Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 6.5e-165 583.9 285 100.0
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 1.2e-105 387.1 278 66.9
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 1.5e-105 386.7 285 67.0
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 7.5e-97 357.8 241 69.7
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 2.9e-96 355.9 287 61.0
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 1.9e-95 353.2 291 60.1
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 4.1e-95 352.1 286 60.5
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.6e-94 350.1 288 60.1
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 6.0e-94 348.2 296 58.4
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 6.0e-94 348.2 223 71.3
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 1.3e-93 347.1 286 59.8
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 1.7e-93 346.7 248 65.7
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.7e-93 346.7 297 58.9
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 2.3e-93 346.3 288 59.4
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 2.3e-93 346.3 295 58.3
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 5.0e-93 345.1 296 58.4
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 1.1e-92 344.0 296 57.8
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.1e-92 344.0 252 65.1
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 1.1e-92 344.0 252 65.1
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 1.1e-92 344.0 242 66.9
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 1.5e-92 343.6 295 58.0
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 1.5e-92 343.6 248 66.9
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 1.9e-92 343.2 294 58.5
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 1.9e-92 343.2 252 65.1
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 1.9e-92 343.2 292 58.6
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 2.5e-92 342.8 252 65.5
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 2.5e-92 342.8 288 59.0
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 2.5e-92 342.8 286 60.1
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 4.3e-92 342.0 289 58.8
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 5.6e-92 341.7 288 58.3
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 5.6e-92 341.7 259 62.2
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 7.3e-92 341.3 242 66.1
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 1.2e-91 340.5 292 57.9
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 1.6e-91 340.1 288 58.0
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 2.1e-91 339.7 294 58.8
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 2.1e-91 339.7 287 57.5
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 3.6e-91 339.0 295 56.3
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 6.2e-91 338.2 285 58.6
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 6.2e-91 338.2 287 57.5
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 6.2e-91 338.2 290 57.9
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 8.1e-91 337.8 290 57.6
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 8.1e-91 337.8 288 58.3
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 8.1e-91 337.8 288 58.0
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 1.8e-90 336.7 290 57.2
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 1.8e-90 336.7 290 57.2
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 1.8e-90 336.7 290 57.2
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 1.8e-90 336.7 290 57.2
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 3.1e-90 335.9 288 58.3
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 4.0e-90 335.5 287 56.8
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 5.2e-90 335.1 290 56.9
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 5.2e-90 335.1 291 56.4
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 5.2e-90 335.1 286 57.7
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 6.8e-90 334.7 244 64.3
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 8.9e-90 334.3 292 56.5
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 8.9e-90 334.3 294 57.1
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 8.9e-90 334.3 241 64.7
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 8.9e-90 334.3 246 62.2
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.5e-89 333.6 241 64.7
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 1.5e-89 333.6 295 56.6
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 1.5e-89 333.6 244 64.8
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 2.6e-89 332.8 288 57.3
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 3.4e-89 332.4 246 62.6
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 3.4e-89 332.4 241 64.7
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 4.4e-89 332.0 244 64.8
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 4.4e-89 332.0 290 57.2
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 5.8e-89 331.6 288 58.0
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 7.5e-89 331.3 240 65.8
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 9.9e-89 330.9 233 65.7
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 9.9e-89 330.9 288 57.3
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 1.3e-88 330.5 295 55.9
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 2.2e-88 329.7 288 57.3
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 2.9e-88 329.3 230 64.8
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 2.9e-88 329.3 297 55.9
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 3.7e-88 328.9 285 57.5
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 4.9e-88 328.6 292 55.8
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 4.9e-88 328.6 281 58.0
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 6.4e-88 328.2 241 64.3
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 6.4e-88 328.2 295 56.3
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 8.3e-88 327.8 288 57.6
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 1.4e-87 327.0 246 61.8
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 1.9e-87 326.6 290 55.9
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 2.4e-87 326.2 295 55.9
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 3.2e-87 325.9 289 56.7
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 3.2e-87 325.9 285 57.5
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 5.4e-87 325.1 296 54.4
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 5.4e-87 325.1 291 56.0
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 9.2e-87 324.3 288 56.2
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.2e-86 323.9 289 56.1
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.1e-86 323.2 318 53.5
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 7.8e-86 321.2 246 61.0
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.9e-84 316.6 319 52.0
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 1.2e-83 313.9 288 54.9
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 2.1e-83 313.2 286 55.9
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 6.8e-82 308.1 214 68.2
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 3.4e-81 305.8 238 60.5
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 4.9e-80 302.0 257 57.6
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.2e-78 297.4 265 57.4
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 8.7e-77 291.2 218 64.2
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 8.1e-75 284.6 218 63.3
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 6.9e-74 281.6 256 55.1
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 4.2e-71 272.3 259 55.6
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 4.6e-54 215.7 204 54.9
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 1.3e-53 214.2 240 45.8
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 3.0e-53 213.0 183 59.6
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 5.1e-53 212.2 284 41.9
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 9.3e-47 191.4 195 55.9
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 1.6e-46 190.7 146 62.3
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.7e-46 189.9 411 32.6
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 6.5e-40 168.7 118 62.7
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 4.6e-38 162.5 234 42.3
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 1.8e-37 160.6 118 60.2
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 2.0e-33 147.1 146 54.8
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.9e-31 140.6 224 41.1
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 1.0e-29 134.8 175 44.6
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 3.2e-23 113.2 107 57.0
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 2.3e-21 107.1 68 66.2
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 5.2e-21 105.9 82 64.6
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 1.5e-15 87.8 52 71.2
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 1.2e-12 78.2 60 58.3
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 2.6e-12 77.0 47 61.7
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 3.4e-12 76.6 107 40.2
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 6.3e-11 72.4 45 62.2
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.7e-09 67.0 46 56.5
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 4.5e-09 66.2 181 30.9
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 4.5e-09 66.2 50 58.0
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 1.0e-08 65.1 162 34.0
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 2.2e-08 63.9 45 57.8
PRCOL_00000730 Prasinoderma coloniale HOM05D016613 ORTHO05D014817 2.9e-08 63.5 184 29.9
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 5.0e-08 62.8 164 31.7
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 5.0e-08 62.8 181 31.5
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 5.0e-08 62.8 164 29.3
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 2.7e-06 57.0 45 53.3
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 3.6e-06 56.6 81 42.0


User provided reference genes

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