Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G047300 Populus trichocarpa HOM05D004758 ORTHO05D006063 1.9e-259 899.0 605 100.0
Potri.013G079600 Populus trichocarpa HOM05D004758 ORTHO05D006063 8.2e-218 760.8 593 89.5
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 1.6e-205 719.9 675 67.4
GSVIVG01024351001 Vitis vinifera HOM05D004758 ORTHO05D006063 8.0e-181 637.9 604 79.5
Manes.09G127900 Manihot esculenta HOM05D004758 ORTHO05D006063 1.0e-180 637.5 604 78.5
TAR375G0794 Trochodendron aralioides HOM05D004758 ORTHO05D006063 3.1e-177 625.9 602 77.2
Dinv29141 Davidia involucrata HOM05D004758 ORTHO05D006063 9.2e-177 624.4 595 78.3
QL09p022998 Quercus lobata HOM05D004758 ORTHO05D006063 1.2e-176 624.0 603 77.3
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 1.6e-176 623.6 600 76.5
TWI09G0087 Tripterygium wilfordii HOM05D004758 ORTHO05D006063 6.6e-175 618.2 603 77.4
Thecc.05G217400 Theobroma cacao HOM05D004758 ORTHO05D006063 2.8e-173 612.8 605 75.5
Ciclev10018804m.g Citrus clementina HOM05D004758 ORTHO05D006063 2.6e-171 606.3 605 74.7
Nn1g00147 Nelumbo nucifera HOM05D004758 ORTHO05D006063 1.1e-169 600.9 544 80.0
Hma1.2p1_0419F.1_g149420 Hydrangea macrophylla HOM05D004758 ORTHO05D006063 2.4e-169 599.7 589 76.7
MELO3C002835.2 Cucumis melo HOM05D004758 ORTHO05D006063 5.9e-168 595.1 592 73.6
CiPaw.05G215200 Carya illinoinensis HOM05D004758 ORTHO05D006063 3.9e-167 592.4 597 75.7
Phvul.003G200800 Phaseolus vulgaris HOM05D004758 ORTHO05D006063 1.5e-166 590.5 603 73.3
VMungo1215G2684 Vigna mungo HOM05D004758 ORTHO05D006063 1.9e-166 590.1 599 73.8
Lj4g0021664 Lotus japonicus HOM05D004758 ORTHO05D006063 3.3e-166 589.3 592 74.5
CsaV3_1G037130 Cucumis sativus L. HOM05D004758 ORTHO05D006063 4.3e-166 589.0 592 73.1
MD07G1309100 Malus domestica HOM05D004758 ORTHO05D006063 5.6e-166 588.6 588 74.1
Gohir.D13G161600 Gossypium hirsutum HOM05D004758 ORTHO05D006063 9.5e-166 587.8 601 73.2
Lalb_Chr13g0297781 Lupinus albus HOM05D004758 ORTHO05D006063 2.1e-165 586.6 593 73.5
ClCG09G017100 Citrullus lanatus HOM05D004758 ORTHO05D006063 1.4e-164 583.9 601 73.5
MBI04_g20348_MAGBIO Magnolia biondii HOM05D004758 ORTHO05D006063 5.2e-164 582.0 605 74.7
Sed0006906 Sechium edule HOM05D004758 ORTHO05D006063 5.2e-164 582.0 604 73.2
Lalb_Chr12g0201611 Lupinus albus HOM05D004758 ORTHO05D006063 6.8e-164 581.6 602 72.4
arahy.Tifrunner.gnm1.ann1.MVA0XP Arachis hypogaea HOM05D004758 ORTHO05D006063 1.5e-163 580.5 600 73.3
Prupe.2G326400 Prunus persica HOM05D004758 ORTHO05D006063 3.4e-163 579.3 592 72.8
Medtr4g105700 Medicago truncatula HOM05D004758 ORTHO05D006063 9.8e-163 577.8 621 72.9
Psat4g058120 Pisum sativum HOM05D004758 ORTHO05D006063 2.2e-162 576.6 624 72.4
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 4.9e-162 575.5 590 72.7
Gorai.013G183600 Gossypium raimondii HOM05D004758 ORTHO05D006063 8.3e-162 574.7 571 74.6
Lj3C885T17 Lonicera japonica HOM05D004758 ORTHO05D006063 1.1e-161 574.3 586 76.3
CSS0042937 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 1.9e-161 573.5 565 76.8
