Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 0.0e+00 1300.4 819 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 5.0e-93 346.7 449 46.1
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 8.2e-88 329.3 845 42.0
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 6.6e-69 266.5 672 30.7
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 1.0e-66 259.2 732 38.5
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 2.8e-51 208.0 801 26.6
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 2.7e-46 191.4 736 25.8
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 4.6e-46 190.7 758 27.0
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.0e-45 189.5 769 25.2
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 1.9e-44 185.3 759 26.1
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.9e-44 185.3 792 24.5
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 3.3e-44 184.5 770 26.0
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 3.3e-44 184.5 763 25.7
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 6.2e-43 180.3 792 26.8
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 1.1e-42 179.5 783 33.2
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.1e-42 179.5 780 31.7
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 1.1e-42 179.5 703 24.8
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.8e-42 178.7 774 25.2
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 5.2e-42 177.2 742 36.0
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 6.8e-42 176.8 746 27.3
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 8.9e-42 176.4 725 25.4
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 8.9e-42 176.4 725 31.6
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 5.8e-41 173.7 779 26.1
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 7.6e-41 173.3 769 29.1
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 9.9e-41 172.9 754 26.1
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 1.3e-40 172.6 761 28.1
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 3.8e-40 171.0 726 28.4
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 1.9e-39 168.7 777 24.8
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 3.2e-39 167.9 748 31.3
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 7.1e-39 166.8 563 27.7
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 9.2e-39 166.4 525 27.0
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.2e-38 166.0 684 26.2
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 2.7e-38 164.9 666 27.0
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 4.6e-38 164.1 685 26.3
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 6.0e-38 163.7 721 25.5
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 6.0e-38 163.7 772 24.6
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 1.7e-37 162.2 666 26.9
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 2.3e-37 161.8 544 26.5
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 2.3e-37 161.8 544 25.4
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 3.0e-37 161.4 765 23.3
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 3.9e-37 161.0 527 28.1
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 3.9e-37 161.0 527 28.1
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 9.6e-36 156.4 638 24.9
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.2e-35 156.0 853 23.6
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 2.1e-35 155.2 689 25.4
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 2.1e-35 155.2 808 23.9
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 6.2e-35 153.7 737 23.3
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 8.1e-35 153.3 710 29.3
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 1.4e-34 152.5 781 25.0
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 3.1e-34 151.4 822 22.9
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 8.9e-34 149.8 851 23.3
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 1.2e-33 149.4 724 23.3
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 2.0e-33 148.7 735 23.4
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 2.0e-33 148.7 721 23.3
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 2.0e-33 148.7 775 22.7
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 2.6e-33 148.3 590 26.1
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 3.4e-33 147.9 526 27.6
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 3.4e-33 147.9 736 25.0
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 4.4e-33 147.5 745 24.0
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 5.8e-33 147.1 779 24.1
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 5.8e-33 147.1 779 24.1
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 9.9e-33 146.4 786 30.7
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 9.9e-33 146.4 833 23.5
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 1.3e-32 146.0 809 23.2
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 3.8e-32 144.4 724 22.9
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 4.9e-32 144.1 751 24.0
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 6.4e-32 143.7 743 22.5
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 6.4e-32 143.7 781 24.1
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 1.1e-31 142.9 716 25.8
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 1.4e-31 142.5 527 25.6
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 3.2e-31 141.4 676 23.1
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 3.2e-31 141.4 551 26.0
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 5.4e-31 140.6 767 22.4
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 7.1e-31 140.2 781 22.7
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 1.6e-30 139.0 742 22.9
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 7.8e-30 136.7 767 22.3
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 7.8e-30 136.7 749 23.2
