Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G138202 Populus trichocarpa HOM05D002718 ORTHO05D003269 7.2e-101 370.5 183 100.0
Potri.018G145700 Populus trichocarpa HOM05D002718 ORTHO05D003269 1.6e-87 326.2 187 89.3
Sabra18G0127600 Salix brachista HOM05D002718 ORTHO05D003269 5.5e-85 317.8 187 86.6
Sabra18G0120000 Salix brachista HOM05D002718 ORTHO05D003269 1.4e-83 313.2 187 85.0
ClCG10G008570 Citrullus lanatus HOM05D002718 ORTHO05D003269 1.0e-62 243.8 187 63.6
Sed0009215 Sechium edule HOM05D002718 ORTHO05D003269 1.7e-62 243.0 186 64.5
TAR383G0086 Trochodendron aralioides HOM05D002718 ORTHO05D003269 5.0e-62 241.5 187 65.2
Cc00_g00350 Coffea canephora HOM05D002718 ORTHO05D003269 6.6e-62 241.1 186 64.5
CsaV3_4G009070 Cucumis sativus L. HOM05D002718 ORTHO05D003269 1.1e-61 240.4 187 63.1
Hma1.2p1_0284F.1_g113850 Hydrangea macrophylla HOM05D002718 ORTHO05D003269 5.6e-61 238.0 187 66.3
Nitab4.5_0001535g0040 Nicotiana tabacum HOM05D002718 ORTHO05D003269 9.5e-61 237.3 186 64.0
Cpa.g.sc115.31 Carica papaya HOM05D002718 ORTHO05D003269 1.2e-60 236.9 187 65.2
GSVIVG01032250001 Vitis vinifera HOM05D002718 ORTHO05D003269 1.2e-60 236.9 187 65.8
Peaxi162Scf00320g00216 Petunia axillaris HOM05D002718 ORTHO05D003269 2.1e-60 236.1 186 64.0
Sopen00g003670 Solanum pennellii HOM05D002718 ORTHO05D003269 2.8e-60 235.7 186 62.4
Sopen07g005900 Solanum pennellii HOM05D002718 ORTHO05D003269 2.8e-60 235.7 186 62.4
MELO3C018969.2 Cucumis melo HOM05D002718 ORTHO05D003269 4.7e-60 235.0 187 61.5
PGSC0003DMG400009774 Solanum tuberosum HOM05D002718 ORTHO05D003269 4.7e-60 235.0 186 62.9
Solyc07g016170.4 Solanum lycopersicum HOM05D002718 ORTHO05D003269 1.4e-59 233.4 186 61.8
Aqoxy4G00376 Aquilegia oxysepala HOM05D002718 ORTHO05D003269 3.1e-59 232.3 185 63.8
CAN.G600.5 Capsicum annuum HOM05D002718 ORTHO05D003269 3.1e-59 232.3 186 62.9
PSO675G7617 Papaver somniferum HOM05D002718 ORTHO05D003269 5.2e-59 231.5 187 62.0
PGR084G0004 Punica granatum HOM05D002718 ORTHO05D003269 1.2e-58 230.3 187 59.4
PGR142G1783 Punica granatum HOM05D002718 ORTHO05D003269 1.2e-58 230.3 187 59.4
PGR142G2777 Punica granatum HOM05D002718 ORTHO05D003269 2.0e-58 229.6 187 61.0
Atru.chr7.2686 Acer truncatum HOM05D002718 ORTHO05D003269 2.6e-58 229.2 183 61.7
ATR0626G149 Amborella trichopoda HOM05D002718 ORTHO05D003269 2.6e-58 229.2 186 60.8
SalBow4G0158 Salvia bowleyana HOM05D002718 ORTHO05D003269 2.6e-58 229.2 187 60.4
Nitab4.5_0000970g0160 Nicotiana tabacum HOM05D002718 ORTHO05D003269 4.4e-58 228.4 184 63.6