RcHm_v2.0_Chr1g0384251 Rosa chinensis HOM05D004758 ORTHO05D006063 2.7e-160 569.7 591 72.4
Peaxi162Scf00516g00672 Petunia axillaris HOM05D004758 ORTHO05D006063 3.5e-160 569.3 587 73.8
MD01G1236400 Malus domestica HOM05D004758 ORTHO05D006063 4.6e-160 568.9 590 73.1
Atru.chr10.1077 Acer truncatum HOM05D004758 ORTHO05D006063 7.8e-160 568.2 566 76.5
CANSAT21G1832 Cannabis sativa HOM05D004758 ORTHO05D006063 3.0e-159 566.2 591 75.5
Oeu038086.1 Olea europaea HOM05D004758 ORTHO05D006063 3.9e-159 565.8 595 73.4
Aqoxy3G02274 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 1.9e-158 563.5 599 69.9
TPR.G37444 Trifolium pratense HOM05D004758 ORTHO05D006063 1.9e-158 563.5 626 71.4
Gohir.A13G156800 Gossypium hirsutum HOM05D004758 ORTHO05D006063 2.5e-158 563.1 570 73.9
MSTRG.26923 Avicennia marina HOM05D004758 ORTHO05D006063 4.3e-158 562.4 591 74.6
Cc08_g01720 Coffea canephora HOM05D004758 ORTHO05D006063 4.7e-157 558.9 596 71.8
Hund26668 Selenicereus undatus HOM05D004758 ORTHO05D006063 6.2e-157 558.5 539 77.7
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 1.4e-156 557.4 567 70.2
THA.LOC104827198 Tarenaya hassleriana HOM05D004758 ORTHO05D006063 4.0e-156 555.8 600 72.7
FAN01G1935 Fragaria x ananassa HOM05D004758 ORTHO05D006063 5.2e-156 555.4 567 73.4
Carub.0006s1497 Capsella rubella HOM05D004758 ORTHO05D006063 1.2e-155 554.3 577 71.9
CDE06G0148 Ceratophyllum demersum HOM05D004758 ORTHO05D006063 1.2e-155 554.3 599 71.8
Aqoxy5G01707 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 1.3e-154 550.8 598 69.1
Cfa016059 Carpinus fangiana HOM05D004758 ORTHO05D006063 2.9e-154 549.7 600 72.8
A10p22470 Brassica napus HOM05D004758 ORTHO05D006063 3.7e-154 549.3 580 71.7
BraA10t44306Z Brassica rapa HOM05D004758 ORTHO05D006063 3.7e-154 549.3 580 71.7
Nitab4.5_0004530g0070 Nicotiana tabacum HOM05D004758 ORTHO05D006063 6.4e-154 548.5 587 71.2
C09p60320 Brassica napus HOM05D004758 ORTHO05D006063 1.4e-153 547.4 580 71.4
SGA_v2.0_scaffold18G08524 Striga asiatica HOM05D004758 ORTHO05D006063 1.9e-153 547.0 579 72.4
PSO063G1271 Papaver somniferum HOM05D004758 ORTHO05D006063 3.2e-153 546.2 592 71.1
AL6G27760 Arabidopsis lyrata HOM05D004758 ORTHO05D006063 4.1e-153 545.8 580 71.6
BolC9t58865H Brassica oleracea HOM05D004758 ORTHO05D006063 4.1e-153 545.8 577 71.6
BcaC04g18853 Brassica carinata HOM05D004758 ORTHO05D006063 9.2e-153 544.7 580 71.4
COL.COLO4_37813 Corchorus olitorius HOM05D004758 ORTHO05D006063 9.2e-153 544.7 627 69.2
C02p08570 Brassica napus HOM05D004758 ORTHO05D006063 2.1e-152 543.5 577 71.8
AT5G16750 Arabidopsis thaliana HOM05D004758 ORTHO05D006063 4.6e-152 542.3 577 71.8
arahy.Tifrunner.gnm1.ann1.64XA74 Arachis hypogaea HOM05D004758 ORTHO05D006063 1.0e-151 541.2 598 71.1
HanXRQChr04g0115571 Helianthus annuus HOM05D004758 ORTHO05D006063 1.0e-151 541.2 585 69.6
PSO782G4173 Papaver somniferum HOM05D004758 ORTHO05D006063 1.3e-151 540.8 587 71.7
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 1.7e-151 540.4 581 70.7
AUR62034925 Chenopodium quinoa HOM05D004758 ORTHO05D006063 2.3e-151 540.0 605 56.7
