Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G002801 Populus trichocarpa HOM05D006943 ORTHO05D008565 2.5e-163 579.3 449 100.0
Potri.006G279100 Populus trichocarpa HOM05D006943 ORTHO05D008565 2.6e-96 356.7 430 79.8
Manes.16G137900 Manihot esculenta HOM05D006943 ORTHO05D008565 3.1e-60 236.9 448 44.6
QL12p025818 Quercus lobata HOM05D006943 ORTHO05D008565 1.7e-50 204.5 426 40.1
Haze_21789 Corylus avellana HOM05D006943 ORTHO05D008565 6.6e-47 192.6 433 35.6
Cfa013306 Carpinus fangiana HOM05D006943 ORTHO05D008565 1.6e-45 188.0 433 37.2
Dinv37491 Davidia involucrata HOM05D006943 ORTHO05D008565 1.4e-44 184.9 453 34.4
Dinv38807 Davidia involucrata HOM05D006943 ORTHO05D008565 6.8e-44 182.6 161 57.1
Duzib168G0749 Durio zibethinus HOM05D006943 ORTHO05D008565 2.0e-43 181.0 422 35.3
GSVIVG01035569001 Vitis vinifera HOM05D006943 ORTHO05D008565 8.3e-42 175.6 189 53.4
Nn5g27072 Nelumbo nucifera HOM05D006943 ORTHO05D008565 4.1e-41 173.3 219 44.7
Cpa.g.sc148.5 Carica papaya HOM05D006943 ORTHO05D008565 4.6e-40 169.9 222 45.0
TAR636G0756 Trochodendron aralioides HOM05D006943 ORTHO05D008565 8.6e-39 165.6 219 46.1
TWI63G1698 Tripterygium wilfordii HOM05D006943 ORTHO05D008565 7.3e-38 162.5 173 49.7
CANSAT35G2034 Cannabis sativa HOM05D006943 ORTHO05D008565 8.1e-37 159.1 205 42.4
Thhalv10025787m.g Eutrema salsugineum HOM05D006943 ORTHO05D008565 6.8e-36 156.0 190 45.8
Sed0013911 Sechium edule HOM05D006943 ORTHO05D008565 1.5e-35 154.8 166 46.4
Carub.0007s0929 Capsella rubella HOM05D006943 ORTHO05D008565 2.0e-35 154.5 186 45.2
Aa31LG2G19090 Aethionema arabicum HOM05D006943 ORTHO05D008565 3.4e-35 153.7 177 44.1
AL7G20800 Arabidopsis lyrata HOM05D006943 ORTHO05D008565 3.4e-35 153.7 183 44.8
BcaC01g01105 Brassica carinata HOM05D006943 ORTHO05D008565 3.4e-35 153.7 154 50.0
C03p88130 Brassica napus HOM05D006943 ORTHO05D008565 3.4e-35 153.7 154 50.0
ClCG05G026350 Citrullus lanatus HOM05D006943 ORTHO05D008565 4.4e-35 153.3 192 46.4
A08p18750 Brassica napus HOM05D006943 ORTHO05D008565 7.6e-35 152.5 154 49.4
CsaV3_3G047250 Cucumis sativus L. HOM05D006943 ORTHO05D008565 9.9e-35 152.1 192 47.4
MELO3C003604.2 Cucumis melo HOM05D006943 ORTHO05D008565 2.9e-34 150.6 202 44.6
AT4G31270 Arabidopsis thaliana HOM05D006943 ORTHO05D008565 4.9e-34 149.8 164 47.0
BolC3t21121H Brassica oleracea HOM05D006943 ORTHO05D008565 1.4e-33 148.3 157 49.0
CSS0017346 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 1.4e-33 148.3 144 52.1
CSS0048200 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 1.4e-33 148.3 144 52.1
BraA08t33836Z Brassica rapa HOM05D006943 ORTHO05D008565 2.4e-33 147.5 157 48.4