CANSAT35G0611 Cannabis sativa HOM05D002718 ORTHO05D003269 7.5e-58 227.6 184 63.0
FAN20G1933 Fragaria x ananassa HOM05D002718 ORTHO05D003269 7.5e-58 227.6 187 60.4
CAN.G480.17 Capsicum annuum HOM05D002718 ORTHO05D003269 9.9e-58 227.3 181 64.6
Nitab4.5_0001942g0140 Nicotiana tabacum HOM05D002718 ORTHO05D003269 9.9e-58 227.3 184 63.0
CiPaw.08G021400 Carya illinoinensis HOM05D002718 ORTHO05D003269 1.3e-57 226.9 187 61.5
Dinv37495 Davidia involucrata HOM05D002718 ORTHO05D003269 1.3e-57 226.9 187 60.4
Oeu059291.2 Olea europaea HOM05D002718 ORTHO05D003269 1.3e-57 226.9 185 62.2
PSO170G4524 Papaver somniferum HOM05D002718 ORTHO05D003269 1.3e-57 226.9 187 59.9
FvH4_2g36460 Fragaria vesca HOM05D002718 ORTHO05D003269 2.9e-57 225.7 187 60.4
Oeu028830.2 Olea europaea HOM05D002718 ORTHO05D003269 2.9e-57 225.7 200 59.5
MD15G1103100 Malus domestica HOM05D002718 ORTHO05D003269 3.7e-57 225.3 187 59.4
Nitab4.5_0000899g0120 Nicotiana tabacum HOM05D002718 ORTHO05D003269 3.7e-57 225.3 186 61.8
CANSAT25G2302 Cannabis sativa HOM05D002718 ORTHO05D003269 4.9e-57 224.9 184 62.5
Prupe.1G456000 Prunus persica HOM05D002718 ORTHO05D003269 4.9e-57 224.9 187 60.4
MBI16_g37213_MAGBIO Magnolia biondii HOM05D002718 ORTHO05D003269 6.4e-57 224.6 186 59.1
SGA_v2.0_scaffold27G11655 Striga asiatica HOM05D002718 ORTHO05D003269 8.3e-57 224.2 185 61.6
THA.LOC104810997 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 8.3e-57 224.2 187 59.9
FAN27G0986 Fragaria x ananassa HOM05D002718 ORTHO05D003269 1.1e-56 223.8 191 59.2
QL12p025880 Quercus lobata HOM05D002718 ORTHO05D003269 1.1e-56 223.8 183 60.7
BcaB08g35974 Brassica carinata HOM05D002718 ORTHO05D003269 1.9e-56 223.0 187 58.8
Carub.0005s0889 Capsella rubella HOM05D002718 ORTHO05D003269 1.9e-56 223.0 186 60.2
CARHR222420 Cardamine hirsuta HOM05D002718 ORTHO05D003269 1.9e-56 223.0 187 60.4
Cc11_g03230 Coffea canephora HOM05D002718 ORTHO05D003269 1.9e-56 223.0 187 59.9
TWI32G0829 Tripterygium wilfordii HOM05D002718 ORTHO05D003269 1.9e-56 223.0 187 60.4
Ciclev10007339m.g Citrus clementina HOM05D002718 ORTHO05D003269 2.4e-56 222.6 185 59.5
Nn8g41097 Nelumbo nucifera HOM05D002718 ORTHO05D003269 2.4e-56 222.6 187 61.0
RcHm_v2.0_Chr6g0305421 Rosa chinensis HOM05D002718 ORTHO05D003269 2.4e-56 222.6 187 59.4
Sabra18G0002900 Salix brachista HOM05D002718 ORTHO05D003269 2.4e-56 222.6 187 58.3
Sabra18G0006300 Salix brachista HOM05D002718 ORTHO05D003269 2.4e-56 222.6 187 58.3
Solyc08g069231.1 Solanum lycopersicum HOM05D002718 ORTHO05D003269 3.2e-56 222.2 184 62.0
