Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G053680 Populus trichocarpa HOM05D003066 ORTHO05D050462 1.5e-121 439.5 220 100.0
Potri.006G229300 Populus trichocarpa HOM05D003066 ORTHO05D004162 4.8e-99 364.8 219 84.5
Sabra06G0177800 Salix brachista HOM05D003066 ORTHO05D004162 2.4e-98 362.5 202 89.1
Manes.16G080300 Manihot esculenta HOM05D003066 ORTHO05D004162 8.4e-96 354.0 219 82.2
Atru.chr7.1062 Acer truncatum HOM05D003066 ORTHO05D004162 2.4e-95 352.4 219 81.3
SGA_v2.0_scaffold163G38030 Striga asiatica HOM05D003066 ORTHO05D004162 9.3e-95 350.5 219 80.8
COL.COLO4_21057 Corchorus olitorius HOM05D003066 ORTHO05D004162 1.6e-94 349.7 219 81.3
Dinv22899 Davidia involucrata HOM05D003066 ORTHO05D004162 6.0e-94 347.8 219 78.5
Gohir.D05G044000 Gossypium hirsutum HOM05D003066 ORTHO05D004162 1.3e-93 346.7 219 79.9
Gorai.009G045100 Gossypium raimondii HOM05D003066 ORTHO05D004162 1.3e-93 346.7 219 79.9
Thecc.09G053700 Theobroma cacao HOM05D003066 ORTHO05D004162 2.3e-93 345.9 219 79.9
Duzib150G0748 Durio zibethinus HOM05D003066 ORTHO05D004162 3.0e-93 345.5 219 79.9
QL02p001223 Quercus lobata HOM05D003066 ORTHO05D004162 3.9e-93 345.1 219 79.9
Actinidia18187 Actinidia chinensis HOM05D003066 ORTHO05D004162 5.1e-93 344.7 219 79.0
Nn8g38884 Nelumbo nucifera HOM05D003066 ORTHO05D004162 6.6e-93 344.4 219 78.5
GSVIVG01035408001 Vitis vinifera HOM05D003066 ORTHO05D004162 6.6e-93 344.4 219 79.5
Gohir.A05G042300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 1.5e-92 343.2 219 79.5
Cpa.g.sc7.178 Carica papaya HOM05D003066 ORTHO05D004162 1.9e-92 342.8 219 78.5
Prupe.1G412100 Prunus persica HOM05D003066 ORTHO05D004162 1.9e-92 342.8 219 79.9
Carub.0007s0747 Capsella rubella HOM05D003066 ORTHO05D004162 3.3e-92 342.0 219 77.6
TAR626G0016 Trochodendron aralioides HOM05D003066 ORTHO05D004162 3.3e-92 342.0 219 77.6
SGA_v2.0_scaffold169G38693 Striga asiatica HOM05D003066 ORTHO05D004162 4.3e-92 341.7 219 78.5
AL7G18660 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 5.6e-92 341.3 219 78.1
Duzib168G0564 Durio zibethinus HOM05D003066 ORTHO05D004162 7.4e-92 340.9 219 78.1
TWI32G0839 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 1.6e-91 339.7 219 78.5
vmacro00142 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 1.6e-91 339.7 202 81.7
AT4G33010 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 2.1e-91 339.3 219 77.6
Dinv27984 Davidia involucrata HOM05D003066 ORTHO05D004162 3.6e-91 338.6 202 83.2
Duzib187G0606 Durio zibethinus HOM05D003066 ORTHO05D004162 3.6e-91 338.6 219 78.1
Rhsim11G0044200 Rhododendron simsii HOM05D003066 ORTHO05D004162 3.6e-91 338.6 202 80.7
Eucgr.C00646 Eucalyptus grandis HOM05D003066 ORTHO05D004162 4.8e-91 338.2 202 81.7
Sp7g30770 Schrenkiella parvula HOM05D003066 ORTHO05D004162 4.8e-91 338.2 219 77.2
CARHR241020 Cardamine hirsuta HOM05D003066 ORTHO05D004162 8.1e-91 337.4 219 77.6
Cfa017953 Carpinus fangiana HOM05D003066 ORTHO05D004162 8.1e-91 337.4 219 77.2