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 7.8e-30 136.7 809 22.6
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 1.0e-29 136.3 574 24.0
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 1.3e-29 136.0 738 22.6
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 3.0e-29 134.8 541 26.2
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 3.9e-29 134.4 846 22.7
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 1.1e-28 132.9 861 23.1
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 1.1e-28 132.9 733 22.8
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 1.9e-28 132.1 737 22.7
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 7.3e-28 130.2 839 25.0
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 1.3e-27 129.4 838 29.2
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 1.6e-27 129.0 608 23.7
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 3.6e-27 127.9 569 23.7
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 3.6e-27 127.9 742 22.4
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 2.4e-26 125.2 561 23.5
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 3.1e-26 124.8 820 22.2
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 6.9e-26 123.6 688 22.4
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 2.2e-24 118.6 746 22.9
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 4.2e-23 114.4 755 22.4
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 7.4e-20 103.6 731 23.0
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 2.1e-19 102.1 606 28.2
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 1.8e-18 99.0 588 23.0
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 1.4e-15 89.4 445 22.5
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 1.9e-15 89.0 340 27.1
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 2.7e-14 85.1 604 21.9
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 6.0e-14 84.0 615 22.8
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 1.6e-11 75.9 218 28.0
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 4.0e-10 71.2 501 22.8
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 5.3e-10 70.9 163 28.8
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 6.9e-10 70.5 162 29.6
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 1.2e-09 69.7 162 29.0
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 2.6e-09 68.6 162 28.4
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 3.4e-09 68.2 162 27.2
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 4.5e-09 67.8 162 26.5
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 4.5e-09 67.8 162 26.5
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 5.8e-09 67.4 162 28.4
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 5.8e-09 67.4 162 27.2
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 1.0e-08 66.6 162 26.5
TPR.G30250 Trifolium pratense HOM05D000855 ORTHO05D008530 1.0e-08 66.6 161 28.6
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 1.3e-08 66.2 162 27.2
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 1.7e-08 65.9 197 24.9
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 2.9e-08 65.1 162 26.5
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 3.8e-08 64.7 143 28.0
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 3.8e-08 64.7 162 25.9
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 3.8e-08 64.7 308 23.4
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 4.9e-08 64.3 160 26.2
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 6.5e-08 63.9 160 26.9
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 6.5e-08 63.9 159 26.4
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 8.4e-08 63.5 159 27.0
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 8.4e-08 63.5 159 27.7
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 1.1e-07 63.2 162 26.5
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 1.1e-07 63.2 159 27.0
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 1.4e-07 62.8 159 25.8
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 1.9e-07 62.4 161 26.1
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 1.9e-07 62.4 169 24.3
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 1.9e-07 62.4 140 29.3
CSS0013853 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 3.2e-07 61.6 162 25.3
CSS0023086 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 3.2e-07 61.6 162 25.3
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 3.2e-07 61.6 159 25.8
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 3.2e-07 61.6 159 25.8
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 4.2e-07 61.2 163 27.0
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 4.2e-07 61.2 163 27.0
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 7.1e-07 60.5 162 25.3
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 7.1e-07 60.5 162 25.9
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 7.1e-07 60.5 143 30.1
Actinidia04698 Actinidia chinensis HOM05D000855 ORTHO05D008530 9.3e-07 60.1 162 25.3
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 9.3e-07 60.1 139 29.5
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 1.2e-06 59.7 131 30.5
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 1.2e-06 59.7 199 23.6
SMO364G0438 Selaginella moellendorffii HOM05D000855 ORTHO05D008530 1.6e-06 59.3 209 29.2
Thecc.05G053600 Theobroma cacao HOM05D000855 ORTHO05D008530 1.6e-06 59.3 162 27.8
Ah.08g211930 Amaranthus hybridus HOM05D000855 ORTHO05D008530 2.7e-06 58.5 197 23.9
AUR62040505 Chenopodium quinoa HOM05D000855 ORTHO05D008530 2.7e-06 58.5 161 26.1
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 2.7e-06 58.5 140 28.6
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.6e-06 57.8 159 25.2
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 7.9e-06 57.0 143 26.6
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 7.9e-06 57.0 139 28.1


User provided reference genes

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