Sp6g27370 Schrenkiella parvula HOM05D004758 ORTHO05D006063 2.3e-151 540.0 579 70.3
BcaC03g18514 Brassica carinata HOM05D004758 ORTHO05D006063 2.5e-150 536.6 580 70.2
Aa31LG11G12880 Aethionema arabicum HOM05D004758 ORTHO05D006063 4.3e-150 535.8 562 72.1
BolC2t06772H Brassica oleracea HOM05D004758 ORTHO05D006063 1.2e-149 534.3 535 74.2
A02p03760 Brassica napus HOM05D004758 ORTHO05D006063 2.1e-149 533.5 550 73.5
BraA02t05341Z Brassica rapa HOM05D004758 ORTHO05D006063 2.1e-149 533.5 550 73.5
AUR62026609 Chenopodium quinoa HOM05D004758 ORTHO05D006063 2.8e-149 533.1 575 58.1
CAN.G1131.26 Capsicum annuum HOM05D004758 ORTHO05D006063 1.4e-148 530.8 540 76.1
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 1.4e-148 530.8 577 70.4
BcaC03g18515 Brassica carinata HOM05D004758 ORTHO05D006063 2.6e-147 526.6 535 73.6
Migut.F00084 Erythranthe guttata HOM05D004758 ORTHO05D006063 5.8e-147 525.4 549 72.9
Sc02g0003740 Simmondsia chinensis HOM05D004758 ORTHO05D006063 1.7e-146 523.9 604 69.4
ECA236G2519 Erigeron canadensis HOM05D004758 ORTHO05D006063 2.9e-146 523.1 585 71.1
COL.COLO4_14499 Corchorus olitorius HOM05D004758 ORTHO05D006063 6.4e-146 521.9 598 65.7
Lsat_1_v5_gn_7_26400 Lactuca sativa HOM05D004758 ORTHO05D006063 1.9e-145 520.4 533 73.9
DCAR_014578 Daucus carota HOM05D004758 ORTHO05D006063 3.5e-144 516.2 647 67.2
HPP92_020800 Vanilla planifolia HOM05D004758 ORTHO05D006063 7.8e-144 515.0 589 68.4
Zm00001eb072270 Zea mays HOM05D004758 ORTHO05D006063 7.8e-144 515.0 587 68.3
Ah.05g168380 Amaranthus hybridus HOM05D004758 ORTHO05D006063 1.5e-142 510.8 607 59.6
Haze_00389 Corylus avellana HOM05D004758 ORTHO05D006063 1.9e-142 510.4 693 46.8
unitig_748.g6995 Utricularia gibba HOM05D004758 ORTHO05D006063 2.5e-142 510.0 585 68.0
Os04g0592700 Oryza sativa ssp. japonica HOM05D004758 ORTHO05D006063 8.1e-141 505.0 598 69.2
Solyc03g097160.4 Solanum lycopersicum HOM05D004758 ORTHO05D006063 1.4e-140 504.2 587 68.7
ATR0829G002 Amborella trichopoda HOM05D004758 ORTHO05D006063 1.8e-140 503.8 526 74.5
Sopen03g027900 Solanum pennellii HOM05D004758 ORTHO05D006063 1.8e-140 503.8 540 72.0
FAN03G1445 Fragaria x ananassa HOM05D004758 ORTHO05D006063 3.1e-140 503.1 568 70.8
EL10Ac1g01635 Beta vulgaris HOM05D004758 ORTHO05D006063 4.9e-138 495.7 539 55.3
vmacro06528 Vaccinium macrocarpon HOM05D004758 ORTHO05D006063 8.4e-138 495.0 601 68.2
SalBow4G2121 Salvia bowleyana HOM05D004758 ORTHO05D006063 3.5e-136 489.6 592 60.3
SalBow4G2875 Salvia bowleyana HOM05D004758 ORTHO05D006063 3.5e-136 489.6 592 60.3
Nitab4.5_0000108g0370 Nicotiana tabacum HOM05D004758 ORTHO05D006063 2.5e-134 483.4 588 64.1
Ca_21920_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 3.3e-134 483.0 482 79.5
Nitab4.5_0000021g0710 Nicotiana tabacum HOM05D004758 ORTHO05D006063 4.2e-121 439.5 591 64.3
Glyma.17G089100 Glycine max HOM05D004758 ORTHO05D006063 3.4e-115 419.9 424 81.1
CSS0032843 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 3.3e-110 403.3 432 60.0
Mapoly0155s0010 Marchantia polymorpha HOM05D004758 ORTHO05D006063 2.2e-106 390.6 566 60.2
