Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 0.0e+00 1132.5 571 100.0
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 4.4e-88 329.7 335 51.9
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 3.3e-75 287.0 330 47.6
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 7.3e-75 285.8 330 46.1
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 3.6e-74 283.5 331 47.7
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 6.2e-74 282.7 331 47.7
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.1e-73 282.0 329 47.7
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.8e-73 281.2 320 47.8
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.8e-73 281.2 331 47.4
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.0e-73 280.0 331 47.4
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 5.2e-73 279.6 330 47.6
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 6.8e-73 279.3 331 47.7
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.2e-72 278.5 331 46.8
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 1.5e-72 278.1 330 46.7
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 2.6e-72 277.3 330 47.0
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 7.5e-72 275.8 330 47.0
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 7.5e-72 275.8 331 46.5
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 7.5e-72 275.8 331 46.8
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 9.8e-72 275.4 327 46.8
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 9.8e-72 275.4 330 46.4
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 1.3e-71 275.0 330 46.1
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 1.7e-71 274.6 330 45.8
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 2.9e-71 273.9 330 46.1
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 2.9e-71 273.9 327 45.9
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 4.9e-71 273.1 330 44.8
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 4.9e-71 273.1 330 46.1
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 4.9e-71 273.1 330 46.1
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 4.9e-71 273.1 330 46.1
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 6.4e-71 272.7 336 45.5
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 8.3e-71 272.3 330 45.8
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 8.3e-71 272.3 330 45.8
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 1.1e-70 271.9 330 44.5
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 1.9e-70 271.2 330 46.4
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 1.9e-70 271.2 330 45.8
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 2.4e-70 270.8 330 44.8
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 3.2e-70 270.4 328 44.5
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 3.2e-70 270.4 336 45.5
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 4.1e-70 270.0 327 46.8
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 2.1e-69 267.7 331 44.1
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 2.7e-69 267.3 331 44.4
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 3.5e-69 266.9 330 44.2
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 3.5e-69 266.9 330 45.2
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 3.5e-69 266.9 327 45.9
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 4.6e-69 266.5 330 44.2
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 6.0e-69 266.2 334 44.6
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 6.0e-69 266.2 331 44.1
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 6.0e-69 266.2 330 44.2
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.0e-68 265.4 331 44.4
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 2.3e-68 264.2 330 45.2
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 2.3e-68 264.2 330 43.0
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 2.3e-68 264.2 330 45.8
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 3.0e-68 263.8 331 42.9
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 3.0e-68 263.8 330 44.8
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 3.9e-68 263.5 330 44.2
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 3.9e-68 263.5 330 43.3
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 5.1e-68 263.1 328 45.1
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 5.1e-68 263.1 328 43.0
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 5.1e-68 263.1 330 43.9
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 6.6e-68 262.7 328 43.3
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 8.6e-68 262.3 328 43.6
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 1.1e-67 261.9 330 45.8
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 1.1e-67 261.9 331 44.1
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 1.5e-67 261.5 328 43.6
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 1.9e-67 261.2 280 49.3
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 2.5e-67 260.8 330 43.0
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 3.3e-67 260.4 330 42.7
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 4.3e-67 260.0 331 43.5
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 5.6e-67 259.6 330 43.6
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 1.2e-66 258.5 331 42.9
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 2.8e-66 257.3 330 42.1
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 4.7e-66 256.5 330 41.8
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 4.7e-66 256.5 309 46.3
