8e-60 235.0 221 57.5
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 5.8e-60 235.0 221 57.5
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 7.6e-60 234.6 191 62.3
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 9.9e-60 234.2 189 65.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.3e-59 233.8 193 62.2
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.3e-59 233.8 191 62.3
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.3e-59 233.8 197 62.9
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.3e-59 233.8 192 63.0
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.3e-59 233.8 190 64.7
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.3e-59 233.8 194 62.4
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.7e-59 233.4 195 64.1
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.7e-59 233.4 191 63.9
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 2.9e-59 232.6 185 66.5
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 2.9e-59 232.6 195 62.6
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.9e-59 231.9 229 57.2
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 4.9e-59 231.9 193 62.2
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 6.4e-59 231.5 193 63.7
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 6.4e-59 231.5 193 63.7
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 8.4e-59 231.1 222 55.0
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 8.4e-59 231.1 197 61.4
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.1e-58 230.7 194 62.4
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.1e-58 230.7 192 63.5
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.4e-58 230.3 193 63.2
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.4e-58 230.3 191 63.9
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.9e-58 229.9 191 62.8
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.9e-58 229.9 229 56.8
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 3.2e-58 229.2 185 65.4
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 9.3e-58 227.6 228 55.7
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.2e-57 227.3 178 66.3
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.7e-57 226.1 182 65.9
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.0e-56 224.2 194 59.3
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.0e-56 224.2 230 53.5
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 3.9e-56 222.2 182 63.2
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.9e-55 219.9 177 65.5
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 9.6e-55 217.6 192 59.9
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 6.9e-53 211.5 191 62.3
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 9.3e-50 201.1 169 61.5
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.7e-43 180.3 142 66.9
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 6.0e-41 171.8 199 48.2
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.1e-39 167.5 144 62.5
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 4.8e-38 162.2 167 55.1
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 5.9e-36 155.2 197 46.7
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.0e-35 154.5 202 44.6
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.2e-30 136.7 119 61.3
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 1.2e-28 131.0 95 67.4
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 9.4e-26 121.3 188 38.3
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.8e-24 117.1 91 61.5
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 8.8e-24 114.8 170 42.9
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 7.7e-20 101.7 86 59.3
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 8.5e-19 98.2 187 33.2
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.6e-17 94.0 98 50.0
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 5.3e-13 79.0 213 30.0
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.0e-11 74.7 59 59.3
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 8.5e-11 71.6 86 45.3
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 8.8e-08 61.6 42 71.4


User provided reference genes

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