Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 6.1e-100 367.5 182 100.0
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 4.2e-93 344.7 185 91.9
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 1.4e-91 339.7 185 90.8
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 1.7e-81 306.2 185 80.5
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 2.2e-81 305.8 185 82.2
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 7.0e-80 300.8 185 78.9
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.2e-79 300.1 185 79.5
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.6e-79 299.7 185 81.1
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.6e-79 299.7 185 80.0
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 3.5e-79 298.5 185 79.5
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 1.7e-78 296.2 184 78.8
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.7e-78 296.2 183 78.7
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 2.2e-78 295.8 185 78.4
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 2.9e-78 295.4 185 78.4
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 2.9e-78 295.4 185 79.5
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 3.8e-78 295.0 185 78.9
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 5.0e-78 294.7 185 78.4
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 5.0e-78 294.7 185 78.4
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 5.0e-78 294.7 181 78.5
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 6.5e-78 294.3 183 77.6
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 6.5e-78 294.3 179 77.7
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.9e-77 292.7 185 77.8
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.5e-77 292.4 185 76.2
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.5e-77 292.4 185 77.8
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 3.2e-77 292.0 185 78.4
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 3.2e-77 292.0 185 78.4
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.2e-77 292.0 185 77.3
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 7.2e-77 290.8 185 76.8
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.2e-76 290.0 181 77.9
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.2e-76 290.0 185 77.8
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.6e-76 289.7 185 77.8
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 1.6e-76 289.7 181 77.3
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 2.1e-76 289.3 185 77.3
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 2.7e-76 288.9 185 76.8
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.8e-75 286.2 185 77.3
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.8e-75 286.2 177 77.4
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.8e-75 286.2 181 75.7
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 2.3e-75 285.8 185 75.7
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 3.0e-75 285.4 185 75.7
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 3.0e-75 285.4 185 75.7
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.2e-75 284.6 185 75.7
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 8.8e-75 283.9 185 73.5
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.2e-74 283.5 185 74.6
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.4e-74 282.0 183 73.8
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.4e-74 282.0 185 72.4
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 4.4e-74 281.6 178 77.5
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.4e-74 281.6 178 77.5
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.4e-74 281.6 183 73.2
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.3e-73 280.0 185 72.4
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.3e-73 280.0 185 72.4
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.3e-73 280.0 185 74.6
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.7e-73 279.6 183 74.9
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 2.2e-73 279.3 183 73.8
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.2e-73 279.3 185 74.6
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 3.7e-73 278.5 183 74.9
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 4.8e-73 278.1 183 75.4
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 4.8e-73 278.1 183 74.3
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 4.8e-73 278.1 185 73.5
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 6.3e-73 277.7 183 74.9
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 1.1e-72 276.9 183 74.3
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 1.4e-72 276.6 179 76.0
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 72.4
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 1.8e-72 276.2 184 75.0
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 1.8e-72 276.2 185 73.5
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.4e-72 275.8 183 71.6
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.1e-72 275.0 183 72.7
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.1e-72 275.0 183 72.1
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.1e-72 275.0 183 72.1
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 4.1e-72 275.0 183 73.2
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 1.6e-71 273.1 183 71.6
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.6e-71 273.1 185 70.3
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.5e-71 271.9 181 71.3
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 7.7e-71 270.8 182 72.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.9e-70 268.9 178 71.9
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 3.8e-70 268.5 180 71.1
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 5.0e-70 268.1 179 72.6
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.9e-69 266.2 185 70.3
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.9e-69 266.2 179 70.9
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 2.5e-69 265.8 181 71.3
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 2.5e-69 265.8 183 67.2
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 3.2e-69 265.4 183 68.9
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.2e-69 265.4 183 71.6
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 5.5e-69 264.6 180 69.4
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 7.2e-69 264.2 179 72.6
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 7.2e-69 264.2 185 68.6
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 7.2e-69 264.2 178 69.7
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.2e-68 263.5 182 69.8
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.2e-68 263.5 182 69.8
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.6e-68 263.1 185 68.6
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.6e-68 263.1 186 67.7
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.1e-68 262.7 181 70.2
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.7e-68 262.3 183 71.0
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 4.7e-68 261.5 184 69.0
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 6.1e-68 261.2 184 66.8
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 1.0e-67 260.4 179 72.1
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.4e-67 260.0 176 71.6
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.8e-67 259.6 179 70.4
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.8e-67 259.6 179 70.4
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.8e-67 259.6 179 70.4
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 4.0e-67 258.5 181 69.6
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 4.0e-67 258.5 179 69.8
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 4.0e-67 258.5 186 66.7
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 5.2e-67 258.1 181 69.1
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 8.8e-67 257.3 181 68.0
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 2.0e-66 256.1 179 68.2
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 2.0e-66 256.1 179 68.2
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.0e-66 256.1 182 67.6
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 3.4e-66 255.4 181 68.5
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 5.7e-66 254.6 180 70.0
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 5.7e-66 254.6 177 65.5
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 5.7e-66 254.6 178 70.2
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 9.8e-66 253.8 185 67.0
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 9.8e-66 253.8 182 66.5
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.7e-65 253.1 177 68.9
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 3.7e-65 251.9 190 67.4
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 4.9e-65 251.5 174 69.0
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 3.1e-64 248.8 180 66.1
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 7.0e-64 247.7 185 66.5
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 5.9e-63 244.6 171 70.8
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 7.7e-63 244.2 180 66.7
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.3e-62 242.7 183 64.5
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 8.6e-62 240.7 186 66.7
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 4.3e-61 238.4 185 64.9
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 7.3e-61 237.7 174 69.0
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 7.3e-61 237.7 178 65.7
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 2.1e-60 236.1 180 64.4
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.4e-59 233.4 180 63.9
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 7.0e-56 221.1 178 61.2
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 7.0e-56 221.1 183 56.8
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.5e-55 218.8 180 64.4
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 2.1e-52 209.5 178 60.7
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 4.7e-52 208.4 170 64.1
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.8e-51 206.5 181 56.4
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 3.2e-48 195.7 186 54.3
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.8e-44 182.6 197 49.7
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.6e-42 176.0 116 71.6
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.9e-41 171.8 122 66.4
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 4.7e-36 155.2 175 42.3
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 1.9e-32 143.3 155 49.0
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.4e-27 126.3 108 59.3
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 5.4e-24 115.2 73 74.0
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 5.1e-22 108.6 99 56.6
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 9.3e-16 87.8 164 32.3
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 5.1e-14 82.0 57 73.7
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 5.8e-10 68.6 55 56.4
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 5.8e-10 68.6 55 56.4
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 1.1e-08 64.3 41 75.6


User provided reference genes

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