Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_20730 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.7e-308 1061.2 560 100.0
Pp3c3_12760 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.9e-205 719.5 499 71.9
SMO361G0110 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 9.6e-96 355.1 419 46.1
Mapoly0003s0092 Marchantia polymorpha HOM05D004707 ORTHO05D005837 9.6e-88 328.6 384 45.1
SMO361G0690 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 4.6e-82 309.7 421 42.5
AagrBONN_evm.TU.Sc2ySwM_368.2343 Anthoceros agrestis HOM05D004707 ORTHO05D005837 1.0e-81 308.5 374 43.6
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 1.3e-36 158.7 290 30.0
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 3.2e-35 154.1 290 29.3
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 2.1e-34 151.4 309 31.4
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 2.1e-34 151.4 309 31.4
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 3.6e-34 150.6 317 31.2
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 6.1e-34 149.8 309 31.1
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 6.1e-34 149.8 297 31.0
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 6.1e-34 149.8 286 32.2
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 8.0e-34 149.4 286 30.8
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 1.4e-33 148.7 277 31.0
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 1.8e-33 148.3 279 30.8
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 2.3e-33 147.9 292 30.8
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 2.3e-33 147.9 294 32.7
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 2.3e-33 147.9 353 29.2
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 2.3e-33 147.9 353 28.9
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 2.3e-33 147.9 279 30.5
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 3.0e-33 147.5 353 28.6
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 4.0e-33 147.1 279 31.2
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 6.8e-33 146.4 373 27.6
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 1.2e-32 145.6 286 30.8
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 2.0e-32 144.8 289 29.8
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 2.0e-32 144.8 324 28.7
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 2.6e-32 144.4 328 28.4
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 3.4e-32 144.1 279 30.5
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 3.4e-32 144.1 286 30.4
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 4.4e-32 143.7 472 26.1
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 5.7e-32 143.3 286 30.1
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 5.7e-32 143.3 290 27.9
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 5.7e-32 143.3 236 33.1
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 7.5e-32 142.9 279 31.2
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 9.8e-32 142.5 292 27.1
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 9.8e-32 142.5 286 29.7
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 1.3e-31 142.1 279 30.5
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 1.3e-31 142.1 279 29.7
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 2.2e-31 141.4 279 29.4
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 2.2e-31 141.4 315 27.9
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 2.2e-31 141.4 280 30.4
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 2.2e-31 141.4 286 29.4
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 2.2e-31 141.4 237 36.7
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 2.8e-31 141.0 292 27.7
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 3.7e-31 140.6 278 28.1
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 4.8e-31 140.2 234 32.5
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 4.8e-31 140.2 286 30.8
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 6.3e-31 139.8 236 33.1
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 1.1e-30 139.0 261 33.3
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 1.1e-30 139.0 279 29.7
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 1.8e-30 138.3 279 29.0
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.8e-30 138.3 240 32.1
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 2.4e-30 137.9 279 29.0
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 4.1e-30 137.1 234 32.1
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 7.0e-30 136.3 290 30.3
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 7.0e-30 136.3 290 27.9
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 7.0e-30 136.3 318 29.6
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 1.2e-29 135.6 279 29.7
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.2e-29 135.6 315 27.9
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 1.2e-29 135.6 235 35.7
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 1.2e-29 135.6 290 28.3
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.6e-29 135.2 290 30.0
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 1.6e-29 135.2 278 29.1
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.6e-29 135.2 278 29.5
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 1.6e-29 135.2 290 28.3
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 2.7e-29 134.4 291 28.2
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 3.5e-29 134.0 286 27.3