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 1.9e-105 387.5 540 60.6
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 2.2e-101 374.0 529 60.9
Eucgr.K00076 Eucalyptus grandis HOM05D004758 ORTHO05D006063 1.4e-100 371.3 251 75.3
Glyma.05G038000 Glycine max HOM05D004758 ORTHO05D006063 2.0e-99 367.5 251 73.3
Zm00001eb429930 Zea mays HOM05D004758 ORTHO05D006063 9.4e-89 332.0 252 64.7
Aa31LG11G12810 Aethionema arabicum HOM05D004758 ORTHO05D006063 1.4e-71 275.0 260 55.0
CBR_g29896 Chara braunii HOM05D004758 ORTHO05D006063 1.4e-68 265.0 572 34.3
Cpa.g.sc43.121 Carica papaya HOM05D004758 ORTHO05D006063 3.1e-68 263.8 177 75.1
SEGI_23303 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 1.6e-64 251.5 339 74.6
Eucgr.K00075 Eucalyptus grandis HOM05D004758 ORTHO05D006063 4.4e-62 243.4 225 60.0
SEGI_30407 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 1.0e-55 222.2 177 61.6
Cre07.g344050 Chlamydomonas reinhardtii HOM05D004758 ORTHO05D006063 1.7e-53 214.9 555 44.1
FAN06G1039 Fragaria x ananassa HOM05D004758 ORTHO05D006063 6.4e-53 213.0 184 57.6
PGSC0003DMG400013158 Solanum tuberosum HOM05D004758 ORTHO05D006063 1.2e-46 192.2 381 35.2
HanXRQChr15g0491711 Helianthus annuus HOM05D004758 ORTHO05D006063 1.5e-46 191.8 171 60.2
Cpa.g.sc43.118 Carica papaya HOM05D004758 ORTHO05D006063 8.6e-42 176.0 117 73.5
HanXRQChr12g0362941 Helianthus annuus HOM05D004758 ORTHO05D006063 6.2e-40 169.9 396 31.3
ECA236G3818 Erigeron canadensis HOM05D004758 ORTHO05D006063 8.9e-39 166.0 252 40.9
Zm00001eb153310 Zea mays HOM05D004758 ORTHO05D006063 3.4e-38 164.1 128 63.3
PRCOL_00002697 Prasinoderma coloniale HOM05D004758 ORTHO05D006063 3.3e-33 147.5 539 40.4
FAN01G1276 Fragaria x ananassa HOM05D004758 ORTHO05D006063 8.1e-32 142.9 103 66.0
MCO16G091 Micromonas commoda HOM05D004758 ORTHO05D006063 1.2e-30 139.0 572 38.1
AUR62013587 Chenopodium quinoa HOM05D004758 ORTHO05D006063 2.2e-29 134.8 96 69.8
PGSC0003DMG401003900 Solanum tuberosum HOM05D004758 ORTHO05D006063 5.1e-26 123.6 93 65.6
Cfa027159 Carpinus fangiana HOM05D004758 ORTHO05D006063 6.6e-26 123.2 551 22.7
FAN01G2473 Fragaria x ananassa HOM05D004758 ORTHO05D006063 3.6e-24 117.5 84 59.5
Lj3A886T35 Lonicera japonica HOM05D004758 ORTHO05D006063 2.5e-17 94.7 61 70.5
HanXRQChr15g0491701 Helianthus annuus HOM05D004758 ORTHO05D006063 2.8e-16 91.3 55 72.7
Aa31sc12G110 Aethionema arabicum HOM05D004758 ORTHO05D006063 3.6e-16 90.9 93 55.9
Ca_21928_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 3.6e-16 90.9 93 58.1
HPP92_020701 Vanilla planifolia HOM05D004758 ORTHO05D006063 1.5e-14 85.5 57 68.4
Cpa.g.sc43.119 Carica papaya HOM05D004758 ORTHO05D006063 7.9e-11 73.2 44 75.0
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 6.7e-10 70.1 43 76.7
Actinidia34322 Actinidia chinensis HOM05D004758 ORTHO05D006063 5.6e-09 67.0 44 70.5
MELO3C034796.2 Cucumis melo HOM05D009856 ORTHO05D168594 1.6e-08 65.5 57 57.9
Psat0s3292g0040 Pisum sativum HOM05D000344 ORTHO05D001967 2.4e-07 61.6 41 65.9


User provided reference genes

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