Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 1.8e-96 355.9 178 100.0
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 4.3e-58 228.4 163 71.8
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 4.3e-58 228.4 163 71.8
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 4.3e-58 228.4 163 71.8
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 4.3e-58 228.4 163 71.8
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 4.3e-58 228.4 163 71.8
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 4.3e-58 228.4 163 71.8
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 4.3e-58 228.4 163 71.8
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 4.3e-58 228.4 163 71.8
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 4.3e-58 228.4 163 71.8
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.6e-57 226.5 163 71.2
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 6.2e-57 224.6 163 70.6
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 6.2e-57 224.6 163 70.6
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 6.2e-57 224.6 163 71.8
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 8.1e-57 224.2 163 70.6
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 1.1e-56 223.8 164 71.3
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.3e-56 221.5 163 69.9
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 6.9e-56 221.1 163 70.6
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 6.9e-56 221.1 163 70.6
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.5e-55 219.9 163 70.6
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 5.8e-55 218.0 163 69.9
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 5.8e-55 218.0 163 69.9
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 5.8e-55 218.0 163 69.9
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 5.8e-55 218.0 163 69.9
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 9.9e-55 217.2 163 69.9
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 1.7e-54 216.5 163 69.9
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 4.9e-54 214.9 163 68.1
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 8.4e-54 214.2 163 68.1
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 8.4e-54 214.2 163 68.1
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 8.4e-54 214.2 163 68.1
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 1.1e-53 213.8 163 68.7
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 2.4e-53 212.6 163 67.5
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 4.2e-53 211.8 163 68.7
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 9.3e-53 210.7 163 69.3
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 2.1e-52 209.5 163 68.1
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 3.5e-52 208.8 163 66.9
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.3e-51 206.8 163 67.5
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 1.8e-51 206.5 163 64.4
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 3.9e-51 205.3 163 66.3
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 1.9e-50 203.0 126 81.0
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 1.9e-50 203.0 163 65.6
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 3.3e-50 202.2 129 78.3
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 3.3e-50 202.2 129 78.3
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 3.3e-50 202.2 129 78.3
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 3.3e-50 202.2 129 78.3
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 3.3e-50 202.2 129 78.3
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 3.3e-50 202.2 129 78.3
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 4.3e-50 201.8 129 77.5
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 9.6e-50 200.7 163 64.4
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 1.3e-49 200.3 129 76.0
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 3.7e-49 198.7 129 74.4
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 4.8e-49 198.4 129 76.0
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 6.2e-49 198.0 201 55.7
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 4.0e-48 195.3 161 64.6
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 4.0e-48 195.3 129 73.6
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 5.3e-48 194.9 129 75.2
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.4e-45 186.0 113 80.5
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 2.4e-45 186.0 129 71.3
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 7.1e-45 184.5 163 60.7
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.5e-44 182.2 168 60.7
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 4.6e-44 181.8 113 78.8
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.9e-44 181.0 112 79.5
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 2.3e-43 179.5 163 61.3
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.7e-43 177.9 167 59.9
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 9.6e-42 174.1 152 61.8
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.3e-41 173.7 107 79.4
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.3e-41 173.7 107 79.4
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.1e-41 172.9 107 79.4
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 8.2e-41 171.0 141 66.7
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.8e-40 169.9 122 69.7
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 2.6e-39 166.0 113 72.6
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.2e-38 162.9 122 66.4
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.9e-37 159.8 106 76.4
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.5e-37 159.5 186 51.6
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 5.5e-37 158.3 171 52.6
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 5.5e-37 158.3 171 52.6
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 5.5e-37 158.3 171 52.6
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 5.5e-37 158.3 171 52.6
