Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1614.4 811 100.0
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1565.4 811 96.8
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1324.3 811 84.2
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 0.0e+00 1295.0 828 81.4
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 0.0e+00 1182.5 817 74.9
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 0.0e+00 1130.5 820 73.3
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 0.0e+00 1130.2 809 72.4
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1109.7 627 90.9
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 0.0e+00 1107.4 821 72.4
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 0.0e+00 1098.2 822 71.9
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 0.0e+00 1096.6 820 72.2
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 0.0e+00 1090.9 809 70.1
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 0.0e+00 1088.2 815 72.0
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 0.0e+00 1086.2 812 70.9
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 5.5e-312 1073.5 809 70.3
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.7e-311 1072.4 810 70.4
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 2.2e-311 1072.0 820 70.5
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 9.7e-307 1056.6 819 67.9
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 1.3e-306 1056.2 816 69.4
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 2.4e-305 1052.0 809 68.4
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.2e-303 1045.4 820 69.6
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 2.9e-303 1045.0 810 68.0
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 1.1e-302 1043.1 826 66.9
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.9e-302 1042.3 809 68.1
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.0e-300 1036.6 826 66.3
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.3e-298 1029.6 804 67.8
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 1.7e-298 1029.2 811 66.5
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 8.5e-295 1016.9 814 65.5
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 3.2e-294 1015.0 815 66.5
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 3.2e-294 1015.0 815 66.5
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.2e-294 1013.8 805 66.8
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 8.0e-293 1010.4 858 64.5
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.4e-292 1009.6 826 65.9
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.8e-292 1009.2 814 66.2
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.5e-291 1006.1 720 73.6
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.0e-291 1005.7 789 69.3
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 1.8e-289 999.2 816 65.9
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.6e-288 996.1 809 65.8
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 5.7e-283 977.6 836 63.6
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 2.2e-282 975.7 725 70.9
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 4.1e-281 971.5 849 62.8
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 5.9e-280 967.6 817 64.6
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 2.0e-275 952.6 814 63.0
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.7e-274 949.5 817 63.2
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 2.8e-274 948.7 817 63.2
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 4.1e-273 944.9 814 62.4
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.6e-272 943.0 834 60.8
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 6.1e-269 931.0 814 63.4
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 2.0e-267 926.0 831 62.5
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 2.8e-266 922.2 824 60.9
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 2.0e-264 916.0 815 62.5
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 3.5e-264 915.2 824 60.6
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 5.0e-263 911.4 834 60.2
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 2.8e-261 905.6 863 58.9
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 4.0e-260 901.7 814 61.4
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 5.2e-260 901.4 872 57.1
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 3.2e-257 892.1 831 60.4
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 2.5e-254 882.5 875 57.7
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 9.5e-254 880.6 822 59.6
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 6.4e-250 867.8 845 57.3
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 7.0e-249 864.4 924 55.2
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.6e-248 863.2 981 53.3
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 1.7e-247 859.8 923 55.5
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 3.0e-247 859.0 842 58.3
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 3.9e-247 858.6 815 58.7
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 6.6e-247 857.8 821 59.0
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 2.6e-243 845.9 805 58.6
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 4.4e-243 845.1 811 59.1
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 2.2e-242 842.8 918 54.8
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.9e-242 841.6 832 57.6
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 7.1e-241 837.8 925 53.7
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.6e-240 836.6 773 60.3
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 6.2e-237 824.7 822 57.5
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 3.4e-235 818.9 836 55.3
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 6.4e-234 814.7 924 53.4
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 8.4e-234 814.3 814 57.1
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 7.8e-232 807.7 829 55.1
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 2.0e-227 793.1 927 51.8
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.1e-225 787.3 691 64.1
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 2.4e-225 786.2 912 53.5
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 3.2e-225 785.8 915 53.2
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 3.2e-225 785.8 825 54.7
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 3.5e-224 782.3 816 56.7
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 5.6e-222 775.0 919 53.2
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 9.6e-222 774.2 928 52.6
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 9.9e-219 764.2 537 74.3
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.3e-218 763.8 824 54.7
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.7e-218 763.5 785 56.4
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 9.3e-217 757.7 817 54.5
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.9e-214 750.0 816 53.3
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 5.6e-214 748.4 553 71.1
