Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 3.4e-161 571.6 290 100.0
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 6.0e-158 560.8 290 97.6
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 6.4e-152 540.8 304 91.4
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.0e-141 506.9 320 83.4
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.1e-140 503.4 291 85.6
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 9.6e-140 500.4 292 84.6
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.2e-139 500.0 292 83.6
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.8e-139 498.8 292 83.6
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 3.6e-139 498.4 292 84.6
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 6.2e-139 497.7 292 84.2
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.8e-138 496.1 292 82.9
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.2e-137 493.4 293 83.6
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 2.0e-137 492.7 292 83.2
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 3.4e-137 491.9 292 83.2
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.3e-136 490.0 292 81.8
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.7e-136 489.6 294 84.0
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.9e-136 488.8 292 83.6
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.4e-135 486.5 292 82.2
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.4e-135 485.7 291 82.1
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.2e-135 485.0 291 81.8
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.2e-134 483.4 290 81.4
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 2.1e-134 482.6 290 81.4
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.1e-134 482.6 292 82.5
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.7e-134 482.3 294 81.6
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 7.8e-134 480.7 291 81.8
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.0e-133 480.3 292 80.8
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 2.3e-133 479.2 290 81.4
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 3.0e-133 478.8 292 80.1
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 3.9e-133 478.4 292 79.8
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 6.6e-133 477.6 294 78.6
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 1.1e-132 476.9 322 75.8
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 2.5e-132 475.7 290 79.3
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 5.6e-132 474.6 292 80.1
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 9.6e-132 473.8 290 79.0
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 1.6e-131 473.0 291 81.1
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.8e-131 472.2 326 74.2
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 6.2e-131 471.1 290 80.3
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 6.2e-131 471.1 280 82.1
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 9.0e-130 467.2 292 79.8
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.5e-129 466.5 292 78.4
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 2.0e-129 466.1 291 79.0
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.4e-129 464.9 290 78.6
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 7.6e-129 464.2 292 79.5
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 9.9e-129 463.8 292 79.8
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 8.4e-128 460.7 293 78.5
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 8.4e-128 460.7 291 78.0
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.4e-127 459.9 321 73.2
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.9e-127 459.5 291 75.6
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 2.4e-127 459.1 272 83.1
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 3.2e-127 458.8 291 77.7
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 4.2e-127 458.4 290 77.2
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 5.4e-127 458.0 290 78.3
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 9.3e-127 457.2 292 77.7
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.2e-126 456.8 292 77.1
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 2.1e-126 456.1 293 77.5
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 2.7e-126 455.7 291 76.3
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 3.5e-126 455.3 292 77.1
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 3.5e-126 455.3 291 78.0
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 6.0e-126 454.5 291 78.0
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 7.9e-126 454.1 292 77.1
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 2.3e-125 452.6 294 76.9
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.3e-125 452.6 292 78.1
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 5.1e-125 451.4 293 77.5
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 6.6e-125 451.1 293 76.8
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.1e-124 450.3 292 77.1
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.1e-124 450.3 292 77.7
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 1.5e-124 449.9 297 75.4
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 7.4e-124 447.6 292 76.7
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.6e-123 446.4 292 75.0
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 3.6e-123 445.3 292 77.1
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.4e-122 443.4 292 75.0
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 3.4e-121 438.7 291 72.9
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 5.8e-121 438.0 290 74.8
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 1.3e-120 436.8 297 74.4
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 4.9e-120 434.9 292 71.2
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 8.4e-120 434.1 290 73.8
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-119 433.7 293 74.4
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.4e-119 433.3 291 74.6
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.9e-119 433.0 292 73.6
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 2.4e-119 432.6 291 74.2
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 2.4e-119 432.6 291 74.2
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.2e-119 432.2 290 73.8
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 5.5e-119 431.4 268 78.0
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 3.5e-118 428.7 294 70.7
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.3e-117 426.8 292 74.7
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.1e-116 423.7 310 69.7
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.1e-116 423.7 308 69.8
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 3.3e-116 422.2 291 73.9
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 2.4e-114 416.0 285 71.9
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 6.9e-114 414.5 290 72.1
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 6.9e-114 414.5 290 72.1
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.2e-113 413.7 237 86.5
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.5e-113 413.3 292 71.6
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.5e-113 413.3 292 71.2
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.0e-112 410.6 290 71.0
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.0e-112 410.6 293 71.0
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.3e-112 410.2 292 71.2
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.9e-112 409.1 292 72.3
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 2.9e-112 409.1 291 68.7
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 2.9e-112 409.1 385 59.5
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 6.5e-112 407.9 291 71.5
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 8.4e-112 407.5 291 71.5
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 2.7e-110 402.5 290 70.3
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 3.5e-110 402.1 289 70.9
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 3.0e-109 399.1 290 70.0
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 6.7e-109 397.9 293 67.9
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.3e-107 393.7 291 68.0
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 5.3e-106 388.3 291 68.7
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.5e-105 386.7 292 66.8
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 5.9e-105 384.8 299 65.9
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.7e-104 383.3 234 80.8
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 7.2e-103 377.9 293 65.5
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 3.6e-102 375.6 290 65.2
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.9e-100 369.8 296 64.2
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.6e-99 366.7 291 64.6
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.0e-96 357.5 292 66.8
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 5.0e-96 355.1 227 74.4
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.0e-96 355.1 298 62.8
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 1.1e-95 354.0 292 64.0
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 4.2e-95 352.1 208 83.7
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 2.7e-94 349.4 238 73.1
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 3.6e-94 349.0 259 69.1
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.0e-93 347.4 291 62.2
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 3.9e-93 345.5 258 69.4
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 7.4e-92 341.3 191 86.9
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 2.6e-81 306.2 285 54.4
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 3.5e-81 305.8 288 55.9
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 1.8e-77 293.5 184 77.2
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 5.7e-76 288.5 298 50.0
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.6e-73 280.4 297 51.5
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 2.7e-73 279.6 202 68.8
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 7.7e-73 278.1 191 70.2
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 7.5e-68 261.5 292 49.0
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.5e-65 252.3 288 50.7
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 2.3e-53 213.4 293 45.1
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 2.3e-53 213.4 293 45.1
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 2.3e-53 213.4 293 45.1
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.0e-52 210.3 261 49.0
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.0e-45 188.0 105 86.7
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 3.4e-44 183.0 107 84.1
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 8.3e-43 178.3 149 61.1
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.3e-40 171.0 229 45.9
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.9e-39 167.2 154 59.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.6e-39 165.6 154 58.4
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.6e-39 165.6 154 58.4
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 2.7e-33 146.7 188 43.1
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.1e-31 141.4 106 64.2
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 1.9e-31 140.6 85 80.0
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.3e-31 139.8 91 79.1
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 4.9e-27 125.9 73 82.2
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 4.9e-27 125.9 73 82.2
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.9e-26 124.0 72 81.9
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 5.6e-23 112.5 93 65.6
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 2.1e-22 110.5 68 73.5
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 4.0e-21 106.3 128 46.9
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 1.5e-20 104.4 60 76.7
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 1.7e-19 100.9 186 37.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.1e-14 84.0 231 31.2
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 1.1e-13 81.6 59 66.1
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 2.2e-11 73.9 86 50.0
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 9.3e-10 68.6 58 62.1
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 7.4e-07 58.9 44 59.1
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 2.1e-06 57.4 44 56.8


User provided reference genes

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