Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_10900 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.5e-86 322.8 159 100.0
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.1e-52 210.3 144 70.8
Pp3c2_7150 Physcomitrium patens HOM05D004419 ORTHO05D005480 6.0e-43 177.9 146 62.3
Pp3c1_28300 Physcomitrium patens HOM05D004419 ORTHO05D005480 4.3e-41 171.8 134 63.4
CDE05G0158 Ceratophyllum demersum HOM05D004419 ORTHO05D005480 4.4e-22 108.6 136 44.9
SEGI_22299 Sequoiadendron giganteum HOM05D004419 ORTHO05D005480 1.3e-21 107.1 97 52.6
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 1.3e-21 107.1 108 48.1
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 2.4e-20 102.8 108 47.2
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 2.4e-20 102.8 108 47.2
Gorai.010G128800 Gossypium raimondii HOM05D004419 ORTHO05D005480 2.4e-20 102.8 108 47.2
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 3.2e-20 102.4 120 44.2
MBI01_g05106_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 3.2e-20 102.4 100 51.0
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 4.2e-20 102.1 131 42.0
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 5.4e-20 101.7 105 47.6
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 5.4e-20 101.7 105 48.6
FAN16G1269 Fragaria x ananassa HOM05D004419 ORTHO05D005480 7.1e-20 101.3 114 43.0
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 9.3e-20 100.9 109 45.9
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 1.2e-19 100.5 100 50.0
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 1.6e-19 100.1 109 45.9
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 1.6e-19 100.1 100 50.0
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 2.1e-19 99.8 109 45.9
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 2.1e-19 99.8 109 45.9
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 2.1e-19 99.8 149 35.6
FAN25G0488 Fragaria x ananassa HOM05D004419 ORTHO05D005480 2.7e-19 99.4 113 41.6
Duzib150G1622 Durio zibethinus HOM05D004419 ORTHO05D005480 3.5e-19 99.0 108 47.2
Manes.06G168600 Manihot esculenta HOM05D004419 ORTHO05D005480 3.5e-19 99.0 140 39.3
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 4.6e-19 98.6 109 45.9
QL01p006124 Quercus lobata HOM05D004419 ORTHO05D005480 6.0e-19 98.2 112 43.8
FAN21G0217 Fragaria x ananassa HOM05D004419 ORTHO05D005480 7.8e-19 97.8 111 42.3
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 7.8e-19 97.8 107 47.7
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 1.0e-18 97.4 129 40.3
FAN11G1953 Fragaria x ananassa HOM05D004419 ORTHO05D005480 1.0e-18 97.4 100 46.0
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 1.3e-18 97.1 99 46.5
CiPaw.13G165000 Carya illinoinensis HOM05D004419 ORTHO05D005480 1.3e-18 97.1 107 44.9
FvH4_3g43600 Fragaria vesca HOM05D004419 ORTHO05D005480 1.3e-18 97.1 114 42.1
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 1.3e-18 97.1 118 44.1
Sc16g0011690 Simmondsia chinensis HOM05D004419 ORTHO05D005480 1.3e-18 97.1 120 42.5
ClCG03G013430 Citrullus lanatus HOM05D004419 ORTHO05D005480 2.3e-18 96.3 130 41.5
Glyma.11G130600 Glycine max HOM05D004419 ORTHO05D005480 2.3e-18 96.3 105 47.6
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 3.0e-18 95.9 103 46.6
arahy.Tifrunner.gnm1.ann1.6DX332 Arachis hypogaea HOM05D004419 ORTHO05D005480 3.9e-18 95.5 132 40.2
arahy.Tifrunner.gnm1.ann1.LD2WL8 Arachis hypogaea HOM05D004419 ORTHO05D005480 3.9e-18 95.5 132 40.2
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 3.9e-18 95.5 102 46.1
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 3.9e-18 95.5 115 44.3
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 5.1e-18 95.1 107 46.7
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 5.1e-18 95.1 119 42.9
Phvul.011G056900 Phaseolus vulgaris HOM05D004419 ORTHO05D005480 5.1e-18 95.1 102 47.1
Medtr4g066020 Medicago truncatula HOM05D004419 ORTHO05D005480 1.1e-17 94.0 102 46.1
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 1.1e-17 94.0 113 42.5
RcHm_v2.0_Chr5g0078171 Rosa chinensis HOM05D004419 ORTHO05D005480 1.1e-17 94.0 96 45.8
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 1.1e-17 94.0 114 43.0
VMungo1127G0574 Vigna mungo HOM05D004419 ORTHO05D005480 1.1e-17 94.0 102 47.1
MSTRG.21407 Avicennia marina HOM05D004419 ORTHO05D005480 1.5e-17 93.6 102 46.1
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 1.5e-17 93.6 105 44.8
Psat7g213880 Pisum sativum HOM05D004419 ORTHO05D005480 1.5e-17 93.6 105 44.8
PGR119G1205 Punica granatum HOM05D004419 ORTHO05D005480 1.5e-17 93.6 110 41.8