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 6.2e-66 256.1 327 44.3
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 1.1e-65 255.4 330 41.8
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 1.8e-65 254.6 330 42.4
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 6.8e-65 252.7 316 41.8
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 2.0e-64 251.1 351 43.3
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 5.8e-64 249.6 328 43.6
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 1.7e-63 248.1 330 43.9
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.7e-63 248.1 330 43.9
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 3.7e-63 246.9 319 43.3
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 4.9e-63 246.5 330 42.7
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.1e-62 245.4 327 42.8
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 1.1e-62 245.4 388 38.4
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 2.1e-61 241.1 312 43.6
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 7.8e-61 239.2 327 40.1
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 2.3e-60 237.7 312 42.6
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 2.5e-59 234.2 335 40.6
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 3.3e-59 233.8 317 40.4
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 7.3e-59 232.6 330 40.9
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 2.1e-58 231.1 314 40.8
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 2.1e-58 231.1 319 40.4
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 6.2e-58 229.6 330 39.4
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 6.2e-58 229.6 338 39.6
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 6.2e-58 229.6 330 42.1
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 6.8e-57 226.1 317 41.3
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 4.4e-56 223.4 326 41.1
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 7.6e-56 222.6 330 39.4
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 9.9e-56 222.2 314 40.1
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 2.2e-55 221.1 332 41.9
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 5.4e-54 216.5 330 39.7
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.3e-52 211.8 332 39.5
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 7.3e-51 206.1 256 46.5
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 2.8e-50 204.1 344 37.2
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 6.2e-50 203.0 256 44.9
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 5.3e-49 199.9 258 44.6
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 1.2e-48 198.7 258 43.8
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 3.4e-48 197.2 319 37.0
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 7.6e-48 196.1 251 42.6
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 4.9e-47 193.4 247 46.2
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 1.3e-42 178.7 321 34.6
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 2.9e-39 167.5 216 46.8
SEGI_13365 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 3.9e-36 157.1 170 50.0
AT4G00234 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 5.3e-33 146.7 169 49.7
Nitab4.5_0000200g0180 Nicotiana tabacum HOM05D004707 ORTHO05D005837 6.9e-33 146.4 173 46.8
CDE04G1515 Ceratophyllum demersum HOM05D004707 ORTHO05D005837 1.4e-30 138.7 144 47.9
Pp3c9_20120 Physcomitrium patens HOM05D004707 ORTHO05D005837 3.0e-28 131.0 150 44.7
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 1.1e-25 122.5 222 33.3
SMO361G0110 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 3.2e-22 110.9 292 28.1
Mapoly0003s0092 Marchantia polymorpha HOM05D004707 ORTHO05D005837 1.6e-18 98.6 278 26.6
Pp3c3_12760 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.8e-18 97.8 281 26.3
SMO361G0690 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 4.8e-18 97.1 282 28.4
AagrBONN_evm.TU.Sc2ySwM_368.2343 Anthoceros agrestis HOM05D004707 ORTHO05D005837 8.2e-18 96.3 289 28.4
Pp3c13_20730 Physcomitrium patens HOM05D004707 ORTHO05D005837 6.9e-17 93.2 280 26.8
MBI09_g26550_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 6.5e-15 86.7 90 50.0
Lsat_1_v5_gn_4_48081 Lactuca sativa HOM05D004707 ORTHO05D005837 3.2e-14 84.3 157 31.8
SEGI_38275 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 3.3e-11 74.3 74 51.4
SEGI_23190 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 1.7e-10 72.0 83 32.5
TAR626G0135 Trochodendron aralioides HOM05D004707 ORTHO05D005837 6.3e-10 70.1 61 62.3
HanXRQChr09g0268301 Helianthus annuus HOM05D004707 ORTHO05D005837 2.4e-09 68.2 85 38.8
HanXRQChr11g0349701 Helianthus annuus HOM05D004707 ORTHO05D005837 2.4e-09 68.2 85 38.8
HanXRQChr17g0534491 Helianthus annuus HOM05D004707 ORTHO05D005837 2.4e-09 68.2 85 38.8
Lsat_1_v5_gn_4_48041 Lactuca sativa HOM05D004707 ORTHO05D005837 2.4e-09 68.2 187 27.3
Rhsim05G0008500 Rhododendron simsii HOM05D004707 ORTHO05D005837 4.1e-09 67.4 224 27.7
Rhsim05G0021600 Rhododendron simsii HOM05D004707 ORTHO05D005837 4.1e-09 67.4 224 28.1
Migut.B01027 Erythranthe guttata HOM05D004707 ORTHO05D005837 2.9e-07 61.2 158 28.5
Hma1.2p1_0071F.1_g037910 Hydrangea macrophylla HOM05D004707 ORTHO05D005837 3.8e-07 60.8 70 34.3
MCO12G417 Micromonas commoda HOM05D004707 ORTHO05D005837 5.0e-07 60.5 223 25.1
Migut.B01028 Erythranthe guttata HOM05D004707 ORTHO05D005837 4.2e-06 57.4 120 29.2


User provided reference genes

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