CARHR239150 Cardamine hirsuta HOM05D006943 ORTHO05D008565 4.2e-33 146.7 186 46.2
Actinidia25739 Actinidia chinensis HOM05D006943 ORTHO05D008565 5.4e-33 146.4 177 44.6
Sp7g29130 Schrenkiella parvula HOM05D006943 ORTHO05D008565 7.1e-33 146.0 190 43.2
BcaB03g12686 Brassica carinata HOM05D006943 ORTHO05D008565 1.2e-32 145.2 149 47.7
CSS0049214 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 1.2e-32 145.2 144 50.7
EL10Ac2g03684 Beta vulgaris HOM05D006943 ORTHO05D008565 3.5e-32 143.7 164 48.8
Hund03260 Selenicereus undatus HOM05D006943 ORTHO05D008565 1.3e-31 141.7 152 50.7
Eucgr.L02411 Eucalyptus grandis HOM05D006943 ORTHO05D008565 3.9e-31 140.2 129 52.7
AUR62020649 Chenopodium quinoa HOM05D006943 ORTHO05D008565 6.6e-31 139.4 151 49.0
Ciclev10009072m.g Citrus clementina HOM05D006943 ORTHO05D008565 8.7e-31 139.0 421 30.2
Eucgr.C02135 Eucalyptus grandis HOM05D006943 ORTHO05D008565 8.7e-31 139.0 169 44.4
Prupe.1G456500 Prunus persica HOM05D006943 ORTHO05D008565 8.7e-31 139.0 205 41.0
AUR62038724 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.9e-30 137.9 151 48.3
AUR62043827 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.9e-30 137.9 151 48.3
Lalb_Chr22g0361191 Lupinus albus HOM05D006943 ORTHO05D008565 1.9e-30 137.9 212 37.7
arahy.Tifrunner.gnm1.ann1.HML22G Arachis hypogaea HOM05D006943 ORTHO05D008565 2.5e-30 137.5 182 41.2
FAN15G2754 Fragaria x ananassa HOM05D006943 ORTHO05D008565 2.5e-30 137.5 180 42.8
THA.LOC104803585 Tarenaya hassleriana HOM05D006943 ORTHO05D008565 2.5e-30 137.5 187 43.9
FvH4_2g36510 Fragaria vesca HOM05D006943 ORTHO05D008565 3.3e-30 137.1 157 47.1
MD15G1104200 Malus domestica HOM05D006943 ORTHO05D008565 5.6e-30 136.3 123 56.1
FAN20G3130 Fragaria x ananassa HOM05D006943 ORTHO05D008565 7.3e-30 136.0 179 44.1
FAN27G2029 Fragaria x ananassa HOM05D006943 ORTHO05D008565 7.3e-30 136.0 169 44.4
MD08G1124900 Malus domestica HOM05D006943 ORTHO05D008565 7.3e-30 136.0 123 56.1
RcHm_v2.0_Chr6g0305361 Rosa chinensis HOM05D006943 ORTHO05D008565 2.1e-29 134.4 156 46.2
arahy.Tifrunner.gnm1.ann1.X8DLDE Arachis hypogaea HOM05D006943 ORTHO05D008565 2.8e-29 134.0 182 40.1
Atru.chr7.2692 Acer truncatum HOM05D006943 ORTHO05D008565 4.8e-29 133.3 404 29.5
Ah.11g044140 Amaranthus hybridus HOM05D006943 ORTHO05D008565 8.1e-29 132.5 135 47.4
MBI16_g00837_MAGBIO Magnolia biondii HOM05D006943 ORTHO05D008565 1.4e-28 131.7 208 39.9
COL.COLO4_18631 Corchorus olitorius HOM05D006943 ORTHO05D008565 5.8e-27 126.3 431 27.6
Sc06g0001270 Simmondsia chinensis HOM05D006943 ORTHO05D008565 7.6e-27 125.9 208 37.5
Aqoxy7G02511 Aquilegia oxysepala HOM05D006943 ORTHO05D008565 1.9e-25 121.3 204 33.8
