Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G053640 Populus trichocarpa HOM05D003066 ORTHO05D021114 1.3e-85 319.7 168 100.0
Potri.006G229300 Populus trichocarpa HOM05D003066 ORTHO05D004162 1.6e-54 216.5 134 82.8
Sabra06G0177800 Salix brachista HOM05D003066 ORTHO05D004162 3.0e-53 212.2 148 75.0
Manes.16G080300 Manihot esculenta HOM05D003066 ORTHO05D004162 7.4e-52 207.6 148 74.3
FAN15G2565 Fragaria x ananassa HOM05D003066 ORTHO05D004162 2.8e-51 205.7 134 78.4
Ca_13165_v3 Cicer arietinum L. HOM05D003066 ORTHO05D004162 3.7e-51 205.3 134 76.9
FAN27G1891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 6.3e-51 204.5 134 77.6
Eucgr.C03047 Eucalyptus grandis HOM05D003066 ORTHO05D004162 1.1e-50 203.8 134 79.1
Gohir.A05G042300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 1.1e-50 203.8 134 76.9
Atru.chr7.1062 Acer truncatum HOM05D003066 ORTHO05D004162 1.4e-50 203.4 148 70.9
FvH4_2g31940 Fragaria vesca HOM05D003066 ORTHO05D004162 1.4e-50 203.4 134 77.6
FAN24G0169 Fragaria x ananassa HOM05D003066 ORTHO05D004162 1.4e-50 203.4 134 77.6
MD15G1060200 Malus domestica HOM05D003066 ORTHO05D004162 1.4e-50 203.4 134 77.6
TWI34G1165 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 1.4e-50 203.4 148 71.6
Cpa.g.sc7.178 Carica papaya HOM05D003066 ORTHO05D004162 1.8e-50 203.0 148 72.3
FAN20G2891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 1.8e-50 203.0 134 77.6
Phvul.001G035500 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 1.8e-50 203.0 134 76.9
THA.LOC104803730 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 1.8e-50 203.0 134 78.4
Duzib187G0606 Durio zibethinus HOM05D003066 ORTHO05D004162 2.4e-50 202.6 148 70.9
Prupe.1G412100 Prunus persica HOM05D003066 ORTHO05D004162 2.4e-50 202.6 134 76.1
CANSAT25G3853 Cannabis sativa HOM05D003066 ORTHO05D004162 3.1e-50 202.2 134 76.1
Duzib168G0564 Durio zibethinus HOM05D003066 ORTHO05D004162 4.1e-50 201.8 148 70.3
Gohir.D05G044000 Gossypium hirsutum HOM05D003066 ORTHO05D004162 4.1e-50 201.8 134 76.1
Gorai.009G045100 Gossypium raimondii HOM05D003066 ORTHO05D004162 4.1e-50 201.8 134 76.1
COL.COLO4_21057 Corchorus olitorius HOM05D003066 ORTHO05D004162 5.3e-50 201.4 134 76.9
Carub.0007s0747 Capsella rubella HOM05D003066 ORTHO05D004162 6.9e-50 201.1 134 76.1
CiPaw.15G039000 Carya illinoinensis HOM05D003066 ORTHO05D004162 6.9e-50 201.1 134 76.1
Duzib150G0748 Durio zibethinus HOM05D003066 ORTHO05D004162 6.9e-50 201.1 148 70.3
Gohir.D06G087600 Gossypium hirsutum HOM05D003066 ORTHO05D004162 6.9e-50 201.1 148 70.9
Gorai.010G101200 Gossypium raimondii HOM05D003066 ORTHO05D004162 6.9e-50 201.1 148 70.9
Thecc.09G053700 Theobroma cacao HOM05D003066 ORTHO05D004162 9.1e-50 200.7 148 70.3
Haze_18191 Corylus avellana HOM05D003066 ORTHO05D004162 1.2e-49 200.3 148 69.6
