Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1618.6 811 100.0
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1567.7 811 96.8
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1339.7 811 84.7
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 0.0e+00 1308.1 828 81.8
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 0.0e+00 1187.2 817 74.9
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 0.0e+00 1135.6 820 73.0
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1134.4 627 92.3
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 0.0e+00 1131.7 809 72.1
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 0.0e+00 1109.0 821 72.0
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 0.0e+00 1106.7 822 71.9
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 0.0e+00 1104.4 820 72.2
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 0.0e+00 1098.2 809 70.5
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 0.0e+00 1097.0 815 72.1
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 0.0e+00 1088.2 812 70.7
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 0.0e+00 1085.1 810 70.7
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 0.0e+00 1078.2 809 70.1
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 0.0e+00 1076.6 820 70.4
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 7.9e-309 1063.5 815 69.3
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 3.0e-308 1061.6 819 67.9
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 9.7e-307 1056.6 809 68.5
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 2.4e-305 1052.0 826 67.1
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.2e-304 1049.7 820 69.4
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 2.0e-304 1048.9 810 67.9
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.7e-304 1047.0 809 68.2
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.2e-303 1045.4 826 66.5
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 1.8e-300 1035.8 811 66.5
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 6.7e-300 1033.9 804 67.9
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 5.3e-297 1024.2 815 66.7
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 5.3e-297 1024.2 814 65.6
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 6.9e-297 1023.8 815 66.7
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.2e-295 1018.8 805 67.0
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 6.5e-295 1017.3 858 64.7
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.1e-294 1016.5 826 65.9
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 2.5e-294 1015.4 814 66.2
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 4.2e-294 1014.6 720 73.8
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 3.0e-292 1008.4 790 69.1
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 1.3e-290 1003.0 816 65.8
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 8.2e-290 1000.3 809 65.9
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 5.5e-286 987.6 836 64.0
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 3.0e-284 981.9 725 71.2
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 8.8e-284 980.3 849 62.9
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 8.8e-284 980.3 817 65.0
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 5.0e-279 964.5 814 63.4
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 3.6e-277 958.4 817 63.4
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 4.7e-277 958.0 817 63.3
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 5.2e-276 954.5 814 62.5
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.7e-274 949.5 834 60.9
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 9.1e-273 943.7 814 63.9
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 6.8e-268 927.5 831 62.2
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.2e-267 926.8 824 60.9
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.2e-267 926.8 863 59.6
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 2.2e-266 922.5 815 62.6
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.4e-265 919.8 824 60.6
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 4.1e-265 918.3 834 60.3
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 5.6e-262 907.9 872 57.3
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.2e-261 906.7 830 60.8
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 3.0e-260 902.1 831 60.8
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 4.9e-258 894.8 875 57.9
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 8.3e-258 894.0 822 60.3
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.4e-252 876.7 922 55.6
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 2.3e-252 875.9 845 57.5
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 3.4e-251 872.1 821 59.6
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 7.5e-251 870.9 815 59.1
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 9.8e-251 870.5 923 55.7
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 8.3e-250 867.5 843 58.4
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 1.6e-248 863.2 918 55.4
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.6e-248 863.2 980 53.4
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.7e-247 859.8 832 58.2
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 3.3e-246 855.5 925 54.4
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.1e-244 850.5 811 59.2
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 8.9e-244 847.4 805 58.5
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 3.2e-241 839.0 773 60.2
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 2.3e-239 832.8 822 57.7
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 1.5e-238 830.1 836 55.9
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 1.4e-236 823.5 924 53.5
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 4.9e-234 815.1 814 56.9
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.9e-233 813.1 829 54.9
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 3.5e-232 808.9 927 52.3
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.6e-229 800.0 824 55.5
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 8.1e-229 797.7 669 65.9
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.1e-228 797.3 908 54.0
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.8e-228 796.6 816 57.1
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 4.0e-228 795.4 911 53.6
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 1.2e-224 783.9 924 52.9
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 1.6e-224 783.5 915 53.4
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 9.6e-222 774.2 537 74.9
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.6e-219 766.1 824 54.5
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 7.6e-219 764.6 786 56.1
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 2.2e-218 763.1 817 54.7
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 1.3e-215 753.8 553 70.9
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 7.4e-214 748.0 1051 45.8
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.8e-213 745.3 816 52.9