Sopen08g022860 Solanum pennellii HOM05D002718 ORTHO05D003269 3.2e-56 222.2 184 62.0
TPR.G12004 Trifolium pratense HOM05D002718 ORTHO05D003269 3.2e-56 222.2 187 58.8
Carub.0007s2548 Capsella rubella HOM05D002718 ORTHO05D003269 4.1e-56 221.9 187 59.4
Cfa013311 Carpinus fangiana HOM05D002718 ORTHO05D003269 5.4e-56 221.5 187 60.4
Potri.018G003100 Populus trichocarpa HOM05D002718 ORTHO05D003269 5.4e-56 221.5 187 58.3
Ca_12844_v3 Cicer arietinum L. HOM05D002718 ORTHO05D003269 7.1e-56 221.1 187 59.4
CsaV3_3G047280 Cucumis sativus L. HOM05D002718 ORTHO05D003269 7.1e-56 221.1 183 58.5
Manes.03G001300 Manihot esculenta HOM05D002718 ORTHO05D003269 7.1e-56 221.1 183 60.1
Thecc.09G002800 Theobroma cacao HOM05D002718 ORTHO05D003269 7.1e-56 221.1 187 59.4
ECA246G1707 Erigeron canadensis HOM05D002718 ORTHO05D003269 9.2e-56 220.7 187 59.9
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.6e-55 219.9 186 60.2
MELO3C003601.2 Cucumis melo HOM05D002718 ORTHO05D003269 1.6e-55 219.9 183 58.5
Os06g0702500 Oryza sativa ssp. japonica HOM05D002718 ORTHO05D003269 1.6e-55 219.9 183 59.6
AL5G21150 Arabidopsis lyrata HOM05D002718 ORTHO05D003269 2.1e-55 219.5 186 59.7
Eucgr.C02132 Eucalyptus grandis HOM05D002718 ORTHO05D003269 2.1e-55 219.5 188 57.4
Gohir.A06G107500 Gossypium hirsutum HOM05D002718 ORTHO05D003269 2.1e-55 219.5 187 58.3
Gohir.D06G109800 Gossypium hirsutum HOM05D002718 ORTHO05D003269 2.1e-55 219.5 187 58.3
Gorai.010G124600 Gossypium raimondii HOM05D002718 ORTHO05D003269 2.1e-55 219.5 187 58.3
MD08G1124400 Malus domestica HOM05D002718 ORTHO05D003269 2.1e-55 219.5 187 58.3
Manes.16G137600 Manihot esculenta HOM05D002718 ORTHO05D003269 2.1e-55 219.5 183 60.1
Peaxi162Scf00213g00943 Petunia axillaris HOM05D002718 ORTHO05D003269 2.1e-55 219.5 184 60.9
MSTRG.10465 Avicennia marina HOM05D002718 ORTHO05D003269 2.7e-55 219.2 186 60.2
Os02g0141300 Oryza sativa ssp. japonica HOM05D002718 ORTHO05D003269 2.7e-55 219.2 186 59.1
THA.LOC104802597 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 3.5e-55 218.8 183 60.7
GSVIVG01035565001 Vitis vinifera HOM05D002718 ORTHO05D003269 3.5e-55 218.8 188 59.0
Sp7g14590 Schrenkiella parvula HOM05D002718 ORTHO05D003269 4.6e-55 218.4 187 59.4
AT3G42850 Arabidopsis thaliana HOM05D002718 ORTHO05D003269 6.0e-55 218.0 186 58.6
Duzib168G0110 Durio zibethinus HOM05D002718 ORTHO05D003269 6.0e-55 218.0 187 58.8
CiPaw.07G209700 Carya illinoinensis HOM05D002718 ORTHO05D003269 7.8e-55 217.6 184 58.7
Dinv38809 Davidia involucrata HOM05D002718 ORTHO05D003269 7.8e-55 217.6 187 59.4