DCAR_003129 Daucus carota HOM05D003066 ORTHO05D004162 1.2e-49 200.3 148 70.3
Thhalv10024257m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 1.2e-49 200.3 134 77.6
MD08G1061500 Malus domestica HOM05D003066 ORTHO05D004162 1.2e-49 200.3 134 76.1
RcHm_v2.0_Chr6g0310901 Rosa chinensis HOM05D003066 ORTHO05D004162 1.2e-49 200.3 148 71.6
Psat6g020400 Pisum sativum HOM05D003066 ORTHO05D004162 1.5e-49 199.9 134 76.9
QL02p001223 Quercus lobata HOM05D003066 ORTHO05D004162 1.5e-49 199.9 134 76.9
VMungo0647G0915 Vigna mungo HOM05D003066 ORTHO05D004162 1.5e-49 199.9 134 76.9
Sp7g30770 Schrenkiella parvula HOM05D003066 ORTHO05D004162 2.0e-49 199.5 134 76.9
TWI32G0839 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 2.0e-49 199.5 134 76.1
Ah.10g034390 Amaranthus hybridus HOM05D003066 ORTHO05D004162 2.6e-49 199.1 148 70.3
MELO3C010754.2 Cucumis melo HOM05D003066 ORTHO05D004162 2.6e-49 199.1 148 70.3
CsaV3_2G025570 Cucumis sativus L. HOM05D003066 ORTHO05D004162 2.6e-49 199.1 148 70.3
Eucgr.C00646 Eucalyptus grandis HOM05D003066 ORTHO05D004162 2.6e-49 199.1 148 70.9
Thhalv10001891m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 3.4e-49 198.7 134 75.4
Glyma.14G094700 Glycine max HOM05D003066 ORTHO05D004162 3.4e-49 198.7 134 76.1
Sed0010471 Sechium edule HOM05D003066 ORTHO05D004162 3.4e-49 198.7 148 69.6
ClCG08G017010 Citrullus lanatus HOM05D003066 ORTHO05D004162 4.5e-49 198.4 148 70.3
AUR62022077 Chenopodium quinoa HOM05D003066 ORTHO05D004162 5.9e-49 198.0 134 75.4
CSS0037920 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 7.7e-49 197.6 148 70.3
Gohir.A06G089300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 7.7e-49 197.6 148 70.3
TAR383G0156 Trochodendron aralioides HOM05D003066 ORTHO05D004162 7.7e-49 197.6 134 76.1
EL10Ac2g03886 Beta vulgaris HOM05D003066 ORTHO05D004162 1.0e-48 197.2 134 74.6
CARHR241020 Cardamine hirsuta HOM05D003066 ORTHO05D004162 1.0e-48 197.2 148 71.6
Lj7C271T2 Lonicera japonica HOM05D003066 ORTHO05D004162 1.0e-48 197.2 134 75.4
Lj7C275T3 Lonicera japonica HOM05D003066 ORTHO05D004162 1.0e-48 197.2 134 75.4
Lj5g0020573 Lotus japonicus HOM05D003066 ORTHO05D004162 1.0e-48 197.2 134 74.6
Lalb_Chr14g0367671 Lupinus albus HOM05D003066 ORTHO05D004162 1.0e-48 197.2 134 73.9
arahy.Tifrunner.gnm1.ann1.9IV7G6 Arachis hypogaea HOM05D003066 ORTHO05D004162 1.3e-48 196.8 134 75.4
CSS0005439 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 1.3e-48 196.8 148 70.3
CAN.G117.1 Capsicum annuum HOM05D003066 ORTHO05D004162 1.7e-48 196.4 148 68.2
AUR62009150 Chenopodium quinoa HOM05D003066 ORTHO05D004162 1.7e-48 196.4 134 73.9
Sopen08g018830 Solanum pennellii HOM05D003066 ORTHO05D004162 1.7e-48 196.4 148 69.6
THA.LOC104799166 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 1.7e-48 196.4 134 74.6