Thhalv10024257m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 8.1e-91 337.4 219 77.6
THA.LOC104803730 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 8.1e-91 337.4 219 77.2
Hund19452 Selenicereus undatus HOM05D003066 ORTHO05D004162 1.1e-90 337.0 219 76.7
Gorai.010G101200 Gossypium raimondii HOM05D003066 ORTHO05D004162 1.4e-90 336.7 219 77.6
Peaxi162Scf00477g00214 Petunia axillaris HOM05D003066 ORTHO05D004162 1.4e-90 336.7 219 77.2
TWI34G1165 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 1.8e-90 336.3 202 82.7
BcaC09g52098 Brassica carinata HOM05D003066 ORTHO05D004162 2.4e-90 335.9 219 76.3
CSS0037920 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 3.1e-90 335.5 219 75.8
Lalb_Chr14g0367671 Lupinus albus HOM05D003066 ORTHO05D004162 3.1e-90 335.5 219 78.1
MD08G1061500 Malus domestica HOM05D003066 ORTHO05D004162 4.0e-90 335.1 219 78.1
PGR031G0611 Punica granatum HOM05D003066 ORTHO05D004162 4.0e-90 335.1 202 81.7
Lj7C275T3 Lonicera japonica HOM05D003066 ORTHO05D004162 5.3e-90 334.7 219 75.3
DCAR_003129 Daucus carota HOM05D003066 ORTHO05D004162 6.9e-90 334.3 219 75.8
Gohir.D06G087600 Gossypium hirsutum HOM05D003066 ORTHO05D004162 6.9e-90 334.3 219 77.2
MSTRG.14054 Avicennia marina HOM05D003066 ORTHO05D004162 9.0e-90 334.0 219 76.7
Ca_13165_v3 Cicer arietinum L. HOM05D003066 ORTHO05D004162 1.2e-89 333.6 219 77.6
MD15G1060200 Malus domestica HOM05D003066 ORTHO05D004162 1.2e-89 333.6 219 77.6
Sc09g0009820 Simmondsia chinensis HOM05D003066 ORTHO05D004162 1.2e-89 333.6 219 75.3
THA.LOC104799166 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 1.5e-89 333.2 219 75.3
Eucgr.C03047 Eucalyptus grandis HOM05D003066 ORTHO05D004162 2.0e-89 332.8 219 76.7
Nitab4.5_0003627g0010 Nicotiana tabacum HOM05D003066 ORTHO05D004162 2.0e-89 332.8 219 76.3
CANSAT25G3853 Cannabis sativa HOM05D003066 ORTHO05D004162 2.6e-89 332.4 219 76.7
QL02p062818 Quercus lobata HOM05D003066 ORTHO05D004162 2.6e-89 332.4 202 80.7
A01p05180 Brassica napus HOM05D003066 ORTHO05D004162 3.4e-89 332.0 219 75.8
C01p05670 Brassica napus HOM05D003066 ORTHO05D004162 3.4e-89 332.0 219 75.8
BraA01t00501Z Brassica rapa HOM05D003066 ORTHO05D004162 3.4e-89 332.0 219 75.8
MBI04_g34129_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 3.4e-89 332.0 219 75.3
BolC1t00546H Brassica oleracea HOM05D003066 ORTHO05D004162 4.5e-89 331.6 219 75.8
FAN27G1891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 4.5e-89 331.6 219 76.7
Ciclev10007310m.g Citrus clementina HOM05D003066 ORTHO05D004162 5.8e-89 331.3 219 75.8
ClCG08G017010 Citrullus lanatus HOM05D003066 ORTHO05D004162 7.6e-89 330.9 219 77.2
Nitab4.5_0001367g0020 Nicotiana tabacum HOM05D003066 ORTHO05D004162 7.6e-89 330.9 219 75.8
SalBow1G0202 Salvia bowleyana HOM05D003066 ORTHO05D004162 7.6e-89 330.9 219 76.3
arahy.Tifrunner.gnm1.ann1.W9U8CY Arachis hypogaea HOM05D003066 ORTHO05D004162 9.9e-89 330.5 219 77.6