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.5e-29 133.7 315 27.9
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 4.5e-29 133.7 279 30.5
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 7.7e-29 132.9 280 31.1
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 7.7e-29 132.9 330 27.6
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 7.7e-29 132.9 315 27.9
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.0e-28 132.5 330 27.6
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 1.3e-28 132.1 279 29.7
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 1.7e-28 131.7 292 28.4
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 2.3e-28 131.3 279 28.3
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 2.9e-28 131.0 287 27.5
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.9e-28 131.0 315 27.6
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 2.9e-28 131.0 279 29.0
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 3.8e-28 130.6 293 26.6
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 5.0e-28 130.2 343 28.0
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 6.6e-28 129.8 325 27.1
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 6.6e-28 129.8 293 26.6
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 8.6e-28 129.4 315 27.3
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.1e-27 129.0 299 28.8
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 1.9e-27 128.3 279 28.7
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 7.2e-27 126.3 279 28.7
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 7.2e-27 126.3 306 27.5
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 7.2e-27 126.3 281 27.8
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 9.5e-27 125.9 234 29.9
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 1.6e-26 125.2 297 29.0
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 2.1e-26 124.8 235 29.8
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 2.8e-26 124.4 254 28.3
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 2.8e-26 124.4 332 26.8
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 2.8e-26 124.4 236 31.4
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 1.2e-24 119.0 280 27.9
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 3.4e-24 117.5 251 28.7
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 8.3e-23 112.8 292 25.3
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 4.1e-22 110.5 242 28.5
CDE04G1515 Ceratophyllum demersum HOM05D004707 ORTHO05D005837 1.6e-21 108.6 164 34.8
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 7.8e-21 106.3 190 33.2
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 1.0e-20 105.9 268 27.2
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 2.9e-20 104.4 268 26.9
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 3.9e-20 104.0 279 27.2
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 3.9e-20 104.0 351 23.4
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.1e-19 102.4 234 31.2
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 2.5e-19 101.3 186 31.7
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 2.5e-19 101.3 206 30.1
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 3.6e-18 97.4 185 29.2
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 6.1e-18 96.7 196 31.1
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 8.9e-17 92.8 222 26.6
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 8.9e-17 92.8 194 24.7
MCO12G417 Micromonas commoda HOM05D004707 ORTHO05D005837 1.2e-16 92.4 190 34.7
Pp3c9_20120 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.0e-16 91.7 169 31.4
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 6.4e-15 86.7 280 26.8
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 6.4e-15 86.7 311 24.1
PRCOL_00003228 Prasinoderma coloniale HOM05D002409 ORTHO05D002557 7.0e-14 83.2 208 30.3
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 1.3e-12 79.0 234 25.2
Cre07.g329300 Chlamydomonas reinhardtii HOM05D004707 ORTHO05D005837 2.3e-12 78.2 256 29.7
Cre01.g055432 Chlamydomonas reinhardtii HOM05D002409 ORTHO05D002557 5.0e-12 77.0 200 26.0
ECA238G1520 Erigeron canadensis HOM05D002409 ORTHO05D002557 2.8e-10 71.2 195 25.6
MCO04G456 Micromonas commoda HOM05D002409 ORTHO05D002557 2.8e-10 71.2 121 33.1
Pp3c2_38000 Physcomitrium patens HOM05D002409 ORTHO05D002557 2.8e-10 71.2 227 25.1
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 4.7e-10 70.5 234 26.1
Cre01.g035750 Chlamydomonas reinhardtii HOM05D004707 ORTHO05D005837 6.2e-10 70.1 152 27.6
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 8.0e-10 69.7 157 29.3
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 8.0e-10 69.7 234 23.5
Cre01.g035600 Chlamydomonas reinhardtii HOM05D004707 ORTHO05D005837 4.0e-09 67.4 180 27.8
HanXRQChr14g0442971 Helianthus annuus HOM05D002409 ORTHO05D002557 5.2e-09 67.0 195 24.6
SEGI_38275 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 6.8e-09 66.6 74 41.9
vmacro04652 Vaccinium macrocarpon HOM05D002409 ORTHO05D002557 6.8e-09 66.6 284 24.6
Rhsim07G0211900 Rhododendron simsii HOM05D002409 ORTHO05D002557 4.4e-08 63.9 196 25.0
CBR_g30189 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-07 60.1 185 28.1
Medtr8g031050 Medicago truncatula HOM05D004707 ORTHO05D005837 7.0e-06 56.6 82 36.6


User provided reference genes

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