Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 8.8e-99 363.6 183 100.0
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 8.2e-97 357.1 183 97.3
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.0e-94 350.1 190 93.7
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.3e-94 349.7 183 95.1
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 2.6e-90 335.5 183 90.7
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 2.2e-89 332.4 183 89.1
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 3.7e-89 331.6 183 89.6
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.7e-89 331.6 183 88.5
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 6.3e-89 330.9 183 88.0
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 89.1
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 89.1
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.4e-88 329.7 182 89.6
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 87.4
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 86.9
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 88.5
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 86.9
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 89.1
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 87.4
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 87.4
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 87.4
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 1.2e-87 326.6 181 86.7
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 87.4
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 85.8
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 86.3
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 87.4
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 1.5e-85 319.7 183 86.9
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 1.5e-85 319.7 181 86.2
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 85.8
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 84.2
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 85.2
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.6
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.6
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.6
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.6
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.6
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 85.2
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 84.2
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 84.2
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 85.8
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 83.6
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 84.2
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 6.1e-84 314.3 181 84.0
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 82.5
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 83.6
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 80.9
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.5
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 81.4
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 83.6
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 82.5
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 82.5
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 80.3
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 82.0
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.0
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 83.1
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 81.4
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 4.4e-82 308.1 182 82.4
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 82.5
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 82.5
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 4.4e-82 308.1 181 82.3
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 7.5e-82 307.4 183 81.4
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 2.8e-81 305.4 179 82.1
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 82.5
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 82.0
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 79.8
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 80.3
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 80.3
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 80.9
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 80.9
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 80.9
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 6.3e-81 304.3 182 81.3
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 8.3e-81 303.9 183 81.4
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 80.1
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 8.3e-81 303.9 182 80.8
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 8.3e-81 303.9 182 80.2
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.1e-80 303.5 179 82.1
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 80.9
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 79.2
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.8e-80 302.8 179 81.6
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.8e-80 302.8 183 80.3
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 7.0e-80 300.8 183 79.8
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 7.0e-80 300.8 183 79.8
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 79.0
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 1.2e-79 300.1 179 80.4
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.6e-79 299.7 181 78.5
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 1.6e-79 299.7 183 77.6
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 79.8
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 2.0e-79 299.3 181 79.0
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.0e-79 299.3 184 77.2
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 79.0
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 79.8
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 78.7
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 79.6
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 77.9
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 79.6
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 78.7
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.0e-78 297.0 181 79.6
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.0e-78 297.0 181 79.6
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.0e-78 297.0 181 79.6
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.3e-78 296.6 184 76.6
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.3e-78 295.8 183 79.2
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 5.0e-78 294.7 179 78.8
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 6.6e-78 294.3 183 78.7
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.5e-77 293.1 179 78.8
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.9e-77 292.7 179 79.3
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.9e-77 292.7 184 76.6
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 4.3e-77 291.6 228 68.0
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 5.6e-77 291.2 183 79.2
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 2.1e-76 289.3 182 78.6
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 2.8e-76 288.9 184 75.5
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 2.8e-76 288.9 183 78.7
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 2.3e-75 285.8 182 75.3
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 8.9e-75 283.9 184 73.4
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 2.6e-74 282.3 183 75.4
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 3.4e-74 282.0 183 72.7
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 3.7e-73 278.5 219 67.1
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.7e-73 278.5 183 71.0
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.8e-72 276.2 185 71.9
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 3.5e-71 271.9 184 70.1
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.0e-70 270.4 152 84.2
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.1e-69 266.9 183 67.2
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 7.3e-69 264.2 183 73.8
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 9.5e-69 263.8 155 79.4
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 1.2e-68 263.5 183 73.8
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.6e-68 261.9 155 81.9
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 1.2e-66 256.9 181 68.0
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 2.2e-65 252.7 152 81.6
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 6.0e-63 244.6 181 69.6
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 5.0e-62 241.5 181 66.3
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 8.6e-62 240.7 136 83.1
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 3.3e-61 238.8 188 67.0
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 6.4e-57 224.6 138 77.5
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 8.3e-57 224.2 183 63.9
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.5e-55 218.8 183 63.4
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 1.0e-54 217.2 155 69.7
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.7e-54 216.5 184 60.3
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 8.9e-51 204.1 179 63.1
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 4.9e-49 198.4 158 61.4
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 5.4e-48 194.9 152 63.2
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.3e-46 189.5 102 90.2
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.5e-45 186.0 149 62.4
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 2.5e-45 186.0 102 87.3
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 4.3e-45 185.3 100 89.0
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 5.6e-45 184.9 186 50.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.7e-44 181.8 99 88.9
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 8.1e-44 181.0 100 89.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 1.2e-42 177.2 158 57.0
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 2.0e-42 176.4 146 59.6
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 8.4e-41 171.0 106 76.4
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.3e-37 159.1 134 61.2
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.9e-33 146.0 105 66.7
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.9e-32 143.3 99 67.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 7.1e-32 141.4 81 85.2
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 8.7e-30 134.4 78 84.6
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 3.4e-26 122.5 106 59.4
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 4.5e-26 122.1 81 74.1
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.3e-25 120.6 101 60.4
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 4.0e-19 99.0 68 63.2
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.6e-18 96.3 52 90.4
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.9e-16 90.1 106 50.9
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 4.2e-16 89.0 127 45.7
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 4.2e-08 62.4 37 70.3
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 4.6e-07 58.9 121 34.7
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 4.6e-07 58.9 81 42.0
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 3.9e-06 55.8 140 23.6
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 6.7e-06 55.1 98 33.7


User provided reference genes

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