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 5.5e-37 158.3 171 52.6
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 5.5e-37 158.3 171 52.6
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 5.5e-37 158.3 171 52.6
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 5.5e-37 158.3 171 52.6
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 2.7e-36 156.0 134 60.4
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.5e-36 155.6 163 55.8
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 8.7e-35 151.0 171 49.7
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 2.5e-34 149.4 141 58.9
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.7e-33 145.6 169 53.8
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 6.3e-33 144.8 141 56.7
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 2.4e-32 142.9 163 51.5
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.1e-32 142.1 86 79.1
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 6.9e-32 141.4 170 48.2
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 4.5e-31 138.7 184 45.1
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 1.0e-30 137.5 88 77.3
Potri.012G047500 Populus trichocarpa HOM05D002578 ORTHO05D005154 1.3e-30 137.1 95 76.8
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 2.2e-30 136.3 97 68.0
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.1e-29 134.0 163 50.3
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 5.5e-29 131.7 149 50.3
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.7e-28 129.4 86 73.3
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 2.7e-28 129.4 143 49.7
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 1.5e-26 123.6 132 50.8
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.7e-25 120.2 118 55.9
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 4.8e-25 118.6 163 47.2
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 1.8e-24 116.7 86 68.6
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 2.4e-24 116.3 84 67.9
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 4.1e-24 115.5 72 80.6
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 1.5e-23 113.6 137 47.4
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.0e-23 113.2 67 83.6
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 6.5e-22 108.2 66 74.2
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 6.5e-22 108.2 96 60.4
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.4e-21 107.1 62 85.5
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 1.4e-21 107.1 67 79.1
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 1.4e-21 107.1 67 79.1
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.9e-21 106.7 82 64.6
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.2e-21 105.9 67 77.6
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 3.6e-20 102.4 86 60.5
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 1.3e-17 94.0 67 70.1
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 1.3e-17 94.0 67 70.1
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 1.3e-17 94.0 67 70.1
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 4.8e-17 92.0 67 73.1
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.4e-16 89.7 63 68.3
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 6.9e-16 88.2 53 83.0
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 1.3e-14 84.0 196 32.1
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 3.8e-14 82.4 53 75.5
Migut.D01327 Erythranthe guttata HOM05D002578 ORTHO05D005154 1.9e-13 80.1 73 61.6
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 5.5e-13 78.6 42 90.5
CAN.G1078.3 Capsicum annuum HOM05D002578 ORTHO05D005154 8.0e-12 74.7 49 71.4
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 1.8e-11 73.6 48 77.1
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 1.8e-11 73.6 78 46.2
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.9e-11 72.4 68 57.4
Lsat_1_v5_gn_5_168100 Lactuca sativa HOM05D002578 ORTHO05D005154 3.9e-11 72.4 71 57.7
CAN.G134.2 Capsicum annuum HOM05D002578 ORTHO05D005154 1.1e-10 70.9 68 57.4
HanXRQChr16g0503681 Helianthus annuus HOM05D002578 ORTHO05D005154 1.1e-10 70.9 89 46.1
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.0e-10 70.1 76 50.0
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 2.0e-10 70.1 76 50.0
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 2.0e-10 70.1 76 50.0
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.0e-10 70.1 76 50.0
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 2.0e-10 70.1 76 50.0
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.0e-10 70.1 76 50.0
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.0e-10 70.1 76 50.0
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.0e-10 70.1 76 50.0
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.0e-10 70.1 76 50.0
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 2.6e-10 69.7 39 79.5
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 2.6e-10 69.7 74 51.4
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 4.4e-10 68.9 70 52.9
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 5.7e-10 68.6 76 50.0
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 7.4e-10 68.2 43 76.7
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 1.7e-09 67.0 76 47.4
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 2.2e-09 66.6 43 72.1
Solyc12g035880.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 6.3e-09 65.1 50 60.0
Lalb_Chr25g0282891 Lupinus albus HOM05D002578 ORTHO05D005154 8.2e-09 64.7 67 52.2
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 1.1e-08 64.3 65 49.2
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 7.0e-08 61.6 76 48.7
PGSC0003DMG400003499 Solanum tuberosum HOM05D002578 ORTHO05D005154 7.0e-08 61.6 60 55.0
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 1.2e-07 60.8 54 53.7
Solyc11g039530.2 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.6e-07 59.7 53 52.8


User provided reference genes

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