Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1996.9 1020 100.0
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1839.3 1038 90.8
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1832.8 1021 90.9
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1690.6 1030 83.9
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1620.9 1044 80.2
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1619.8 1043 80.2
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1612.0 1032 80.3
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1610.1 1030 81.0
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1607.8 1040 78.9
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1607.0 1045 78.6
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1605.5 1045 78.5
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1602.8 1044 78.9
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1602.0 1052 78.1
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1598.9 1052 78.0
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1597.0 1045 78.4
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1596.3 1041 79.3
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1595.9 1040 79.2
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1595.1 1040 79.2
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1593.9 1044 78.1
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1588.9 1041 79.2
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1583.5 1042 78.4
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1580.5 1043 77.5
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1578.5 1045 78.0
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1578.1 1052 77.7
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1578.1 1037 78.1
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1575.8 1039 77.7
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1570.4 1019 78.7
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1569.3 1029 77.6
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1568.9 1019 79.2
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1568.1 1046 76.9
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1565.4 1036 77.7
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1565.1 1039 77.1
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1563.9 1030 78.2
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1560.8 1039 76.4
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1560.0 1040 76.7
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1558.9 1044 76.2
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1557.0 1055 75.6
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1557.0 1044 76.3
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1556.2 1049 77.6
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1555.8 1037 77.2
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1555.8 1045 76.2
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1553.9 1044 76.9
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1550.8 1019 78.3
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1548.9 1082 74.4
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1546.6 1043 77.5
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1541.9 1048 75.7
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1541.2 1045 75.6
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1540.4 1051 75.9
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1539.6 1036 76.3
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1536.5 1039 75.9
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1535.0 1067 75.7
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1534.2 1043 75.2
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1533.5 1046 75.4
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1533.5 1046 75.0
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1533.1 1042 75.6
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1530.8 1040 74.5
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1529.6 1042 75.5
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1522.7 1068 74.7
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1522.3 1044 75.0
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1521.9 1025 75.6
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1521.1 1039 74.9
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1520.0 1039 75.5
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1519.2 1034 76.3
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1512.3 1042 74.7
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1512.3 1013 76.0
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1510.0 1037 74.1
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1508.0 1046 74.7
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1506.9 1050 74.2
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1505.7 1038 74.2
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1501.1 1040 74.0
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1500.7 1047 73.4
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1500.7 1040 73.6
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1500.7 1047 73.4
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1500.3 1044 73.9
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1499.6 1041 73.3
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1499.2 1041 73.7
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1498.4 1083 72.5
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1498.0 1046 75.0
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1496.5 1027 74.6
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1495.7 1038 74.1
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1494.9 1040 74.0
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1493.4 1029 74.5
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1491.5 1040 73.8
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1487.2 1018 73.9
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1483.8 1046 74.5
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1481.8 1022 73.9
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1478.4 1046 72.8
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1476.5 1046 72.7
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1472.6 1042 74.4
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1471.4 1042 74.3
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1468.4 1020 73.8
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1465.7 1037 72.8
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1460.3 1086 71.7
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1459.9 1040 72.6
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1454.9 1042 72.3
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1450.6 1084 71.4
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1441.4 1140 66.8
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1421.0 1022 71.3
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1417.5 1012 72.0
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1402.9 1059 69.8
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1369.4 1020 68.7
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1347.8 1044 67.9
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1347.0 1015 69.4
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1328.2 1039 68.7
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1306.2 914 73.1
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1293.1 1035 66.2
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1290.0 947 70.3
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1281.9 960 68.0
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1269.6 1027 65.3
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1255.7 994 67.1
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1249.6 1012 63.7
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1192.6 833 72.5
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1089.3 1022 56.3
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 3.5e-311 1071.6 753 73.8
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 1.2e-309 1066.6 1013 56.7
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 6.7e-297 1024.2 1024 54.0
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 8.7e-297 1023.8 1012 53.4
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 3.9e-289 998.4 702 70.8
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 3.3e-288 995.3 622 82.6
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.2e-287 992.6 703 70.6
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-272 942.2 988 54.1
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 3.5e-261 905.6 1013 51.7
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 2.0e-256 889.8 612 73.2
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-255 887.1 1018 51.5
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.8e-254 883.2 1004 51.4
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-253 880.2 944 54.6
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 8.1e-234 814.7 559 73.7
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 2.3e-233 813.1 479 85.2
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 2.9e-215 753.1 446 84.3
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 7.9e-197 691.8 1017 43.9
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.5e-184 651.0 437 75.5
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 6.1e-181 639.0 993 41.7
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 3.7e-178 629.8 399 77.7
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 6.9e-177 625.5 387 81.4
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 8.2e-170 602.1 522 58.6
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.6e-168 597.0 481 66.3
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 4.8e-162 576.2 1040 36.9
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 4.5e-152 543.1 454 63.2
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.0e-140 505.4 408 62.7
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-139 501.5 373 70.0
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.7e-139 499.6 367 70.6
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.7e-139 499.6 367 70.6
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-132 477.6 372 68.5
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.8e-129 468.0 322 71.1
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 9.2e-129 465.7 495 54.5
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 7.0e-121 439.5 546 48.7
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 6.0e-120 436.4 586 45.2
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 7.8e-120 436.0 1035 31.9
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 8.9e-116 422.5 634 42.1
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.4e-100 372.1 294 67.3
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 5.4e-97 360.1 295 63.4
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.8e-87 328.6 194 84.5
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-87 327.0 499 43.1
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 2.4e-76 291.6 502 36.5
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.4e-73 282.3 282 57.4
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 3.3e-70 271.2 421 43.9
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 2.4e-68 265.0 399 42.6
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.6e-67 261.5 185 73.5
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 9.1e-60 236.5 135 84.4
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.1e-60 236.5 290 48.6
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.1e-52 209.9 226 54.4
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 1.0e-50 206.5 162 69.8
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.4e-49 199.9 219 54.8
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.0e-47 196.4 123 79.7
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 4.5e-43 181.0 191 47.6
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.3e-42 179.5 143 68.5
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 1.8e-39 169.1 131 65.6
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 3.8e-34 151.4 176 51.1
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.5e-34 150.6 130 61.5
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.5e-30 139.4 253 38.7
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.1e-25 123.2 91 71.4
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 3.3e-25 121.7 92 66.3
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 8.9e-23 113.6 209 38.3
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 4.4e-22 111.3 255 32.9
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.4e-12 79.7 55 67.3
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 7.0e-12 77.4 72 52.8
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 6.0e-11 74.3 62 61.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 2.3e-10 72.4 115 42.6
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 3.9e-10 71.6 49 69.4
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 8.0e-08 63.9 71 47.9


User provided reference genes

Program Settings