Hund03339 Selenicereus undatus HOM05D003066 ORTHO05D004162 2.2e-48 196.1 134 74.6
Hund19452 Selenicereus undatus HOM05D003066 ORTHO05D004162 2.2e-48 196.1 134 73.9
Aa31LG5G9680 Aethionema arabicum HOM05D003066 ORTHO05D004162 2.9e-48 195.7 134 75.4
arahy.Tifrunner.gnm1.ann1.W9U8CY Arachis hypogaea HOM05D003066 ORTHO05D004162 2.9e-48 195.7 134 74.6
CAN.G208.91 Capsicum annuum HOM05D003066 ORTHO05D004162 2.9e-48 195.7 148 68.2
Dinv27984 Davidia involucrata HOM05D003066 ORTHO05D004162 2.9e-48 195.7 134 73.9
Medtr1g016230 Medicago truncatula HOM05D003066 ORTHO05D004162 2.9e-48 195.7 134 74.6
Nitab4.5_0001367g0020 Nicotiana tabacum HOM05D003066 ORTHO05D004162 2.9e-48 195.7 148 70.9
vmacro14247 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 2.9e-48 195.7 134 74.6
CARHR114810 Cardamine hirsuta HOM05D003066 ORTHO05D004162 3.8e-48 195.3 148 68.9
AL7G18660 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 5.0e-48 194.9 148 70.3
Glyma.17G228800 Glycine max HOM05D003066 ORTHO05D004162 5.0e-48 194.9 134 75.4
vmacro00142 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 5.0e-48 194.9 134 74.6
Nitab4.5_0003627g0010 Nicotiana tabacum HOM05D003066 ORTHO05D004162 6.5e-48 194.5 148 70.3
Rhsim11G0044200 Rhododendron simsii HOM05D003066 ORTHO05D004162 6.5e-48 194.5 134 74.6
Solyc08g065220.3 Solanum lycopersicum HOM05D003066 ORTHO05D004162 8.5e-48 194.1 148 68.9
AT4G33010 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 1.1e-47 193.7 148 69.6
Ciclev10007310m.g Citrus clementina HOM05D003066 ORTHO05D004162 1.1e-47 193.7 134 74.6
PGR031G0611 Punica granatum HOM05D003066 ORTHO05D004162 1.1e-47 193.7 148 68.9
PGSC0003DMG400029938 Solanum tuberosum HOM05D003066 ORTHO05D004162 1.9e-47 193.0 148 68.2
Peaxi162Scf00477g00214 Petunia axillaris HOM05D003066 ORTHO05D004162 3.2e-47 192.2 148 68.9
Lalb_Chr23g0267761 Lupinus albus HOM05D003066 ORTHO05D004162 4.2e-47 191.8 148 66.9
QL02p062818 Quercus lobata HOM05D003066 ORTHO05D004162 4.2e-47 191.8 134 72.4
Rhsim07G0142300 Rhododendron simsii HOM05D003066 ORTHO05D004162 4.2e-47 191.8 134 72.4
CSS0003286 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 7.2e-47 191.0 134 72.4
CSS0010005 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 7.2e-47 191.0 134 72.4
Oeu003985.1 Olea europaea HOM05D003066 ORTHO05D004162 7.2e-47 191.0 134 73.1
Sp4g05960 Schrenkiella parvula HOM05D003066 ORTHO05D004162 9.4e-47 190.7 134 73.1
TPR.G36085 Trifolium pratense HOM05D003066 ORTHO05D004162 9.4e-47 190.7 134 73.1
Aqoxy7G01226 Aquilegia oxysepala HOM05D003066 ORTHO05D004162 1.2e-46 190.3 134 73.9
Dinv22899 Davidia involucrata HOM05D003066 ORTHO05D004162 1.2e-46 190.3 134 72.4
TAR626G0016 Trochodendron aralioides HOM05D003066 ORTHO05D004162 1.2e-46 190.3 134 73.1
