Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 2420.2 1211 100.0
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1449.9 1217 59.3
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1318.9 1211 55.6
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1260.0 1202 52.8
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1250.7 1174 53.1
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1248.8 1208 52.5
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1248.4 1211 52.4
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1245.0 1187 53.2
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1242.3 1209 52.3
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1240.7 1198 52.5
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1235.3 1206 51.7
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1234.2 1188 52.5
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1232.2 1184 52.4
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1231.9 1188 51.6
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1229.5 1188 51.6
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1223.8 1203 51.5
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1220.3 1200 50.8
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1219.9 1184 51.6
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1219.5 1202 50.8
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1218.0 1202 50.7
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1215.3 1199 51.3
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1214.5 1202 50.7
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1214.1 1211 51.0
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1213.7 1206 51.5
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1211.4 1203 50.8
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1211.1 1206 51.4
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1211.1 1196 51.6
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1206.4 1197 51.8
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1206.4 1202 51.2
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1200.3 1198 50.8
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1199.5 1186 51.6
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1199.5 1205 50.4
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1199.1 1203 51.5
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1194.9 1202 50.7
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1191.8 1207 49.7
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1191.4 1244 49.0
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1191.0 1206 50.5
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1188.7 1190 50.3
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1185.2 1189 50.3
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1184.9 1209 50.5
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1182.9 1199 50.1
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1179.9 1208 49.4
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1179.1 1190 50.3
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1178.7 1177 50.8
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1177.5 1212 50.0
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1176.4 1202 50.3
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1176.0 1197 51.0
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1174.8 1206 49.8
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1174.1 1190 50.8
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1172.9 1205 50.7
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1172.5 1208 49.7
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1171.4 1152 50.4
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1169.5 1211 49.8
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1169.1 1195 50.6
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1168.3 1211 49.8
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1168.3 1195 50.5
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1166.4 1189 50.4
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1166.4 1200 49.3
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1165.6 1211 49.5
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1165.6 1217 49.5
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1165.6 1200 49.1
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1165.2 1190 50.0
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1164.4 1214 49.2
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1163.3 1205 49.2
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1161.4 1223 49.1
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1160.2 1191 49.7
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1160.2 1201 49.5
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1159.4 1205 48.6
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1158.7 1247 48.7
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1158.3 1205 49.3
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1157.5 1205 49.5
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1155.2 1203 49.1
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1154.0 1173 50.6
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1152.9 1205 49.1
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1152.1 1215 49.0
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1152.1 1144 50.5
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1151.0 1211 49.0
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1151.0 1206 48.6
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1147.5 1235 48.4
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1147.5 1198 50.1
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1144.0 1225 48.6
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1140.2 1210 49.2
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1138.3 1205 48.0
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1137.9 1164 50.1
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1136.7 1201 48.0
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1136.3 1273 47.1
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1133.2 1187 49.7
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1128.6 1187 48.5
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1128.2 1254 47.4
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1128.2 1209 48.1
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1122.5 1311 45.3
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1107.0 1189 47.1
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1105.5 1189 48.4
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1103.6 1211 47.9
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1096.3 1246 46.4
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1079.3 1028 52.2
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.5e-300 1036.6 1012 50.9
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 1.5e-300 1036.6 1268 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 1.8e-288 996.5 1061 49.7
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 3.6e-281 972.2 976 50.6
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 5.0e-275 951.8 995 49.5
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 2.3e-267 926.4 1188 44.0
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 3.8e-267 925.6 1204 43.6
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 1.7e-251 873.6 1226 41.7
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 3.1e-248 862.8 1100 43.2
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 1.6e-244 850.5 1232 40.9
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.7e-238 830.5 838 49.2
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 1.2e-236 824.3 1207 39.3
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 5.3e-216 755.7 802 48.5
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.9e-205 720.7 860 45.1
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.8e-185 653.7 719 48.0
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 7.9e-180 635.6 719 45.8
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 1.3e-174 618.2 592 52.5
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 2.3e-158 564.3 488 56.8
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 5.6e-149 533.1 825 38.7
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 4.7e-148 530.0 475 55.4
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 2.0e-146 524.6 550 50.0
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 3.6e-140 503.8 716 40.6
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 8.6e-126 456.1 756 38.0
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 3.6e-108 397.5 412 50.0
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.6e-103 382.1 435 45.7
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 3.0e-78 298.1 595 34.8
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 3.8e-73 281.2 261 51.7
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 9.8e-45 186.8 167 53.3
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.3e-44 186.4 377 30.8
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 3.4e-37 161.8 316 31.6
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 4.1e-35 154.8 178 45.5
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 5.9e-34 151.0 320 30.0
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 5.0e-33 147.9 146 52.1
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 6.6e-33 147.5 192 44.8
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 8.0e-23 114.0 141 41.8
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 2.1e-18 99.4 134 43.3
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 3.0e-17 95.5 150 40.7
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 2.8e-15 89.0 72 54.2
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 4.7e-15 88.2 129 38.0
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 8.3e-12 77.4 81 50.6
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 1.9e-08 66.2 89 42.7
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 5.2e-06 58.2 197 26.4


User provided reference genes

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