Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 8.7e-142 506.9 247 100.0
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.5e-135 485.0 244 96.7
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.9e-133 479.2 244 95.5
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.3e-133 478.0 232 99.6
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-124 449.9 244 90.6
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 6.5e-121 437.6 245 88.6
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 7.4e-117 424.1 241 87.6
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 9.7e-117 423.7 240 87.1
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 9.7e-117 423.7 241 86.7
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.7e-116 422.9 241 86.3
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 8.2e-116 420.6 241 86.3
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 4.1e-115 418.3 241 85.9
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 5.9e-114 414.5 261 80.8
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 6.5e-113 411.0 241 84.6
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 1.1e-112 410.2 241 83.0
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.4e-112 409.8 242 84.3
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.9e-112 409.5 241 84.2
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 2.5e-112 409.1 241 84.2
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 3.2e-112 408.7 241 83.8
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.2e-112 407.5 241 83.0
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 2.1e-111 406.0 241 84.6
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 2.7e-111 405.6 241 83.8
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.0e-110 403.7 239 83.3
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 2.3e-110 402.5 241 83.8
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 2.6e-109 399.1 241 79.3
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 9.7e-109 397.1 241 83.0
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.8e-108 395.6 246 80.9
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 3.7e-108 395.2 241 82.6
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 6.3e-108 394.4 241 80.9
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.0e-107 391.0 241 80.5
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 7.0e-107 391.0 241 80.9
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 1.0e-105 387.1 241 79.7
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 2.2e-105 386.0 243 79.0
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 3.8e-105 385.2 241 79.3
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 3.8e-105 385.2 243 79.0
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 6.5e-105 384.4 246 79.3
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.5e-104 383.3 241 77.2
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 9.4e-104 380.6 241 77.2
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 9.4e-104 380.6 244 81.1
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 1.2e-103 380.2 243 79.0
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 6.1e-103 377.9 257 75.9
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.0e-102 377.1 241 78.0
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.0e-102 377.1 245 79.2
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.0e-102 377.1 241 75.5
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.4e-102 376.7 244 77.5
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.8e-102 376.3 241 77.6
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 3.0e-102 375.6 245 74.7
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 3.0e-102 375.6 258 75.2
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 8.8e-102 374.0 245 78.4
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 8.8e-102 374.0 244 78.3
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 1.1e-101 373.6 241 76.8
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.1e-101 373.6 241 77.2
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.1e-101 373.6 241 78.0
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 2.0e-101 372.9 241 76.3
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 2.0e-101 372.9 245 78.8
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 2.0e-101 372.9 241 76.8
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 3.3e-101 372.1 243 77.0
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 3.3e-101 372.1 241 77.6
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 3.3e-101 372.1 255 75.3
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 4.4e-101 371.7 241 75.9
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 4.4e-101 371.7 241 77.6
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.7e-101 371.3 241 77.6
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 5.7e-101 371.3 243 77.8
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 5.7e-101 371.3 245 77.1
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 9.7e-101 370.5 257 73.9
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 9.7e-101 370.5 251 75.7
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.3e-100 370.2 241 76.3
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.4e-99 366.7 245 75.5
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 2.4e-99 365.9 236 76.7
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 2.4e-99 365.9 245 75.5
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 3.1e-99 365.5 245 75.5
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 4.1e-99 365.2 242 75.6
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 4.1e-99 365.2 240 77.1
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 2.0e-98 362.8 241 75.5
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 3.5e-98 362.1 241 75.9
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.5e-98 361.7 242 73.6
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 4.5e-98 361.7 241 75.5
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.0e-97 360.5 257 73.5
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 1.1e-96 357.1 249 72.3
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.1e-96 357.1 247 72.9
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 7.2e-96 354.4 232 76.3
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 1.2e-95 353.6 241 73.9
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.6e-95 353.2 241 73.9
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 2.1e-95 352.8 247 72.9
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 2.7e-95 352.4 239 73.6
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 3.6e-95 352.1 256 70.3