Lsat_1_v5_gn_3_24441 Lactuca sativa HOM05D003066 ORTHO05D004162 1.6e-46 189.9 134 73.1
BcaC09g52098 Brassica carinata HOM05D003066 ORTHO05D004162 2.1e-46 189.5 134 70.9
A01p05180 Brassica napus HOM05D003066 ORTHO05D004162 2.1e-46 189.5 134 70.9
BraA01t00501Z Brassica rapa HOM05D003066 ORTHO05D004162 2.1e-46 189.5 134 70.9
AL4G18230 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 2.7e-46 189.1 149 69.1
SalBow1G0202 Salvia bowleyana HOM05D003066 ORTHO05D004162 2.7e-46 189.1 148 68.9
Lsat_1_v5_gn_5_45900 Lactuca sativa HOM05D003066 ORTHO05D004162 3.6e-46 188.7 134 72.4
PSO210G2602 Papaver somniferum HOM05D003066 ORTHO05D004162 3.6e-46 188.7 134 71.6
C01p05670 Brassica napus HOM05D003066 ORTHO05D004162 4.7e-46 188.3 134 70.1
BolC1t00546H Brassica oleracea HOM05D003066 ORTHO05D004162 4.7e-46 188.3 134 70.1
PSO210G3975 Papaver somniferum HOM05D003066 ORTHO05D004162 4.7e-46 188.3 134 71.6
CDE06G2405 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 6.1e-46 188.0 134 71.6
Cc08_g10590 Coffea canephora HOM05D003066 ORTHO05D004162 6.1e-46 188.0 150 68.0
Sc09g0009820 Simmondsia chinensis HOM05D003066 ORTHO05D004162 7.9e-46 187.6 148 66.2
AT2G26080 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 1.0e-45 187.2 149 68.5
HanXRQChr17g0538191 Helianthus annuus HOM05D003066 ORTHO05D004162 1.0e-45 187.2 134 71.6
CDE07G0857 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 1.4e-45 186.8 134 70.9
HanXRQChr06g0173861 Helianthus annuus HOM05D003066 ORTHO05D004162 1.4e-45 186.8 148 66.9
unitig_749.g13830 Utricularia gibba HOM05D003066 ORTHO05D004162 2.3e-45 186.0 134 71.6
SGA_v2.0_scaffold163G38030 Striga asiatica HOM05D003066 ORTHO05D004162 3.9e-45 185.3 134 70.9
GSVIVG01015211001 Vitis vinifera HOM05D003066 ORTHO05D004162 3.9e-45 185.3 134 70.9
ECA240G4675 Erigeron canadensis HOM05D003066 ORTHO05D004162 5.1e-45 184.9 134 70.1
Glyma.04G051200 Glycine max HOM05D003066 ORTHO05D004162 5.1e-45 184.9 134 70.9
Carub.0004s0590 Capsella rubella HOM05D003066 ORTHO05D004162 8.8e-45 184.1 149 67.8
Glyma.06G052100 Glycine max HOM05D003066 ORTHO05D004162 8.8e-45 184.1 134 70.1
Oeu036336.1 Olea europaea HOM05D003066 ORTHO05D004162 8.8e-45 184.1 134 70.9
ECA246G1238 Erigeron canadensis HOM05D003066 ORTHO05D004162 1.5e-44 183.3 134 69.4
Hma1.2p1_0482F.1_g162430 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 2.6e-44 182.6 150 65.3
Hma1.2p1_1957F.1_g309050 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 2.6e-44 182.6 150 65.3
Migut.A00136 Erythranthe guttata HOM05D003066 ORTHO05D004162 4.4e-44 181.8 148 66.9
MSTRG.14054 Avicennia marina HOM05D003066 ORTHO05D004162 5.7e-44 181.4 134 69.4
MSTRG.1683 Avicennia marina HOM05D003066 ORTHO05D004162 2.2e-43 179.5 134 68.7
Nn8g38884 Nelumbo nucifera HOM05D003066 ORTHO05D004162 3.7e-43 178.7 134 70.9