Cc10_g14290 Coffea canephora HOM05D006943 ORTHO05D008565 7.1e-25 119.4 417 25.4
Solyc08g069160.3 Solanum lycopersicum HOM05D006943 ORTHO05D008565 7.9e-24 115.9 167 37.7
Sopen08g022790 Solanum pennellii HOM05D006943 ORTHO05D008565 7.9e-24 115.9 167 37.7
PGSC0003DMG400029553 Solanum tuberosum HOM05D006943 ORTHO05D008565 7.9e-24 115.9 167 37.7
CSS0045137 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 3.0e-23 114.0 136 45.6
CAN.G480.10 Capsicum annuum HOM05D006943 ORTHO05D008565 2.5e-22 110.9 168 35.7
Nitab4.5_0001942g0070 Nicotiana tabacum HOM05D006943 ORTHO05D008565 3.3e-22 110.5 169 36.7
Lj5g0018295 Lotus japonicus HOM05D006943 ORTHO05D008565 4.3e-22 110.2 192 35.9
Lsat_1_v5_gn_3_68681 Lactuca sativa HOM05D006943 ORTHO05D008565 7.3e-22 109.4 180 38.9
Nitab4.5_0005058g0010 Nicotiana tabacum HOM05D006943 ORTHO05D008565 1.3e-21 108.6 167 35.9
PSO170G5679 Papaver somniferum HOM05D006943 ORTHO05D008565 2.8e-21 107.5 179 36.3
PSO063G4511 Papaver somniferum HOM05D006943 ORTHO05D008565 4.8e-21 106.7 179 36.3
VMungo0647G1044 Vigna mungo HOM05D006943 ORTHO05D008565 4.8e-21 106.7 147 38.8
HanXRQChr03g0081291 Helianthus annuus HOM05D006943 ORTHO05D008565 1.1e-20 105.5 166 38.0
Peaxi162Scf00213g00939 Petunia axillaris HOM05D006943 ORTHO05D008565 1.8e-20 104.8 186 33.3
HPP92_021992 Vanilla planifolia HOM05D006943 ORTHO05D008565 3.1e-20 104.0 211 30.8
TPR.G11968 Trifolium pratense HOM05D006943 ORTHO05D008565 4.0e-20 103.6 162 38.9
ECA246G0365 Erigeron canadensis HOM05D006943 ORTHO05D008565 6.9e-20 102.8 178 36.5
DCAR_004562 Daucus carota HOM05D006943 ORTHO05D008565 9.0e-20 102.4 201 34.8
Phvul.001G077900 Phaseolus vulgaris HOM05D006943 ORTHO05D008565 2.0e-19 101.3 183 36.1
CDE02G0425 Ceratophyllum demersum HOM05D006943 ORTHO05D008565 2.6e-19 100.9 211 35.5
Lsat_1_v5_gn_5_56401 Lactuca sativa HOM05D006943 ORTHO05D008565 3.4e-19 100.5 162 38.3
Ca_01518_v3 Cicer arietinum L. HOM05D006943 ORTHO05D008565 9.9e-19 99.0 200 32.5
Glyma.17G194700 Glycine max HOM05D006943 ORTHO05D008565 9.9e-19 99.0 166 36.7
Glyma.14G138000 Glycine max HOM05D006943 ORTHO05D008565 2.2e-18 97.8 150 37.3
HanXRQChr17g0539241 Helianthus annuus HOM05D006943 ORTHO05D008565 3.8e-18 97.1 182 35.2
Medtr1g009220 Medicago truncatula HOM05D006943 ORTHO05D008565 1.9e-17 94.7 196 32.1
Psat6g033160 Pisum sativum HOM05D006943 ORTHO05D008565 1.9e-17 94.7 130 43.1
ECA240G4190 Erigeron canadensis HOM05D006943 ORTHO05D008565 5.4e-17 93.2 74 55.4
CSS0031863 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 9.3e-17 92.4 110 47.3
Zm00001eb233350 Zea mays HOM05D006943 ORTHO05D008565 3.9e-15 87.0 129 34.9
ATR0626G281 Amborella trichopoda HOM05D006943 ORTHO05D008565 1.1e-14 85.5 140 34.3