AT4G16130 Arabidopsis thaliana HOM05D002718 ORTHO05D003269 1.0e-54 217.2 187 58.8
MSTRG.11818 Avicennia marina HOM05D002718 ORTHO05D003269 1.0e-54 217.2 187 60.4
BcaC04g20159 Brassica carinata HOM05D002718 ORTHO05D003269 1.0e-54 217.2 186 59.1
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.0e-54 217.2 181 60.8
COL.COLO4_18626 Corchorus olitorius HOM05D002718 ORTHO05D003269 1.0e-54 217.2 188 59.0
Thhalv10024313m.g Eutrema salsugineum HOM05D002718 ORTHO05D003269 1.3e-54 216.9 187 58.8
Lalb_Chr08g0243461 Lupinus albus HOM05D002718 ORTHO05D003269 1.3e-54 216.9 187 59.9
unitig_748.g8176 Utricularia gibba HOM05D002718 ORTHO05D003269 1.3e-54 216.9 186 58.6
Psat6g034400 Pisum sativum HOM05D002718 ORTHO05D003269 1.7e-54 216.5 187 58.8
AL7G39040 Arabidopsis lyrata HOM05D002718 ORTHO05D003269 2.3e-54 216.1 187 59.4
Thhalv10012582m.g Eutrema salsugineum HOM05D002718 ORTHO05D003269 3.0e-54 215.7 186 58.6
Lsat_1_v5_gn_3_26460 Lactuca sativa HOM05D002718 ORTHO05D003269 3.0e-54 215.7 189 59.3
Sp6g17930 Schrenkiella parvula HOM05D002718 ORTHO05D003269 3.0e-54 215.7 186 58.1
THA.LOC104820278 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 3.0e-54 215.7 183 60.1
BolC9t57573H Brassica oleracea HOM05D002718 ORTHO05D003269 3.9e-54 215.3 187 59.9
HanXRQChr17g0539291 Helianthus annuus HOM05D002718 ORTHO05D003269 3.9e-54 215.3 187 58.8
BcaC09g50300 Brassica carinata HOM05D002718 ORTHO05D003269 5.1e-54 214.9 187 58.8
BcaNung00226 Brassica carinata HOM05D002718 ORTHO05D003269 5.1e-54 214.9 187 58.3
C01p26840 Brassica napus HOM05D002718 ORTHO05D003269 5.1e-54 214.9 187 58.8
Nn5g27632 Nelumbo nucifera HOM05D002718 ORTHO05D003269 5.1e-54 214.9 187 59.4
Psat0s2005g0040 Pisum sativum HOM05D002718 ORTHO05D003269 5.1e-54 214.9 187 58.3
A01p21500 Brassica napus HOM05D002718 ORTHO05D003269 6.6e-54 214.5 187 58.3
BraA01t02056Z Brassica rapa HOM05D002718 ORTHO05D003269 6.6e-54 214.5 187 58.3
Lj7C754T6 Lonicera japonica HOM05D002718 ORTHO05D003269 6.6e-54 214.5 187 58.8
CSS0012006 Camellia sinensis var. sinensis HOM05D002718 ORTHO05D003269 1.1e-53 213.8 187 57.2
Cpa.g.sc148.1 Carica papaya HOM05D002718 ORTHO05D003269 1.1e-53 213.8 187 57.2
PSO675G1851 Papaver somniferum HOM05D002718 ORTHO05D003269 1.1e-53 213.8 187 59.4
Glyma.14G138300 Glycine max HOM05D002718 ORTHO05D003269 1.5e-53 213.4 187 56.1
BolC1t02628H Brassica oleracea HOM05D002718 ORTHO05D003269 1.9e-53 213.0 187 58.3
Sabra18G0006600 Salix brachista HOM05D002718 ORTHO05D003269 1.9e-53 213.0 219 49.3
SHI02366 Sapria himalayana HOM05D002718 ORTHO05D003269 1.9e-53 213.0 187 56.1
