Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 3.5e-258 895.2 751 100.0
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.5e-245 853.2 662 96.7
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.7e-202 709.5 659 87.9
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 1.2e-189 667.5 675 83.6
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 3.8e-188 662.5 675 83.3
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 6.0e-186 655.2 678 81.3
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 7.6e-181 638.3 638 83.4
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 1.1e-179 634.4 662 82.0
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 4.2e-179 632.5 649 82.9
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 1.9e-176 623.6 682 80.1
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.3e-176 622.5 651 82.2
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.6e-175 620.5 689 78.2
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 1.1e-174 617.8 656 81.7
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.4e-174 617.5 671 79.1
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 1.4e-174 617.5 668 80.8
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 6.9e-174 615.1 671 79.4
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 6.9e-174 615.1 670 80.4
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.0e-172 611.3 628 83.9
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 1.7e-172 610.5 655 60.9
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 6.5e-172 608.6 680 79.1
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 8.4e-172 608.2 671 78.7
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 1.9e-171 607.1 675 81.3
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 4.2e-171 605.9 674 77.6
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.2e-170 604.4 677 77.8
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 1.6e-170 604.0 685 60.3
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 1.0e-169 601.3 679 79.4
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 8.7e-169 598.2 667 79.3
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 1.1e-168 597.8 652 73.0
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 4.8e-167 592.4 651 79.9
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 2.4e-166 590.1 665 80.6
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 9.0e-166 588.2 665 79.2
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.5e-165 585.9 665 78.9
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 1.7e-164 583.9 653 76.1
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 1.1e-163 581.3 670 79.0
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 1.4e-163 580.9 661 79.3
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 9.3e-163 578.2 659 77.4
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.1e-162 577.0 665 77.9
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 5.7e-160 568.9 668 76.5
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 4.8e-159 565.8 641 79.1
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 3.1e-158 563.1 682 66.0
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.9e-158 562.0 714 60.6
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 9.0e-158 561.6 650 79.7
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 3.2e-155 553.1 661 76.7
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 4.2e-155 552.7 645 77.5
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 1.2e-154 551.2 768 59.1
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 1.6e-154 550.8 659 76.9
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 1.4e-153 547.7 649 76.0
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 1.8e-153 547.4 660 76.2
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 4.3e-152 542.7 647 76.5
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.3e-151 541.2 649 76.1
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 2.4e-150 537.0 649 74.6
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 9.1e-150 535.0 681 73.4
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 1.2e-149 534.6 676 74.6
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 1.3e-148 531.2 666 74.0
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 1.1e-147 528.1 670 73.3
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 2.1e-146 523.9 649 75.2
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 3.6e-146 523.1 635 76.1
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 4.7e-146 522.7 680 57.1
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 1.0e-145 521.5 673 74.3
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.3e-145 520.4 647 50.4
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 3.3e-144 516.5 649 75.8
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 7.4e-144 515.4 654 74.8
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 9.7e-144 515.0 653 74.1
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.8e-142 510.8 655 74.7
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 2.4e-142 510.4 780 50.9
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 5.9e-141 505.8 648 76.4
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 2.7e-138 496.9 667 64.6
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 9.7e-136 488.4 678 71.2
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 3.1e-134 483.4 660 62.0
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 8.5e-132 475.3 654 71.1
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.5e-131 474.6 676 70.9
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 9.4e-131 471.9 778 51.7
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 2.1e-130 470.7 660 62.7
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 1.4e-129 468.0 645 73.2
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 2.3e-129 467.2 531 82.7
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 4.0e-129 466.5 614 71.7
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 5.2e-129 466.1 650 57.7
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 4.4e-128 463.0 658 70.5
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.3e-127 461.5 679 66.6
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 9.4e-123 445.3 617 73.9
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 1.8e-118 431.0 671 68.3
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 3.1e-118 430.3 638 71.0
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 4.1e-118 429.9 639 72.5
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 7.0e-118 429.1 519 69.7
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 1.2e-117 428.3 637 71.0
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 1.2e-117 428.3 583 73.9
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 2.8e-114 417.2 664 67.0
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 8.0e-114 415.6 633 73.0
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 8.0e-114 415.6 642 70.4
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 1.0e-113 415.2 642 70.4
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 1.4e-113 414.8 633 71.1
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 6.8e-113 412.5 637 71.3
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 9.8e-112 408.7 637 71.4
