Gene: Solyc04g082320.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g082320.3
  • Transcript Identifier Solyc04g082320.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 63996964-64005262 : negative

Gene Family Information

  • ID HOM05D005833
  • #Genes/#Species 134/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g082320.3.1
  • uniprot A0A3Q7GCE1
  • gene_id Solyc04g082320

Descriptions

  • Description Pentatricopeptide repeat (AHRD V3.3 *** A0A200QNE8_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0000462
IBA
GOA Databasematuration of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000479
IBA
GOA Databaseendonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003924
IBA
GOA DatabaseGTPase activity
GO:0034511
IBA
GOA DatabaseU3 snoRNA binding
GO:0005525
IBA
GOA DatabaseGTP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IEA
GOA Databasenucleolus
GO:0005634
IEA
GOA Databasenucleus
GO:0030688
IBA
GOA Databasepreribosome, small subunit precursor

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
35.1 not assigned.annotated