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 6.9e-212 741.5 820 53.2
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 9.9e-211 737.6 824 52.2
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 3.2e-209 732.6 759 55.6
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.3e-207 727.2 467 79.2
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 8.7e-207 724.5 904 48.7
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 9.6e-206 721.1 904 48.7
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.4e-204 716.5 807 53.5
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 9.0e-204 714.5 801 51.6
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 6.5e-202 708.4 819 50.7
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 1.6e-197 693.7 833 50.1
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 2.2e-197 693.3 845 50.5
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 3.1e-196 689.5 355 94.4
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 3.1e-196 689.5 817 50.8
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 3.8e-194 682.6 460 79.8
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 5.7e-190 668.7 817 51.0
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 7.7e-187 658.3 811 49.9
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 1.3e-186 657.5 355 91.0
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 9.4e-185 651.4 1088 41.4
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.9e-183 646.0 664 56.5
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.5e-179 632.5 350 93.1
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 7.2e-177 625.2 414 74.6
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 1.0e-175 621.3 364 83.2
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 3.1e-172 609.8 801 48.4
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 8.8e-167 591.7 342 84.5
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.3e-154 551.2 449 64.4
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 8.9e-151 538.5 361 73.7
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 3.7e-149 533.1 383 70.2
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 5.4e-148 529.3 405 65.9
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 5.0e-146 522.7 611 50.6
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 7.3e-145 518.8 529 54.1
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 2.1e-144 517.3 343 73.5
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.0e-143 515.0 412 66.3
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 2.4e-140 503.8 385 66.8
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.4e-140 503.8 650 48.5
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.0e-138 498.4 353 67.1
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.2e-136 491.5 469 59.1
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.4e-134 483.4 244 96.7
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 1.3e-130 471.5 416 58.7
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 1.7e-130 471.1 373 65.4
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.4e-127 461.5 319 72.4
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 7.5e-126 455.7 298 75.2
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.1e-124 451.8 421 54.9
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 1.4e-119 434.9 455 53.6
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.8e-119 434.5 278 77.7
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.0e-118 431.0 681 41.6
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 5.8e-118 429.5 450 51.1
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.3e-117 428.3 470 51.9
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 5.6e-113 412.9 420 52.1
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 4.6e-107 393.3 406 52.0
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 1.0e-106 392.1 479 48.9
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 1.1e-105 388.7 362 60.5
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 4.5e-102 376.7 465 49.7
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 3.2e-100 370.5 578 47.4
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 5.1e-98 363.2 486 50.4
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 2.1e-96 357.8 760 36.3
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 9.3e-92 342.4 318 55.7
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.5e-89 335.1 609 37.9
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.5e-84 316.6 185 83.8
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 2.5e-81 307.8 418 48.8
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.1e-79 300.8 475 45.3
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.0e-77 295.8 270 59.6
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.3e-77 295.4 326 45.7
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 5.1e-74 283.5 197 70.1
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.2e-67 262.3 183 71.0
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.3e-61 242.3 469 39.2
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 2.9e-61 241.1 382 36.6
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 3.2e-60 237.7 310 41.0
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 1.4e-58 232.3 182 67.0
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.4e-55 222.2 185 62.7
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 4.1e-55 220.7 152 72.4
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 6.8e-50 203.4 363 36.9
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.3e-45 189.1 101 90.1
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 3.8e-45 187.6 148 62.8
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 3.8e-45 187.6 324 35.5
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 5.7e-41 173.7 220 48.2
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 1.4e-34 152.5 85 82.4
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 1.3e-24 119.4 222 39.6
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 8.3e-24 116.7 65 86.2
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 2.4e-23 115.2 63 87.3
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.5e-20 105.1 128 51.6
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 1.6e-19 102.4 65 75.4
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.6e-19 101.3 66 72.7
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 5.8e-17 94.0 58 70.7
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.6e-11 75.9 39 92.3
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 2.3e-10 72.0 59 61.0
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 1.7e-08 65.9 35 77.1
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.7e-08 65.9 47 68.1
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 2.9e-08 65.1 80 51.2
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 4.9e-08 64.3 52 63.5
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.9e-07 62.4 41 78.0
Cfa001622 Carpinus fangiana HOM05D003684 ORTHO05D125656 2.1e-06 58.9 154 26.6


User provided reference genes

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