Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 0.0e+00 1186.4 574 100.0
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.6e-311 1072.0 574 90.4
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 1.3e-302 1042.3 559 90.3
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 1.5e-301 1038.9 577 87.5
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 3.3e-301 1037.7 574 87.3
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 1.8e-299 1031.9 574 86.9
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 4.0e-299 1030.8 574 87.3
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 9.0e-299 1029.6 574 87.1
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 7.6e-298 1026.5 574 86.9
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 6.4e-297 1023.5 565 87.3
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 3.5e-295 1017.7 564 86.3
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 6.0e-295 1016.9 564 86.5
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 6.6e-294 1013.4 560 87.7
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 6.6e-294 1013.4 559 86.6
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 7.3e-293 1010.0 558 86.7
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 7.6e-290 1000.0 570 84.0
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 2.9e-289 998.0 558 85.1
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 4.2e-288 994.2 565 83.7
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 9.3e-288 993.0 563 85.4
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 1.0e-286 989.6 558 84.2
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 9.6e-285 983.0 549 85.1
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 1.6e-284 982.2 534 87.3
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.8e-284 981.5 539 86.8
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 4.8e-284 980.7 557 83.8
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 6.2e-284 980.3 567 82.9
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 9.0e-283 976.5 571 82.0
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 9.0e-283 976.5 558 82.1
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.0e-281 973.0 558 83.3
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.2e-281 971.8 558 82.1
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 6.5e-281 970.3 565 82.3
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.5e-280 968.4 535 85.8
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.5e-280 968.4 558 83.0
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 9.3e-280 966.5 582 80.2
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 2.1e-279 965.3 558 82.4
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 4.6e-279 964.1 558 82.4
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.8e-278 962.2 558 81.9
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 3.0e-278 961.4 577 79.5
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 1.9e-277 958.7 555 82.3
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 7.4e-277 956.8 559 81.2
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.6e-276 955.7 545 81.1
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.6e-276 955.7 558 80.8
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.8e-276 954.9 524 85.7
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 4.8e-276 954.1 593 77.4
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 8.2e-276 953.4 572 79.2
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 1.1e-275 953.0 546 82.2
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 1.4e-275 952.6 575 79.0
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.8e-275 952.2 558 80.5
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.4e-275 951.8 575 78.4
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 2.4e-275 951.8 573 78.9
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 5.3e-275 950.7 572 79.9
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.0e-274 948.7 544 81.8
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 4.5e-274 947.6 556 79.5
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 5.8e-274 947.2 549 80.7
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 7.6e-274 946.8 572 79.7
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.3e-273 946.0 572 79.9
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 1.7e-273 945.7 549 81.4
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 1.1e-272 943.0 548 81.0
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 5.5e-272 940.6 555 79.8
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.2e-271 939.5 557 81.1
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 1.8e-270 935.6 562 78.5
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 3.9e-270 934.5 569 77.7
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 8.7e-270 933.3 547 80.6
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 8.7e-270 933.3 546 80.4
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.5e-269 931.8 556 78.4
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 1.3e-268 929.5 549 79.4
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 6.3e-268 927.2 556 78.4
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 1.1e-267 926.4 569 80.5
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.4e-267 926.0 555 78.2
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.2e-266 922.9 558 78.9
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.0e-266 922.2 554 77.4
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 2.6e-266 921.8 556 77.2
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 4.5e-266 921.0 556 78.8
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 4.5e-266 921.0 550 79.8
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 4.5e-266 921.0 557 77.2
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 5.9e-266 920.6 536 83.2
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 7.7e-266 920.2 593 77.1
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 1.7e-265 919.1 569 76.8
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 3.8e-265 917.9 554 77.4
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 6.5e-265 917.1 533 81.4
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.1e-264 916.4 558 77.8
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 3.2e-264 914.8 570 78.2
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 7.2e-264 913.7 553 77.4
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 1.6e-263 912.5 569 78.4
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 2.7e-263 911.8 517 82.6
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 4.6e-263 911.0 558 77.4
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 7.9e-263 910.2 544 78.3
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 1.8e-262 909.1 545 77.6