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 6.2e-213 745.0 1053 46.1
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.7e-210 736.9 820 53.4
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 4.6e-208 728.8 467 79.9
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.9e-206 723.4 825 51.3
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 9.6e-206 721.1 759 55.2
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.5e-203 713.8 807 53.8
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 2.0e-203 713.4 905 48.8
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 2.0e-203 713.4 801 51.4
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 2.2e-202 709.9 905 48.8
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.8e-199 700.3 819 50.2
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 1.1e-196 691.0 841 50.8
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 4.1e-196 689.1 355 94.9
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.2e-195 687.6 817 50.7
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 2.0e-195 686.8 833 49.8
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.3e-189 667.5 460 78.7
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 4.8e-189 665.6 811 50.7
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 9.1e-188 661.4 817 50.8
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 8.5e-186 654.8 355 91.3
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.3e-182 642.9 664 56.6
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.3e-178 630.9 1088 40.7
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.4e-175 620.9 414 74.6
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 6.7e-175 618.6 353 85.6
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.1e-174 617.8 350 91.7
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 8.0e-168 595.1 801 48.2
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 4.4e-166 589.3 342 84.8
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 2.9e-154 550.1 449 64.6
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 4.4e-150 536.2 361 74.2
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 9.2e-148 528.5 405 66.4
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 1.6e-147 527.7 383 70.2
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 1.5e-145 521.2 611 50.7
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 2.8e-144 516.9 343 74.1
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.8e-143 514.2 529 53.5
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 9.8e-142 508.4 412 65.8
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.2e-141 507.3 650 48.8
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 5.4e-140 502.7 417 63.8
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 8.6e-138 495.4 353 67.1
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 3.3e-137 493.4 469 59.3
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.4e-132 477.2 244 95.5
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 3.9e-130 469.9 416 58.7
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 6.6e-130 469.2 373 66.0
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 8.1e-128 462.2 319 73.4
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 2.2e-125 454.1 298 75.8
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.2e-124 450.3 421 55.1
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.7e-120 436.4 681 41.9
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 6.2e-120 436.0 455 53.8
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.8e-119 434.5 405 57.0
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 3.1e-119 433.7 278 78.4
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.7e-117 427.9 450 51.1
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.4e-111 407.5 420 51.4
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 7.8e-107 392.5 406 52.0
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 3.0e-106 390.6 479 48.4
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 3.6e-104 383.6 362 60.2
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 2.9e-101 374.0 465 49.5
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 1.6e-99 368.2 578 47.2
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 7.4e-97 359.4 484 50.2
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 8.1e-96 355.9 765 36.3
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 3.5e-91 340.5 318 55.7
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.1e-87 328.9 609 37.6
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.1e-84 316.2 185 84.3
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 2.3e-82 311.2 418 49.3
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 2.6e-78 297.7 326 46.6
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.4e-78 297.4 270 60.0
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.0e-77 295.8 475 44.6
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 8.8e-74 282.7 197 70.6
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.1e-67 261.5 183 69.9
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 4.1e-63 247.3 469 40.1
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 7.7e-62 243.0 351 38.7
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 1.9e-60 238.4 310 41.0
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 2.3e-58 231.5 182 66.5
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 8.2e-56 223.0 185 63.8
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.4e-55 222.2 152 73.0
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.4e-50 205.7 458 33.6
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 7.7e-46 189.9 148 64.2
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.9e-45 188.0 101 91.1
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.9e-44 185.3 324 35.8
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 5.7e-41 173.7 220 48.2
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 4.0e-34 151.0 85 83.5
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.1e-23 116.3 65 86.2
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 3.2e-23 114.8 222 39.2
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 4.1e-23 114.4 63 85.7
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.1e-20 106.3 128 52.3
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 6.2e-19 100.5 65 73.8
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.8e-18 99.0 66 72.7
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.7e-16 92.4 58 69.0
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.3e-12 77.8 54 79.6
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 2.6e-09 68.6 59 57.6
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 9.9e-09 66.6 47 70.2
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 4.9e-08 64.3 35 74.3
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 6.4e-08 63.9 52 65.4
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 6.4e-08 63.9 80 50.0
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.9e-07 62.4 41 78.0


User provided reference genes

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