Os02g0174300 Oryza sativa ssp. japonica HOM05D006943 ORTHO05D008565 5.6e-14 83.2 123 35.8
Migut.E01408 Erythranthe guttata HOM05D006943 ORTHO05D008565 1.3e-13 82.0 72 51.4
Migut.E01420 Erythranthe guttata HOM05D006943 ORTHO05D008565 1.3e-13 82.0 72 51.4
Oeu008780.1 Olea europaea HOM05D006943 ORTHO05D008565 8.1e-13 79.3 73 47.9
Atru.chr6.219 Acer truncatum HOM05D006943 ORTHO05D008565 1.1e-12 79.0 71 56.3
MSTRG.13929 Avicennia marina HOM05D006943 ORTHO05D008565 4.0e-12 77.0 112 37.5
SalBow8G0710 Salvia bowleyana HOM05D006943 ORTHO05D008565 4.0e-12 77.0 204 27.5
MSTRG.13940 Avicennia marina HOM05D006943 ORTHO05D008565 6.9e-12 76.3 112 36.6
EL10Ac5g11294 Beta vulgaris HOM05D002537 ORTHO05D002751 2.9e-10 70.9 142 26.8
Lalb_Chr07g0183801 Lupinus albus HOM05D002537 ORTHO05D002751 3.8e-10 70.5 126 27.8
Pp3c26_2600 Physcomitrium patens HOM05D002537 ORTHO05D002751 4.9e-10 70.1 120 33.3
Pp3c26_2630 Physcomitrium patens HOM05D002537 ORTHO05D002751 4.9e-10 70.1 120 33.3
Thecc.09G002300 Theobroma cacao HOM05D006943 ORTHO05D008565 6.5e-10 69.7 66 53.0
VMungo0720G0266 Vigna mungo HOM05D006943 ORTHO05D008565 8.4e-10 69.3 143 32.9
Actinidia03335 Actinidia chinensis HOM05D006943 ORTHO05D008565 1.1e-09 68.9 50 64.0
Mapoly0001s0020 Marchantia polymorpha HOM05D002537 ORTHO05D002751 1.4e-09 68.6 134 27.6
Mapoly0003s0164 Marchantia polymorpha HOM05D003725 ORTHO05D004294 3.2e-09 67.4 121 26.4
Pp3c4_22830 Physcomitrium patens HOM05D002537 ORTHO05D002751 4.2e-09 67.0 155 29.0
Pp3c4_22880 Physcomitrium patens HOM05D002537 ORTHO05D002751 4.2e-09 67.0 155 29.0
Atru.chr6.1911 Acer truncatum HOM05D002537 ORTHO05D002751 7.1e-09 66.2 122 25.4
Lj6A725G109 Lonicera japonica HOM05D003725 ORTHO05D004294 9.3e-09 65.9 143 23.8
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 9.3e-09 65.9 132 27.3
Pp3c15_4190 Physcomitrium patens HOM05D002537 ORTHO05D002751 9.3e-09 65.9 132 24.2
QL10p000562 Quercus lobata HOM05D002537 ORTHO05D002751 9.3e-09 65.9 119 27.7
Peaxi162Scf00314g00642 Petunia axillaris HOM05D002537 ORTHO05D002751 1.2e-08 65.5 120 25.8
VMungo0331G1831 Vigna mungo HOM05D006943 ORTHO05D008565 1.2e-08 65.5 143 30.8
Ciclev10033491m.g Citrus clementina HOM05D002537 ORTHO05D002751 1.6e-08 65.1 148 24.3
Mapoly0056s0059 Marchantia polymorpha HOM05D002537 ORTHO05D002751 2.1e-08 64.7 243 24.3
Rhsim01G0256100 Rhododendron simsii HOM05D006943 ORTHO05D008565 2.1e-08 64.7 71 47.9
Pp3c4_270 Physcomitrium patens HOM05D002537 ORTHO05D002751 7.9e-08 62.8 143 25.9
SEGI_36760 Sequoiadendron giganteum HOM05D002537 ORTHO05D002751 7.9e-08 62.8 110 28.2