Sc06g0001240 Simmondsia chinensis HOM05D002718 ORTHO05D003269 1.9e-53 213.0 189 58.7
CDE07G1244 Ceratophyllum demersum HOM05D002718 ORTHO05D003027 2.5e-53 212.6 184 59.2
Glyma.17G194400 Glycine max HOM05D002718 ORTHO05D003269 2.5e-53 212.6 187 56.1
Hund03264 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.5e-53 212.6 187 56.7
VMungo0647G1266 Vigna mungo HOM05D002718 ORTHO05D003269 2.5e-53 212.6 187 56.1
Aa31LG10G6050 Aethionema arabicum HOM05D002718 ORTHO05D003269 3.3e-53 212.2 187 58.8
BraA10t43426Z Brassica rapa HOM05D002718 ORTHO05D003269 3.3e-53 212.2 187 58.8
Actinidia25741 Actinidia chinensis HOM05D002718 ORTHO05D003269 4.3e-53 211.8 187 57.2
Lj3C988G10 Lonicera japonica HOM05D002718 ORTHO05D003269 4.3e-53 211.8 183 59.0
AUR62038736 Chenopodium quinoa HOM05D002718 ORTHO05D003269 7.3e-53 211.1 186 57.5
Lj5g0024079 Lotus japonicus HOM05D002718 ORTHO05D003269 1.2e-52 210.3 187 56.7
Phvul.001G077700 Phaseolus vulgaris HOM05D002718 ORTHO05D003269 1.2e-52 210.3 187 55.1
Lalb_Chr22g0361171 Lupinus albus HOM05D002718 ORTHO05D003269 2.1e-52 209.5 185 57.8
EL10Ac2g03697 Beta vulgaris HOM05D002718 ORTHO05D003269 2.8e-52 209.1 187 56.7
HPP92_017382 Vanilla planifolia HOM05D002718 ORTHO05D003269 2.8e-52 209.1 186 56.5
Zm00001eb227090 Zea mays HOM05D002718 ORTHO05D003269 3.6e-52 208.8 183 56.8
MSTRG.25768 Avicennia marina HOM05D002718 ORTHO05D003269 6.2e-52 208.0 187 56.1
C08p28790 Brassica napus HOM05D002718 ORTHO05D003269 6.2e-52 208.0 178 60.1
Rhsim04G0184400 Rhododendron simsii HOM05D002718 ORTHO05D003269 8.1e-52 207.6 187 55.6
SalBow5G2825 Salvia bowleyana HOM05D002718 ORTHO05D003269 8.1e-52 207.6 182 59.3
SalBow5G3535 Salvia bowleyana HOM05D002718 ORTHO05D003269 8.1e-52 207.6 182 59.3
unitig_32.g11648 Utricularia gibba HOM05D002718 ORTHO05D003269 1.1e-51 207.2 168 58.9
vmacro08496 Vaccinium macrocarpon HOM05D002718 ORTHO05D003269 1.4e-51 206.8 187 56.1
AUR62020642 Chenopodium quinoa HOM05D002718 ORTHO05D003269 1.8e-51 206.5 186 55.9
Medtr1g009190 Medicago truncatula HOM05D002718 ORTHO05D003269 5.2e-51 204.9 187 54.5
Sabra18G0009800 Salix brachista HOM05D002718 ORTHO05D003269 8.9e-51 204.1 235 46.4
Haze_21795 Corylus avellana HOM05D002718 ORTHO05D003269 1.5e-50 203.4 225 50.2
SEGI_37495 Sequoiadendron giganteum HOM05D002718 ORTHO05D003269 5.8e-50 201.4 188 54.8
C01p28220 Brassica napus HOM05D002718 ORTHO05D003269 1.7e-49 199.9 183 56.8
Ah.10g033820 Amaranthus hybridus HOM05D002718 ORTHO05D003269 1.9e-48 196.4 172 58.7