CSS0003286 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 9.9e-89 330.5 202 79.7
CSS0010005 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 9.9e-89 330.5 202 79.7
AUR62009150 Chenopodium quinoa HOM05D003066 ORTHO05D004162 9.9e-89 330.5 219 74.9
Lj5g0020573 Lotus japonicus HOM05D003066 ORTHO05D004162 9.9e-89 330.5 219 77.2
CARHR114810 Cardamine hirsuta HOM05D003066 ORTHO05D004162 1.3e-88 330.1 219 75.3
CiPaw.15G039000 Carya illinoinensis HOM05D003066 ORTHO05D004162 1.3e-88 330.1 219 76.3
Haze_18191 Corylus avellana HOM05D003066 ORTHO05D004162 1.3e-88 330.1 202 81.2
Medtr1g016230 Medicago truncatula HOM05D003066 ORTHO05D004162 1.3e-88 330.1 219 76.7
TAR383G0156 Trochodendron aralioides HOM05D003066 ORTHO05D004162 1.3e-88 330.1 219 74.4
vmacro14247 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 1.3e-88 330.1 219 75.3
Gohir.A06G089300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 1.7e-88 329.7 219 75.8
Oeu003985.1 Olea europaea HOM05D003066 ORTHO05D004162 1.7e-88 329.7 202 80.7
CAN.G208.91 Capsicum annuum HOM05D003066 ORTHO05D004162 2.2e-88 329.3 219 75.8
Thhalv10001891m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 2.2e-88 329.3 219 74.9
FAN20G2891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 2.2e-88 329.3 219 76.3
FAN24G0169 Fragaria x ananassa HOM05D003066 ORTHO05D004162 2.9e-88 328.9 219 76.3
Sp4g05960 Schrenkiella parvula HOM05D003066 ORTHO05D004162 2.9e-88 328.9 219 74.9
VMungo0647G0915 Vigna mungo HOM05D003066 ORTHO05D004162 2.9e-88 328.9 219 75.8
Aqoxy7G01226 Aquilegia oxysepala HOM05D003066 ORTHO05D004162 3.8e-88 328.6 219 76.3
FAN15G2565 Fragaria x ananassa HOM05D003066 ORTHO05D004162 3.8e-88 328.6 219 75.8
Lsat_1_v5_gn_5_45900 Lactuca sativa HOM05D003066 ORTHO05D004162 3.8e-88 328.6 219 73.5
Rhsim07G0142300 Rhododendron simsii HOM05D003066 ORTHO05D004162 3.8e-88 328.6 202 79.7
Aa31LG5G9680 Aethionema arabicum HOM05D003066 ORTHO05D004162 4.9e-88 328.2 219 74.4
Lalb_Chr23g0267761 Lupinus albus HOM05D003066 ORTHO05D004162 6.4e-88 327.8 219 75.3
Carub.0004s0590 Capsella rubella HOM05D003066 ORTHO05D004162 8.4e-88 327.4 219 74.4
FvH4_2g31940 Fragaria vesca HOM05D003066 ORTHO05D004162 8.4e-88 327.4 219 76.3
Sed0010471 Sechium edule HOM05D003066 ORTHO05D004162 8.4e-88 327.4 219 75.8
AT2G26080 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 1.4e-87 326.6 219 74.0
arahy.Tifrunner.gnm1.ann1.9IV7G6 Arachis hypogaea HOM05D003066 ORTHO05D004162 1.4e-87 326.6 219 76.7
Glyma.17G228800 Glycine max HOM05D003066 ORTHO05D004162 1.4e-87 326.6 219 76.3
Glyma.04G051200 Glycine max HOM05D003066 ORTHO05D004162 1.9e-87 326.2 219 75.3
CAN.G117.1 Capsicum annuum HOM05D003066 ORTHO05D004162 2.4e-87 325.9 219 75.3
AUR62022077 Chenopodium quinoa HOM05D003066 ORTHO05D004162 2.4e-87 325.9 219 73.5
Glyma.06G052100 Glycine max HOM05D003066 ORTHO05D004162 2.4e-87 325.9 219 75.3