Duzib248G0352 Durio zibethinus HOM05D003725 ORTHO05D004294 1.0e-07 62.4 133 30.1
Mapoly0142s0034 Marchantia polymorpha HOM05D002537 ORTHO05D002751 1.0e-07 62.4 122 29.5
TPR.G9809 Trifolium pratense HOM05D003725 ORTHO05D004294 1.0e-07 62.4 117 27.4
ATR0626G112 Amborella trichopoda HOM05D002537 ORTHO05D002751 1.3e-07 62.0 112 29.5
Lj5g0020243 Lotus japonicus HOM05D003725 ORTHO05D004294 1.3e-07 62.0 104 28.8
Lalb_Chr06g0170301 Lupinus albus HOM05D003725 ORTHO05D004294 1.3e-07 62.0 152 25.7
QL03p041403 Quercus lobata HOM05D003725 ORTHO05D004294 1.3e-07 62.0 164 26.2
CSS0030889 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 1.8e-07 61.6 115 31.3
PGSC0003DMG400014176 Solanum tuberosum HOM05D002537 ORTHO05D002751 1.8e-07 61.6 112 24.1
Ca_10529_v3 Cicer arietinum L. HOM05D003725 ORTHO05D004294 2.3e-07 61.2 114 29.8
Thecc.02G298200 Theobroma cacao HOM05D003725 ORTHO05D004294 2.3e-07 61.2 127 26.8
Lalb_Chr13g0296971 Lupinus albus HOM05D002537 ORTHO05D002751 3.0e-07 60.8 130 25.4
Nitab4.5_0010249g0020 Nicotiana tabacum HOM05D002537 ORTHO05D002751 3.0e-07 60.8 112 24.1
AagrBONN_evm.TU.Sc2ySwM_344.4466 Anthoceros agrestis HOM05D002537 ORTHO05D002751 3.9e-07 60.5 138 29.7
Cpa.g.sc2.95 Carica papaya HOM05D003725 ORTHO05D004294 3.9e-07 60.5 118 28.8
SEGI_31691 Sequoiadendron giganteum HOM05D002537 ORTHO05D004294 3.9e-07 60.5 110 27.3
SEGI_25002 Sequoiadendron giganteum HOM05D002537 ORTHO05D002751 5.1e-07 60.1 132 25.0
Gorai.002G021600 Gossypium raimondii HOM05D002537 ORTHO05D002751 8.7e-07 59.3 147 26.5
Pp3c17_6370 Physcomitrium patens HOM05D003725 ORTHO05D004294 8.7e-07 59.3 81 28.4
Manes.15G141750 Manihot esculenta HOM05D003725 ORTHO05D004294 1.1e-06 58.9 112 28.6
Manes.17G092600 Manihot esculenta HOM05D003725 ORTHO05D004294 1.9e-06 58.2 122 26.2
Sed0022566 Sechium edule HOM05D003725 ORTHO05D004294 1.9e-06 58.2 113 24.8
AagrBONN_evm.TU.Sc2ySwM_228.3825 Anthoceros agrestis HOM05D003725 ORTHO05D004294 3.3e-06 57.4 67 38.8
arahy.Tifrunner.gnm1.ann1.NE0D4P Arachis hypogaea HOM05D003725 ORTHO05D004294 3.3e-06 57.4 99 28.3
arahy.Tifrunner.gnm1.ann1.2EGS27 Arachis hypogaea HOM05D003725 ORTHO05D004294 4.3e-06 57.0 99 28.3
TAR396G0001 Trochodendron aralioides HOM05D003725 ORTHO05D004294 4.3e-06 57.0 148 23.6
AagrBONN_evm.TU.Sc2ySwM_362.820 Anthoceros agrestis HOM05D002537 ORTHO05D004294 5.7e-06 56.6 162 25.9
Medtr1g094045 Medicago truncatula HOM05D003725 ORTHO05D004294 5.7e-06 56.6 124 29.0
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 7.4e-06 56.2 117 23.1
Zm00001eb217780 Zea mays HOM05D003725 ORTHO05D004294 7.4e-06 56.2 109 23.9


User provided reference genes

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