Lsat_1_v5_gn_5_56521 Lactuca sativa HOM05D002718 ORTHO05D003269 9.2e-48 194.1 186 53.2
DCAR_004565 Daucus carota HOM05D002718 ORTHO05D003269 1.2e-47 193.7 203 50.7
DCAR_000671 Daucus carota HOM05D002718 ORTHO05D003269 2.1e-47 193.0 186 54.3
SEGI_21242 Sequoiadendron giganteum HOM05D002718 ORTHO05D003269 1.9e-45 186.4 182 53.3
arahy.Tifrunner.gnm1.ann1.NA6C8E Arachis hypogaea HOM05D002718 ORTHO05D003269 2.4e-43 179.5 170 51.2
arahy.Tifrunner.gnm1.ann1.YWBJ1A Arachis hypogaea HOM05D002718 ORTHO05D003269 2.4e-43 179.5 170 51.2
AagrBONN_evm.TU.Sc2ySwM_117.407 Anthoceros agrestis HOM05D002718 ORTHO05D003269 4.9e-41 171.8 176 49.4
Pp3c6_8620 Physcomitrium patens HOM05D002718 ORTHO05D003269 1.2e-39 167.2 176 48.3
ClCG05G026320 Citrullus lanatus HOM05D002718 ORTHO05D003269 2.7e-39 166.0 171 51.5
Pp3c16_4920 Physcomitrium patens HOM05D002718 ORTHO05D003269 3.5e-39 165.6 184 45.7
Mapoly0043s0024 Marchantia polymorpha HOM05D002718 ORTHO05D003269 5.1e-38 161.8 181 47.0
SMO146G0086 Selaginella moellendorffii HOM05D002718 ORTHO05D003269 1.1e-37 160.6 186 48.9
Zm00001eb208110 Zea mays HOM05D002718 ORTHO05D003269 1.6e-36 156.8 104 66.3
CBR_g29486 Chara braunii HOM05D002718 ORTHO05D003269 8.1e-36 154.5 177 45.8
BcaB04g18358 Brassica carinata HOM05D002718 ORTHO05D003269 1.7e-33 146.7 110 62.7
Migut.A00453 Erythranthe guttata HOM05D002718 ORTHO05D003269 3.2e-32 142.5 125 60.0
PRCOL_00002758 Prasinoderma coloniale HOM05D002718 ORTHO05D003269 7.1e-32 141.4 191 45.5
CARHR153810 Cardamine hirsuta HOM05D002718 ORTHO05D003269 1.5e-29 133.7 123 58.5
Cre03.g185300 Chlamydomonas reinhardtii HOM05D002718 ORTHO05D003269 2.9e-25 119.4 178 38.2
QL12p025856 Quercus lobata HOM05D002718 ORTHO05D003269 6.7e-22 108.2 107 55.1
A08p12450 Brassica napus HOM05D002718 ORTHO05D021965 5.3e-19 98.6 104 55.8
BraA08t33211Z Brassica rapa HOM05D002718 ORTHO05D021965 5.3e-19 98.6 104 55.8
PGSC0003DMG401029558 Solanum tuberosum HOM05D002718 ORTHO05D003269 1.3e-17 94.0 57 80.7
BcaB04g18359 Brassica carinata HOM05D002718 ORTHO05D003269 4.3e-13 79.0 62 62.9
BraA07t28757Z Brassica rapa HOM05D002718 ORTHO05D003269 1.2e-10 70.9 55 61.8
BolC8t48331H Brassica oleracea HOM05D002718 ORTHO05D003269 1.3e-09 67.4 89 42.7
PSO675G2070 Papaver somniferum HOM05D002718 ORTHO05D021965 1.1e-08 64.3 37 78.4
arahy.Tifrunner.gnm1.ann1.UGM12E Arachis hypogaea HOM05D003313 ORTHO05D004217 1.9e-08 63.5 54 61.1
MCO10G390 Micromonas commoda HOM05D002718 ORTHO05D003269 3.2e-08 62.8 153 32.0


User provided reference genes

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