Hund03339 Selenicereus undatus HOM05D003066 ORTHO05D004162 2.4e-87 325.9 219 77.2
Phvul.001G035500 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 3.2e-87 325.5 219 76.3
RcHm_v2.0_Chr6g0310901 Rosa chinensis HOM05D003066 ORTHO05D004162 4.2e-87 325.1 219 75.8
MELO3C010754.2 Cucumis melo HOM05D003066 ORTHO05D004162 5.5e-87 324.7 219 75.3
Cc08_g10590 Coffea canephora HOM05D003066 ORTHO05D004162 7.1e-87 324.3 219 74.4
Glyma.14G094700 Glycine max HOM05D003066 ORTHO05D004162 9.3e-87 323.9 219 75.3
CsaV3_2G025570 Cucumis sativus L. HOM05D003066 ORTHO05D004162 1.2e-86 323.6 219 74.9
PSO210G2602 Papaver somniferum HOM05D003066 ORTHO05D004162 1.2e-86 323.6 219 74.0
GSVIVG01015211001 Vitis vinifera HOM05D003066 ORTHO05D004162 1.2e-86 323.6 202 78.2
MBI01_g09957_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 1.6e-86 323.2 219 74.9
CSS0005439 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 2.1e-86 322.8 219 74.0
Sopen08g018830 Solanum pennellii HOM05D003066 ORTHO05D004162 2.1e-86 322.8 202 78.7
PGSC0003DMG400029938 Solanum tuberosum HOM05D003066 ORTHO05D004162 2.1e-86 322.8 202 78.7
VMungo1309G0513 Vigna mungo HOM05D003066 ORTHO05D004162 2.1e-86 322.8 219 74.0
MSTRG.1683 Avicennia marina HOM05D003066 ORTHO05D004162 2.7e-86 322.4 219 74.9
Phvul.009G077400 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 2.7e-86 322.4 219 74.9
PSO210G3975 Papaver somniferum HOM05D003066 ORTHO05D004162 3.5e-86 322.0 219 74.0
EL10Ac2g03886 Beta vulgaris HOM05D003066 ORTHO05D004162 4.6e-86 321.6 219 73.5
Hma1.2p1_0482F.1_g162430 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 4.6e-86 321.6 202 78.7
Solyc08g065220.3 Solanum lycopersicum HOM05D003066 ORTHO05D004162 4.6e-86 321.6 202 78.2
Psat6g020400 Pisum sativum HOM05D003066 ORTHO05D004162 7.9e-86 320.9 220 76.4
AL4G18230 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 1.0e-85 320.5 219 73.1
HanXRQChr17g0538191 Helianthus annuus HOM05D003066 ORTHO05D004162 1.0e-85 320.5 219 72.6
Ah.10g034390 Amaranthus hybridus HOM05D003066 ORTHO05D004162 3.0e-85 318.9 219 73.5
HanXRQChr13g0410471 Helianthus annuus HOM05D003066 ORTHO05D004162 3.0e-85 318.9 219 71.7
ECA246G1238 Erigeron canadensis HOM05D003066 ORTHO05D004162 3.9e-85 318.5 219 72.1
ECA240G4675 Erigeron canadensis HOM05D003066 ORTHO05D004162 5.1e-85 318.2 219 70.8
HanXRQChr06g0173861 Helianthus annuus HOM05D003066 ORTHO05D004162 6.7e-85 317.8 219 72.1
Migut.A00136 Erythranthe guttata HOM05D003066 ORTHO05D004162 1.5e-84 316.6 219 71.7
ATR0749G006 Amborella trichopoda HOM05D003066 ORTHO05D004162 1.9e-84 316.2 219 71.2
unitig_749.g13830 Utricularia gibba HOM05D003066 ORTHO05D004162 4.3e-84 315.1 219 73.1
Lsat_1_v5_gn_3_24441 Lactuca sativa HOM05D003066 ORTHO05D004162 6.2e-83 311.2 219 70.8
HPP92_006466 Vanilla planifolia HOM05D003066 ORTHO05D004162 1.8e-82 309.7 219 72.1
SEGI_37657 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 2.4e-82 309.3 202 75.2
