Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.9e-139 499.2 254 100.0
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 3.6e-66 255.8 243 57.6
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 4.7e-66 255.4 244 55.7
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 1.4e-65 253.8 250 56.0
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.2e-64 250.8 246 56.5
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 1.5e-64 250.4 197 64.0
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 3.4e-64 249.2 242 55.8
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 3.4e-64 249.2 243 56.4
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 9.8e-64 247.7 243 57.2
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 9.8e-64 247.7 243 56.8
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 1.3e-63 247.3 244 56.1
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 1.3e-63 247.3 252 56.0
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 1.3e-63 247.3 252 54.4
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 1.7e-63 246.9 243 57.6
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 2.2e-63 246.5 247 57.1
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 2.2e-63 246.5 238 58.8
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 3.7e-63 245.7 263 54.4
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 3.7e-63 245.7 217 62.2
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.7e-63 245.7 245 57.6
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 3.7e-63 245.7 245 57.6
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 3.7e-63 245.7 244 55.7
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 4.9e-63 245.4 245 57.6
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 4.9e-63 245.4 192 66.1
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 6.3e-63 245.0 244 57.0
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 8.3e-63 244.6 198 63.6
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 8.3e-63 244.6 242 55.4
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 8.3e-63 244.6 248 56.5
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 1.1e-62 244.2 193 63.2
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 1.4e-62 243.8 245 56.3
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 1.8e-62 243.4 241 56.4
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 2.4e-62 243.0 249 56.6
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 2.4e-62 243.0 244 54.5
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 3.1e-62 242.7 242 55.0
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 3.1e-62 242.7 215 58.6
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 4.1e-62 242.3 245 55.5
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 4.1e-62 242.3 242 56.2
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 4.1e-62 242.3 243 56.0
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 4.1e-62 242.3 195 62.6
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 5.4e-62 241.9 201 62.7
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 5.4e-62 241.9 201 62.7
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 5.4e-62 241.9 244 55.7
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 9.2e-62 241.1 253 53.8
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 1.2e-61 240.7 244 55.7
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.2e-61 240.7 241 55.2
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 1.6e-61 240.4 244 55.7
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 1.6e-61 240.4 190 61.6
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.0e-61 240.0 216 57.9
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 2.7e-61 239.6 242 55.8
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 3.5e-61 239.2 246 54.9
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 3.5e-61 239.2 245 54.7
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 5.9e-61 238.4 239 55.6
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 5.9e-61 238.4 246 54.5
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 5.9e-61 238.4 241 53.5
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 5.9e-61 238.4 248 53.6
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 7.7e-61 238.0 246 56.1
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 7.7e-61 238.0 242 55.4
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 7.7e-61 238.0 244 52.5
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.0e-60 237.7 214 59.3
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.0e-60 237.7 244 55.3
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.3e-60 237.3 245 55.1
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.3e-60 237.3 242 55.8
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.3e-60 237.3 241 56.0
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 1.3e-60 237.3 194 61.3
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 1.7e-60 236.9 253 53.8
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 2.3e-60 236.5 249 53.0
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 2.3e-60 236.5 243 54.3
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 2.9e-60 236.1 193 60.6
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 3.8e-60 235.7 249 52.6
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 3.8e-60 235.7 262 53.1
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 3.8e-60 235.7 246 54.9
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 5.0e-60 235.3 253 51.4
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 5.0e-60 235.3 247 52.2
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 5.0e-60 235.3 243 53.5
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 5.0e-60 235.3 241 54.4
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 6.6e-60 235.0 249 53.8
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 1.9e-59 233.4 244 54.9
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 3.3e-59 232.6 187 62.0
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 9.5e-59 231.1 257 51.8
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.6e-58 230.3 187 63.6
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 1.6e-58 230.3 241 53.9
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.1e-58 229.9 249 53.0
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 3.6e-58 229.2 241 53.9
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 3.6e-58 229.2 259 51.7
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 4.7e-58 228.8 242 52.1
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 6.1e-58 228.4 271 51.3
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 1.0e-57 227.6 244 53.7
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 3.0e-57 226.1 213 55.4
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 4.0e-57 225.7 248 50.8
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 4.0e-57 225.7 247 51.8
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 5.2e-57 225.3 246 53.3
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.6e-56 223.0 216 56.0
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 5.7e-56 221.9 160 68.1
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 5.7e-56 221.9 247 51.0
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 5.7e-56 221.9 190 58.4
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 1.7e-55 220.3 145 70.3
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.9e-55 219.5 246 52.0
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 6.4e-55 218.4 246 52.4
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 1.1e-54 217.6 190 57.4
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 1.1e-54 217.6 242 50.0
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 1.4e-54 217.2 141 72.3
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.8e-54 216.9 140 73.6
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 2.4e-54 216.5 199 55.3
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 5.4e-54 215.3 138 73.9
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 9.2e-54 214.5 190 56.3
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.0e-53 213.4 246 51.2
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 3.5e-53 212.6 247 48.2
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 9.5e-51 204.5 218 50.9
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 1.6e-50 203.8 248 50.8
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 9.2e-46 188.0 242 49.6
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 3.0e-44 183.0 257 44.4
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 4.9e-39 165.6 196 48.0
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 3.8e-31 139.4 186 49.5
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 6.4e-31 138.7 180 48.9
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 5.2e-25 119.0 172 44.8
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 1.1e-22 111.3 59 81.4
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 1.4e-22 110.9 97 55.7
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 2.4e-22 110.2 79 65.8
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 1.7e-20 104.0 61 77.0
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 6.6e-20 102.1 67 71.6
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 3.3e-19 99.8 56 78.6
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 5.3e-17 92.4 78 55.1
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 1.3e-15 87.8 154 37.0
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 2.2e-15 87.0 194 32.0
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 7.9e-13 78.6 137 34.3
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.8e-12 77.4 63 58.7
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 1.5e-11 74.3 63 58.7
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 7.4e-11 72.0 64 54.7
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.5e-08 64.3 197 29.9
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 9.9e-08 61.6 33 78.8
Cre11.g467659 Chlamydomonas reinhardtii HOM05D005962 ORTHO05D007325 7.1e-06 55.5 135 28.9


User provided reference genes

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