Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 0.0e+00 2942.9 1496 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 0.0e+00 1198.0 1531 44.3
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 0.0e+00 1110.5 1536 42.8
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 2.1e-267 926.8 1538 37.9
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.7e-261 907.1 1544 37.5
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 3.6e-259 899.4 1546 36.4
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 5.4e-255 885.6 1550 36.7
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 7.4e-252 875.2 1543 36.2
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 6.2e-251 872.1 1552 37.0
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 4.9e-248 862.4 1554 35.6
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 6.0e-246 855.5 1406 37.7
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 3.0e-245 853.2 1535 35.8
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 3.3e-244 849.7 1499 35.9
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 5.7e-244 849.0 1549 35.8
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 1.6e-243 847.4 1529 36.0
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 7.6e-241 838.6 1580 35.3
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 5.0e-240 835.9 1532 35.8
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 6.1e-238 828.9 1540 35.6
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 1.8e-237 827.4 1538 35.7
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 8.7e-237 825.1 1536 34.9
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 4.3e-236 822.8 1524 35.5
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 9.7e-236 821.6 1524 35.6
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 3.7e-235 819.7 1537 35.5
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 8.2e-235 818.5 1530 35.9
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 8.2e-235 818.5 1466 36.2
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.4e-234 817.8 1152 41.5
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 3.1e-234 816.6 1534 34.9
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 5.3e-234 815.8 1532 35.5
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 9.0e-234 815.1 1548 34.9
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.2e-232 810.4 1524 35.4
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 2.9e-232 810.1 1524 35.5
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 3.8e-232 809.7 1536 34.5
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 1.4e-231 807.7 1550 34.6
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 2.5e-231 807.0 1561 34.4
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 5.5e-231 805.8 1520 34.9
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 1.0e-229 801.6 1521 34.9
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 1.8e-229 800.8 1524 35.1
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 2.5e-228 797.0 1536 34.6
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 4.3e-228 796.2 1534 35.3
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 4.3e-228 796.2 1527 35.0
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 2.2e-227 793.9 1532 35.1
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 4.8e-227 792.7 1530 35.0
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 1.4e-226 791.2 1551 34.6
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 1.4e-226 791.2 1551 34.6
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 1.2e-225 788.1 1532 34.9
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 5.9e-225 785.8 1528 35.1
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 1.0e-224 785.0 1554 34.3
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.0e-224 785.0 1545 34.7
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 4.2e-223 779.6 1541 34.1
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 1.6e-222 777.7 1558 33.5
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 4.7e-222 776.2 1525 34.6
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 4.7e-222 776.2 1535 35.3
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 1.8e-221 774.2 1526 34.3
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 1.8e-221 774.2 1541 34.5
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 2.3e-221 773.9 1543 35.1
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 1.1e-220 771.5 1528 33.4
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 5.7e-220 769.2 1528 34.6
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 1.7e-219 767.7 1545 33.7
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 1.1e-218 765.0 1542 33.8
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 1.8e-218 764.2 1333 36.5
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 1.2e-217 761.5 1573 33.7
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 7.7e-217 758.8 1537 34.2
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 1.7e-216 757.7 1540 34.1
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 3.8e-216 756.5 1547 34.1
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 6.5e-216 755.7 1578 33.5
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 1.9e-215 754.2 1533 34.1
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 8.0e-214 748.8 1535 33.9
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 1.8e-213 747.7 1630 33.9
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 5.2e-213 746.1 1572 33.6
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 1.1e-212 745.0 1538 33.8
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 4.4e-212 743.0 1544 33.7
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 5.7e-212 742.7 1544 33.9
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 7.4e-212 742.3 1533 33.7
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 4.8e-211 739.6 1545 33.3
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 1.1e-210 738.4 1547 33.0
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 1.8e-210 737.6 1562 33.5
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 3.1e-210 736.9 1526 32.6
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 2.0e-209 734.2 1528 33.4
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 2.6e-209 733.8 1557 33.1
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 1.7e-208 731.1 1271 37.0
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 2.7e-206 723.8 1538 32.9
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 8.0e-206 722.2 1482 32.9
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 9.8e-204 715.3 1198 37.4
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 6.3e-203 712.6 1474 34.7
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.4e-202 711.4 1124 38.8
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 1.9e-199 701.0 1150 37.7
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 5.2e-197 693.0 1531 33.5
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 2.4e-194 684.1 1319 34.9
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 4.7e-190 669.8 1402 33.6
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 1.2e-188 665.2 1562 31.6
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.7e-187 661.4 1566 31.6
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 4.9e-187 659.8 1161 36.6
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 3.5e-185 653.7 1793 28.8
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.3e-184 651.0 1585 31.4
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 1.0e-181 642.1 1008 39.1
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.7e-179 634.8 1159 35.0
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 4.3e-175 620.2 1015 36.8
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 9.5e-175 619.0 1129 36.0
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-143 513.1 1076 32.9
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.7e-134 484.2 583 47.3
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 3.2e-122 444.5 597 44.4
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 7.9e-121 439.9 621 41.5
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 2.6e-116 424.9 588 41.7
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 1.4e-112 412.5 1036 30.6
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 7.0e-101 373.6 624 38.3
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.6e-95 355.1 588 39.1
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 3.1e-93 348.2 982 28.9
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 2.2e-91 342.0 1035 28.6
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 4.2e-90 337.8 1039 28.6
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-84 319.7 479 40.9
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 6.5e-83 313.9 555 35.9
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.7e-81 308.5 606 31.8
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.6e-81 308.1 893 27.8
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 2.2e-78 298.9 650 32.6
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.3e-62 246.5 359 41.2
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 6.4e-62 244.2 496 34.3
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.3e-58 230.7 358 38.0
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.9e-54 218.0 304 42.4
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.4e-45 189.9 509 28.3
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.9e-38 165.6 316 34.2
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 4.9e-38 164.9 459 27.7
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 7.1e-37 161.0 254 43.3
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.9e-29 136.3 321 28.3
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.9e-29 136.3 164 42.1
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 7.1e-29 134.4 675 25.0
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 9.3e-29 134.0 223 35.9
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.1e-26 127.1 329 28.3
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 1.1e-24 120.6 118 54.2
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 9.0e-24 117.5 957 23.4
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 9.0e-24 117.5 182 42.3
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 1.5e-23 116.7 273 32.6
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 2.2e-22 112.8 388 26.3
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 2.9e-22 112.5 275 30.2
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-21 110.5 218 34.9
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 9.3e-21 107.5 262 29.0
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 7.9e-20 104.4 262 29.4
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.5e-18 100.1 136 39.7
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 5.6e-18 98.2 126 46.0
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 6.2e-17 94.7 215 29.8
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 8.1e-17 94.4 258 27.5
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 4.5e-15 88.6 108 43.5
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.7e-14 86.7 116 37.9
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 5.5e-13 81.6 121 36.4
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 2.3e-11 76.3 246 26.0
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.1e-10 73.9 168 33.3
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 1.8e-08 66.6 148 30.4
CBR_g55213 Chara braunii HOM05D001082 ORTHO05D005120 4.1e-08 65.5 88 43.2
Cfa021815 Carpinus fangiana HOM05D001082 ORTHO05D125198 2.6e-07 62.8 267 25.1
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 5.9e-07 61.6 147 27.9


User provided reference genes

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