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 6.1e-95 351.3 241 75.9
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 8.0e-95 350.9 243 73.3
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 8.0e-95 350.9 183 94.5
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.0e-94 350.5 243 73.3
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 1.4e-94 350.1 247 73.7
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 1.8e-94 349.7 183 94.0
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 6.8e-94 347.8 241 71.8
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 2.6e-93 345.9 243 73.7
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 3.4e-93 345.5 290 63.4
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 7.5e-93 344.4 387 51.2
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 1.3e-92 343.6 242 71.9
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 1.7e-92 343.2 247 72.9
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 2.8e-92 342.4 241 71.8
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 7.0e-91 337.8 241 70.5
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 2.0e-90 336.3 376 51.6
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 1.1e-88 330.5 280 66.1
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.9e-88 329.7 220 75.5
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 5.5e-88 328.2 241 64.7
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.2e-88 327.8 240 65.0
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.2e-87 327.0 243 71.6
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.7e-87 325.9 241 71.8
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 3.6e-87 325.5 194 81.4
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 4.7e-87 325.1 245 69.4
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 4.0e-86 322.0 245 68.6
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 5.2e-86 321.6 268 64.9
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 9.1e-83 310.8 183 83.1
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.0e-82 309.7 168 89.3
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 1.1e-80 303.9 202 73.8
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 7.2e-80 301.2 241 67.2
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.2e-79 300.4 247 63.2
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 1.8e-75 286.6 182 75.8
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.8e-75 286.6 230 65.2
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 3.2e-75 285.8 182 75.8
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.2e-74 283.9 222 62.2
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 3.5e-74 282.3 182 75.3
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.5e-72 276.2 238 59.7
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 4.3e-72 275.4 168 78.6
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 3.6e-71 272.3 183 73.8
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.4e-70 270.4 241 58.1
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.8e-70 270.0 147 89.1
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 6.8e-70 268.1 248 56.5
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 6.8e-70 268.1 243 58.4
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.1e-67 260.8 169 71.6
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.2e-63 247.3 147 80.3
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 2.8e-63 246.1 148 79.7
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 2.8e-63 246.1 218 60.1
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.1e-62 244.2 218 56.9
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 5.4e-59 231.9 229 54.1
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 7.8e-58 228.0 247 52.6
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 3.9e-57 225.7 181 60.8
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.6e-55 220.3 182 63.2
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.5e-53 213.8 229 49.3
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.3e-52 210.7 121 86.0
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 7.1e-51 204.9 124 83.9
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.4e-46 190.7 102 90.2
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 7.1e-43 178.3 102 84.3
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 5.3e-38 162.2 160 59.4
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 1.1e-35 154.5 85 84.7
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 3.5e-34 149.4 125 56.0
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.4e-30 136.7 70 94.3
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 1.4e-27 127.5 183 38.8
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 5.5e-27 125.6 136 45.6
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 3.0e-25 119.8 222 40.1
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.6e-21 105.1 125 52.0
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 3.8e-20 102.8 59 84.7
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.9e-20 102.4 66 74.2
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 2.5e-19 100.1 65 72.3
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 4.2e-19 99.4 155 39.4
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 9.3e-19 98.2 183 36.6
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.8e-17 94.0 58 70.7
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 3.9e-17 92.8 71 67.6
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 6.7e-17 92.0 56 78.6
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 1.5e-16 90.9 56 75.0
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 3.1e-14 83.2 56 71.4
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 1.9e-11 73.9 56 66.1
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 7.2e-11 72.0 56 66.1
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.2e-10 71.2 43 79.1
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 2.1e-10 70.5 59 59.3
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 2.1e-10 70.5 40 85.0
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.3e-09 67.8 55 63.6
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.3e-09 67.0 47 70.2
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 6.7e-09 65.5 52 65.4
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 1.5e-08 64.3 35 74.3
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 7.4e-08 62.0 56 58.9
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.3e-07 61.2 38 78.9
Cfa001622 Carpinus fangiana HOM05D003684 ORTHO05D125656 8.2e-07 58.5 154 26.6


User provided reference genes

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