HPP92_006466 Vanilla planifolia HOM05D003066 ORTHO05D004162 3.7e-43 178.7 148 63.5
Mapoly0068s0042 Marchantia polymorpha HOM05D003066 ORTHO05D004162 4.8e-43 178.3 148 63.5
HanXRQChr13g0410471 Helianthus annuus HOM05D003066 ORTHO05D004162 6.3e-43 177.9 150 64.0
unitig_26.g9798 Utricularia gibba HOM05D003066 ORTHO05D004162 1.4e-42 176.8 148 64.9
Pp3c27_5030 Physcomitrium patens HOM05D003066 ORTHO05D004162 1.8e-42 176.4 148 62.2
SEGI_16222 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 1.8e-42 176.4 148 63.5
VMungo1309G0513 Vigna mungo HOM05D003066 ORTHO05D004162 1.8e-42 176.4 134 65.7
Migut.E01566 Erythranthe guttata HOM05D003066 ORTHO05D004162 3.1e-42 175.6 148 64.2
ATR0749G006 Amborella trichopoda HOM05D003066 ORTHO05D004162 5.3e-42 174.9 136 66.9
SEGI_30765 Sequoiadendron giganteum HOM05D003066 ORTHO05D021114 1.0e-40 170.6 150 61.3
Pp3c16_4520 Physcomitrium patens HOM05D003066 ORTHO05D004162 1.3e-40 170.2 148 60.1
Pp3c16_4550 Physcomitrium patens HOM05D003066 ORTHO05D004162 1.3e-40 170.2 148 60.1
Oeu009352.1 Olea europaea HOM05D003066 ORTHO05D004162 6.5e-40 167.9 134 66.4
Phvul.009G077400 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 8.5e-40 167.5 132 65.2
SMO201G0119 Selaginella moellendorffii HOM05D003066 ORTHO05D004162 1.1e-39 167.2 149 61.1
AagrBONN_evm.TU.Sc2ySwM_344.1134 Anthoceros agrestis HOM05D003066 ORTHO05D004162 3.6e-38 162.2 148 56.8
Zm00001eb406880 Zea mays HOM05D003066 ORTHO05D004162 3.6e-38 162.2 149 57.7
Actinidia14716 Actinidia chinensis HOM05D003066 ORTHO05D004162 3.0e-37 159.1 135 63.0
Cre12.g534800 Chlamydomonas reinhardtii HOM05D003066 ORTHO05D004162 1.3e-35 153.7 135 59.3
Actinidia18186 Actinidia chinensis HOM05D003066 ORTHO05D021114 1.7e-35 153.3 87 83.9
CBR_g3314 Chara braunii HOM05D003066 ORTHO05D004162 2.8e-35 152.5 133 57.9
MCO15G616 Micromonas commoda HOM05D003066 ORTHO05D004162 3.5e-33 145.6 135 57.0
SGA_v2.0_scaffold169G38693 Striga asiatica HOM05D003066 ORTHO05D004162 8.0e-30 134.4 108 68.5
Lsat_1_v5_gn_4_78620 Lactuca sativa HOM05D003066 ORTHO05D021114 5.7e-20 101.7 87 63.2
Actinidia14715 Actinidia chinensis HOM05D003066 ORTHO05D004162 1.3e-19 100.5 77 66.2
Actinidia18187 Actinidia chinensis HOM05D003066 ORTHO05D004162 5.4e-18 95.1 134 50.0
Cfa017953 Carpinus fangiana HOM05D003066 ORTHO05D004162 9.2e-18 94.4 53 84.9
MBI04_g34129_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 3.4e-12 75.9 51 68.6
Sabra18G0049000 Salix brachista HOM05D003066 ORTHO05D021114 7.5e-12 74.7 132 42.4
Lsat_1_v5_gn_4_37620 Lactuca sativa HOM05D003066 ORTHO05D021114 6.2e-06 55.1 33 78.8
MBI01_g09957_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 8.0e-06 54.7 35 77.1


User provided reference genes

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