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 1.3e-111 408.3 635 72.1
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 8.3e-111 405.6 639 71.8
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 1.8e-110 404.4 641 70.2
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 2.0e-109 401.0 671 67.1
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 1.3e-108 398.3 652 60.6
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 1.3e-108 398.3 635 71.8
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 5.0e-108 396.4 635 70.6
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 4.0e-105 386.7 348 58.0
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 2.0e-104 384.4 594 73.7
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 5.8e-104 382.9 635 70.9
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 1.3e-103 381.7 635 70.9
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 9.2e-102 375.6 641 69.3
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.1e-93 347.8 339 55.5
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 1.3e-92 345.1 411 51.8
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 4.9e-87 326.6 348 54.6
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 1.4e-81 308.5 461 77.2
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 7.6e-80 302.8 559 55.6
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 3.9e-76 290.4 355 48.2
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 2.4e-73 281.2 358 76.5
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 1.7e-71 275.0 342 52.6
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 2.9e-71 274.2 439 78.1
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 8.4e-71 272.7 422 78.4
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 4.6e-69 266.9 414 46.1
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 9.6e-67 259.2 500 71.0
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 1.3e-66 258.8 259 58.3
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 9.9e-64 249.2 441 73.7
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-60 237.7 429 75.5
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.9e-60 237.3 429 76.2
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.1e-58 229.6 425 70.6
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 2.4e-57 228.0 132 84.8
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 2.0e-56 224.9 438 44.5
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 1.7e-55 221.9 145 75.2
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 4.9e-55 220.3 668 55.4
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.6e-50 205.3 129 76.0
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.3e-47 195.7 166 61.4
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 1.5e-43 182.2 276 46.4
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.2e-40 172.6 302 40.7
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 4.6e-37 160.6 365 46.6
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 4.6e-37 160.6 117 66.7
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 2.3e-36 158.3 204 50.0
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.8e-34 150.6 134 58.2
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 4.8e-34 150.6 381 74.8
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 6.9e-33 146.7 404 57.9
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 9.1e-33 146.4 371 75.7
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 9.1e-33 146.4 244 45.9
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.7e-31 142.1 77 84.4
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.1e-30 139.4 78 82.1
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.5e-30 138.3 120 64.2
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 4.2e-30 137.5 92 72.8
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-29 134.4 139 49.6
Actinidia13019 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.0e-28 132.9 174 50.0
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.3e-28 131.7 136 52.9
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 3.9e-28 131.0 136 52.2
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.9e-28 131.0 139 48.2
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 8.8e-28 129.8 136 53.7
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 2.0e-27 128.6 139 47.5
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 2.0e-27 128.6 139 47.5
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.0e-27 128.6 136 51.5
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.5e-24 117.9 344 35.2
Actinidia19465 Actinidia chinensis HOM05D003406 ORTHO05D004026 5.9e-24 117.1 200 45.0
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 1.0e-23 116.3 366 43.7
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.3e-23 115.9 89 59.6
Hma1.2p1_1396F.1_g280660 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 8.5e-23 113.2 87 65.5
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 4.7e-21 107.5 349 32.1
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 6.1e-21 107.1 109 50.5
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 4.0e-20 104.4 384 30.2
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 7.5e-19 100.1 78 53.8
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 5.3e-17 94.0 62 69.4
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 7.0e-17 93.6 53 73.6
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 3.5e-16 91.3 56 78.6
Aqoxy2G01592 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 2.9e-15 88.2 134 41.8
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 2.5e-14 85.1 92 53.3
arahy.Tifrunner.gnm1.ann1.JYS69T Arachis hypogaea HOM05D003406 ORTHO05D004026 9.4e-14 83.2 67 62.7
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 2.7e-13 81.6 47 83.0
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 2.7e-13 81.6 47 83.0
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 2.7e-13 81.6 53 79.2
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 66.7
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 66.7
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 66.7
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 66.7
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 66.7
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 66.7
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 66.7
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.0e-13 80.1 54 64.8
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 4.0e-12 77.8 151 31.1
PSO170G3342 Papaver somniferum HOM05D002729 ORTHO05D305508 2.6e-11 75.1 90 48.9
PSO063G4288 Papaver somniferum HOM05D002729 ORTHO05D305335 4.4e-11 74.3 90 48.9
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 7.5e-11 73.6 49 75.5
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.3e-10 72.8 45 75.6
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.3e-10 70.1 75 58.7
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-09 69.3 75 58.7
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 5.0e-07 60.8 72 40.3
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 5.0e-07 60.8 39 74.4
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-07 60.1 38 68.4


User provided reference genes

Program Settings