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 1.8e-262 909.1 553 77.6
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 1.8e-262 909.1 553 77.4
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 6.7e-262 907.1 535 78.3
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.1e-261 906.4 556 75.9
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 2.0e-258 895.6 544 77.8
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.4e-258 894.8 532 82.3
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 4.5e-258 894.4 557 76.1
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 7.7e-258 893.6 556 76.1
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 1.0e-257 893.3 558 77.1
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 6.5e-257 890.6 556 75.7
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 6.5e-257 890.6 556 75.7
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 8.5e-257 890.2 556 75.9
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 1.1e-256 889.8 556 75.5
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.4e-256 889.4 549 74.0
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 2.5e-256 888.6 549 77.0
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 2.5e-256 888.6 549 77.0
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 2.5e-256 888.6 558 76.5
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 4.2e-256 887.9 549 77.0
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 4.2e-256 887.9 524 80.9
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 7.9e-255 883.6 560 75.2
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.0e-254 883.2 559 75.3
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 8.8e-254 880.2 521 82.9
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 5.3e-251 870.9 560 74.6
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 2.0e-250 869.0 550 76.2
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.7e-247 858.6 518 77.8
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 3.0e-246 855.1 544 75.4
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 6.3e-244 847.4 542 76.4
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.5e-240 835.5 555 72.6
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 5.5e-240 834.3 495 80.2
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 9.8e-237 823.5 549 74.7
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 2.8e-236 822.0 542 73.8
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 3.7e-236 821.6 517 75.6
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.8e-233 811.6 515 75.9
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.4e-229 798.1 558 70.8
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 4.3e-224 781.6 564 67.4
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 9.5e-216 753.8 553 65.5
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.8e-213 744.6 478 75.3
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 5.1e-201 704.9 569 62.6
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.1e-200 703.7 591 60.7
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 2.8e-199 699.1 568 61.6
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 4.0e-198 695.3 416 79.8
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 8.6e-193 677.6 544 62.7
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.0e-153 547.7 335 80.0
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.7e-140 503.8 319 77.1
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 8.5e-140 501.5 278 83.5
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.2e-133 481.1 356 67.1
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 2.9e-132 476.5 263 89.4
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 1.4e-126 457.6 325 68.9
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 5.0e-124 449.1 514 49.6
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.2e-114 417.9 294 70.7
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.9e-103 380.2 217 76.5
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.6e-101 374.4 217 82.9
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 3.4e-96 356.7 291 59.8
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 2.4e-94 350.5 283 61.8
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.3e-84 317.4 251 64.5
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 8.4e-79 298.9 579 33.7
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 1.6e-77 294.7 198 72.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.4e-72 276.9 201 67.7
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.5e-64 251.5 145 77.9
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 8.7e-60 235.7 457 31.1
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.7e-55 221.5 131 80.9
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 4.2e-54 216.9 228 47.8
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 1.5e-35 155.2 130 60.0
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 7.4e-35 152.9 124 58.1
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 3.7e-34 150.6 100 70.0
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.6e-32 144.4 112 59.8
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 4.7e-29 133.7 106 58.5
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.1e-27 129.0 151 49.0
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 8.5e-23 112.8 54 87.0
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 1.4e-22 112.1 116 51.7
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 1.8e-17 95.1 67 64.2
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 7.0e-17 93.2 57 71.9
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 4.4e-11 73.9 43 76.7
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 2.2e-07 61.6 63 39.7
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 6.5e-07 60.1 70 35.7
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 1.9e-06 58.5 56 39.3
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 1.9e-06 58.5 58 41.4
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 1.9e-06 58.5 56 39.3
FvH4_1g03372 Fragaria vesca HOM05D012452 ORTHO05D017950 3.2e-06 57.8 56 39.3
FAN23G2234 Fragaria x ananassa HOM05D012452 ORTHO05D017950 3.2e-06 57.8 56 39.3
FAN28G2875 Fragaria x ananassa HOM05D012452 ORTHO05D017950 3.2e-06 57.8 56 39.3
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 3.2e-06 57.8 63 36.5
Gorai.004G005700 Gossypium raimondii HOM05D000082 ORTHO05D000038 7.2e-06 56.6 165 21.2
MBI07_g28241_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 7.2e-06 56.6 56 39.3
HPP92_020305 Vanilla planifolia HOM05D000459 ORTHO05D000798 7.2e-06 56.6 76 31.6
Cpa.g.sc17.216 Carica papaya HOM05D000082 ORTHO05D000038 9.4e-06 56.2 161 26.7
MBI15_g38537_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 9.4e-06 56.2 56 39.3


User provided reference genes

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