Migut.E01566 Erythranthe guttata HOM05D003066 ORTHO05D004162 3.1e-82 308.9 219 72.1
Lj7C271T2 Lonicera japonica HOM05D003066 ORTHO05D004162 1.5e-81 306.6 221 70.6
SEGI_16222 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 3.4e-81 305.4 202 74.8
Zm00001eb406880 Zea mays HOM05D003066 ORTHO05D004162 3.4e-81 305.4 201 74.6
CDE06G2405 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 5.5e-79 298.1 202 72.8
SMO201G0119 Selaginella moellendorffii HOM05D003066 ORTHO05D004162 2.3e-69 266.2 219 63.5
unitig_26.g9798 Utricularia gibba HOM05D003066 ORTHO05D004162 2.2e-67 259.6 219 63.0
Mapoly0068s0042 Marchantia polymorpha HOM05D003066 ORTHO05D004162 3.7e-67 258.8 221 60.6
AagrBONN_evm.TU.Sc2ySwM_344.1134 Anthoceros agrestis HOM05D003066 ORTHO05D004162 1.1e-66 257.3 200 63.0
Hma1.2p1_1957F.1_g309050 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 1.0e-64 250.8 196 68.4
CBR_g3314 Chara braunii HOM05D003066 ORTHO05D004162 2.9e-64 249.2 221 59.3
Pp3c16_4520 Physcomitrium patens HOM05D003066 ORTHO05D004162 7.2e-63 244.6 221 56.6
Pp3c16_4550 Physcomitrium patens HOM05D003066 ORTHO05D004162 7.2e-63 244.6 221 56.6
Pp3c27_5030 Physcomitrium patens HOM05D003066 ORTHO05D004162 2.1e-62 243.0 221 57.9
CDE07G0857 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 7.9e-54 214.5 142 72.5
Cre12.g534800 Chlamydomonas reinhardtii HOM05D003066 ORTHO05D004162 3.9e-53 212.2 203 55.7
MCO15G616 Micromonas commoda HOM05D003066 ORTHO05D004162 2.4e-50 203.0 203 53.2
PRCOL_00000289 Prasinoderma coloniale HOM05D003066 ORTHO05D004162 3.1e-50 202.6 219 47.9
Actinidia14716 Actinidia chinensis HOM05D003066 ORTHO05D004162 6.1e-46 188.3 116 82.8
SEGI_39217 Sequoiadendron giganteum HOM05D003066 ORTHO05D050462 6.5e-40 168.3 116 74.1
Cfa026270 Carpinus fangiana HOM05D003066 ORTHO05D004162 1.2e-38 164.1 213 43.2
TPR.G36085 Trifolium pratense HOM05D003066 ORTHO05D004162 2.7e-38 162.9 103 80.6
Actinidia14715 Actinidia chinensis HOM05D003066 ORTHO05D004162 6.1e-38 161.8 150 63.3
Actinidia18185 Actinidia chinensis HOM05D003066 ORTHO05D004162 1.2e-33 147.5 105 76.2
Os06g0611900 Oryza sativa ssp. japonica HOM05D003066 ORTHO05D004162 2.3e-29 133.3 97 64.9
Haze_27049 Corylus avellana HOM05D003066 ORTHO05D004162 1.5e-23 114.0 169 42.0
Lsat_1_v5_gn_2_44261 Lactuca sativa HOM05D003066 ORTHO05D004162 3.0e-21 106.3 74 70.3
Lsat_1_v5_gn_9_38241 Lactuca sativa HOM05D003066 ORTHO05D036429 8.0e-14 81.6 44 86.4
Lsat_1_v5_gn_7_104520 Lactuca sativa HOM05D003066 ORTHO05D036429 3.1e-13 79.7 44 84.1
arahy.Tifrunner.gnm1.ann1.CPP4CW Arachis hypogaea HOM05D003066 ORTHO05D012067 3.4e-12 76.3 47 72.3
Lsat_1_v5_gn_5_141400 Lactuca sativa HOM05D003066 ORTHO05D036429 1.7e-11 73.9 41 85.4
TPR.G13011 Trifolium pratense HOM05D003066 ORTHO05D004162 6.4e-11 72.0 58 60.3
Lsat_1_v5_gn_8_105541 Lactuca sativa HOM05D003066 ORTHO05D048374 1.5e-07 60.8 43 65.1


User provided reference genes

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