SGA_v2.0_scaffold1G00802 Striga asiatica HOM05D004419 ORTHO05D005480 1.5e-17 93.6 117 41.0
CAN.G388.54 Capsicum annuum HOM05D004419 ORTHO05D005480 1.9e-17 93.2 96 46.9
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 1.9e-17 93.2 141 39.0
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 2.5e-17 92.8 123 45.5
Manes.14G013900 Manihot esculenta HOM05D004419 ORTHO05D005480 3.3e-17 92.4 140 39.3
Ah.06g193530 Amaranthus hybridus HOM05D004419 ORTHO05D005480 4.3e-17 92.0 96 49.0
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 4.3e-17 92.0 123 46.3
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 4.3e-17 92.0 101 41.6
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 4.3e-17 92.0 95 47.4
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 4.3e-17 92.0 100 49.0
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 5.6e-17 91.7 104 48.1
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 5.6e-17 91.7 104 48.1
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 5.6e-17 91.7 104 48.1
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 5.6e-17 91.7 104 48.1
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 5.6e-17 91.7 104 48.1
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 5.6e-17 91.7 99 46.5
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 7.3e-17 91.3 104 48.1
BcaC05g28278 Brassica carinata HOM05D004419 ORTHO05D005480 7.3e-17 91.3 104 48.1
Peaxi162Scf00559g00213 Petunia axillaris HOM05D004419 ORTHO05D005480 9.6e-17 90.9 110 40.9
AUR62019254 Chenopodium quinoa HOM05D004419 ORTHO05D005480 1.3e-16 90.5 117 41.9
AUR62043680 Chenopodium quinoa HOM05D004419 ORTHO05D005480 1.3e-16 90.5 117 41.9
Potri.001G016200 Populus trichocarpa HOM05D004419 ORTHO05D005480 1.3e-16 90.5 113 40.7
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 1.6e-16 90.1 113 41.6
CARHR096650 Cardamine hirsuta HOM05D004419 ORTHO05D005480 1.6e-16 90.1 145 39.3
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 1.6e-16 90.1 121 44.6
AUR62000082 Chenopodium quinoa HOM05D004419 ORTHO05D005480 2.1e-16 89.7 117 41.9
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 2.8e-16 89.4 96 46.9
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 2.8e-16 89.4 110 41.8
Thhalv10021129m.g Eutrema salsugineum HOM05D004419 ORTHO05D005480 2.8e-16 89.4 157 38.9
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 3.6e-16 89.0 115 40.9
Nitab4.5_0000175g0140 Nicotiana tabacum HOM05D004419 ORTHO05D005480 3.6e-16 89.0 95 43.2
Sabra01G0011400 Salix brachista HOM05D004419 ORTHO05D005480 3.6e-16 89.0 124 37.9
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 4.8e-16 88.6 92 48.9
Lj2C654G2 Lonicera japonica HOM05D004419 ORTHO05D005480 6.2e-16 88.2 78 51.3
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 8.1e-16 87.8 111 45.9
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 8.1e-16 87.8 102 43.1
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 8.1e-16 87.8 96 45.8
Lalb_Chr01g0003291 Lupinus albus HOM05D004419 ORTHO05D005480 8.1e-16 87.8 98 44.9
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 8.1e-16 87.8 110 39.1
Lalb_Chr19g0138231 Lupinus albus HOM05D004419 ORTHO05D005480 1.4e-15 87.0 109 41.3
Nitab4.5_0003250g0020 Nicotiana tabacum HOM05D004419 ORTHO05D005480 1.4e-15 87.0 141 34.8
Solyc01g006680.4 Solanum lycopersicum HOM05D004419 ORTHO05D005480 1.4e-15 87.0 128 39.1
DCAR_002041 Daucus carota HOM05D004419 ORTHO05D005480 1.8e-15 86.7 120 42.5
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 1.8e-15 86.7 96 46.9
HanXRQChr13g0403921 Helianthus annuus HOM05D004419 ORTHO05D005480 4.0e-15 85.5 122 37.7
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 4.0e-15 85.5 128 40.6
Oeu024454.3 Olea europaea HOM05D004419 ORTHO05D005480 4.0e-15 85.5 122 38.5
PGSC0003DMG400021346 Solanum tuberosum HOM05D004419 ORTHO05D005480 6.9e-15 84.7 128 37.5
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 9.0e-15 84.3 95 43.2
Rhsim01G0189600 Rhododendron simsii HOM05D004419 ORTHO05D005480 1.5e-14 83.6 89 44.9
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 5.8e-14 81.6 104 42.3
RcHm_v2.0_Chr5g0078281 Rosa chinensis HOM05D004419 ORTHO05D005480 1.7e-13 80.1 71 46.5
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 9.3e-12 74.3 104 37.5
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 4.8e-08 62.0 70 42.9
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 4.0e-07 58.9 145 35.2
Cre11.g467768 Chlamydomonas reinhardtii HOM05D004419 ORTHO05D005480 2.0e-06 56.6 109 32.1


User provided reference genes

Program Settings