Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 1.8e-72 275.8 134 100.0
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 6.7e-72 273.9 133 99.2
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.1e-65 252.3 133 89.5
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.1e-65 252.3 133 89.5
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 1.4e-64 249.6 133 88.7
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 1.8e-64 249.2 133 87.2
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 5.2e-64 247.7 133 88.0
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.2e-64 247.7 133 88.0
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 8.8e-64 246.9 133 86.5
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 1.5e-63 246.1 133 88.0
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 3.3e-63 245.0 133 87.2
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 4.4e-63 244.6 133 88.0
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 4.4e-63 244.6 133 85.7
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 1.7e-62 242.7 133 85.7
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 2.2e-62 242.3 133 87.2
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 3.7e-62 241.5 133 87.2
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 4.8e-62 241.1 133 85.0
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 4.8e-62 241.1 133 85.0
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 4.8e-62 241.1 133 85.0
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 4.8e-62 241.1 133 85.0
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 4.8e-62 241.1 133 85.0
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 4.8e-62 241.1 133 85.0
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 8.2e-62 240.4 133 85.7
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.4e-61 239.6 133 85.7
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 1.4e-61 239.6 133 85.7
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 1.4e-61 239.6 133 85.7
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.4e-61 239.6 133 86.5
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 6.5e-59 230.7 133 82.7
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 1.9e-58 229.2 133 82.0
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 1.9e-58 229.2 133 82.0
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 1.9e-58 229.2 133 82.0
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 1.9e-58 229.2 133 82.0
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 2.5e-58 228.8 133 82.0
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 2.5e-58 228.8 133 82.0
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 2.5e-58 228.8 133 82.0
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 2.5e-58 228.8 133 82.0
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 2.5e-58 228.8 133 82.0
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 2.5e-58 228.8 133 82.0
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 4.2e-58 228.0 133 81.2
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 8.0e-57 223.8 119 87.4
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 8.0e-57 223.8 119 87.4
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.3e-56 222.2 133 80.5
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.3e-56 222.2 133 80.5
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 7.5e-55 217.2 119 84.9
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 3.7e-54 214.9 133 78.2
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 2.4e-53 212.2 133 78.2
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.5e-52 208.0 133 76.7
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.5e-52 208.0 133 76.7
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 3.2e-50 201.8 118 82.2
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 5.5e-50 201.1 133 75.2
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 7.2e-50 200.7 133 71.4
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.2e-49 199.9 133 74.4
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.1e-49 199.1 125 77.6
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 4.7e-49 198.0 106 87.7
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.5e-47 193.0 133 72.9
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 3.4e-47 191.8 102 86.3
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.7e-46 189.5 100 89.0
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 3.1e-45 185.3 106 83.0
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 3.5e-44 181.8 112 77.7
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 5.0e-43 177.9 98 86.7
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 2.5e-42 175.6 133 67.7
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.7e-41 171.4 103 80.6
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 6.1e-41 171.0 123 69.1
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 4.0e-40 168.3 112 74.1
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 6.8e-40 167.5 133 64.7
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.5e-39 166.4 133 63.9
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 6.4e-38 161.0 131 61.1
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 9.2e-37 157.1 136 53.7
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.7e-35 152.9 135 62.2
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 8.6e-35 150.6 88 79.5
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.2e-33 146.7 78 84.6
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 6.2e-33 144.4 128 47.7
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 5.2e-32 141.4 129 50.4
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 1.5e-31 139.8 68 91.2
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 7.5e-31 137.5 68 89.7
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 1.3e-30 136.7 134 56.0
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 2.9e-30 135.6 133 54.1
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 6.4e-30 134.4 68 91.2
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 6.4e-30 134.4 133 55.6
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 6.4e-30 134.4 70 85.7
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 1.9e-29 132.9 68 85.3
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 1.9e-29 132.9 68 85.3
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 1.9e-29 132.9 68 85.3
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.9e-29 132.9 68 86.8
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 3.2e-29 132.1 68 88.2
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 5.4e-29 131.3 68 85.3
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.0e-29 131.0 68 85.3
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-28 130.2 68 83.8
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 3.5e-28 128.6 72 84.7
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 4.6e-28 128.3 68 85.3
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 6.0e-28 127.9 131 51.1
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 1.7e-27 126.3 68 85.3
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 1.7e-27 126.3 68 85.3
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 5.0e-27 124.8 68 85.3
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 1.5e-26 123.2 64 87.5
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 6.2e-25 117.9 69 75.4
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.4e-24 116.7 84 66.7
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 6.8e-24 114.4 68 76.5
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 9.8e-23 110.5 80 63.8
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 2.9e-22 109.0 133 49.6
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 3.7e-22 108.6 75 66.7
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 6.4e-22 107.8 63 73.0
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-21 107.1 82 64.6
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 1.1e-21 107.1 67 67.2
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.9e-21 106.3 61 73.8
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 1.9e-21 106.3 111 52.3
MD15G1388400 Malus domestica HOM05D000806 ORTHO05D007429 5.4e-21 104.8 62 83.9
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.0e-19 99.0 69 73.9
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 3.9e-19 98.6 68 63.2
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 1.1e-18 97.1 71 70.4
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 1.1e-18 97.1 71 70.4
BolC9t55821H Brassica oleracea HOM05D000806 ORTHO05D007429 4.3e-18 95.1 60 73.3
BolSC29t60589H Brassica oleracea HOM05D000806 ORTHO05D007429 4.3e-18 95.1 60 75.0
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 5.6e-18 94.7 77 61.0
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 7.3e-18 94.4 79 58.2
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 1.6e-17 93.2 71 67.6
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 2.1e-17 92.8 133 41.4
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.8e-17 92.4 134 45.5
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 2.8e-17 92.4 124 45.2
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 3.6e-17 92.0 60 70.0
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.6e-17 92.0 117 47.9
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 3.6e-17 92.0 46 87.0
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 4.7e-17 91.7 45 88.9
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.7e-17 91.7 46 89.1
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.7e-17 91.7 46 89.1
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 4.7e-17 91.7 44 93.2
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 4.7e-17 91.7 45 88.9
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 6.2e-17 91.3 71 64.8
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 8.1e-17 90.9 133 41.4
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.3e-16 89.4 62 66.1
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.3e-16 89.4 62 66.1
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.3e-16 89.4 62 66.1
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.3e-16 89.4 62 66.1
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.3e-16 89.4 62 66.1
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 2.3e-16 89.4 44 88.6
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 3.1e-16 89.0 58 65.5
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 5.2e-16 88.2 46 80.4
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 5.2e-16 88.2 46 80.4
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-16 88.2 45 86.7
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-16 88.2 45 86.7
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-16 88.2 45 86.7
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-16 88.2 45 86.7
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-16 88.2 45 86.7
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 6.8e-16 87.8 45 80.0
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 1.5e-15 86.7 45 88.9
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 2.6e-15 85.9 72 63.9
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 3.4e-15 85.5 47 83.0
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 3.4e-15 85.5 46 80.4
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 4.4e-15 85.1 45 82.2
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 9.9e-15 84.0 71 60.6
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.7e-14 83.2 46 78.3
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.7e-14 83.2 46 78.3
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.9e-14 81.6 45 77.8
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 1.1e-13 80.5 68 58.8
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 1.4e-13 80.1 45 80.0
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.9e-13 79.7 58 62.1
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 7.1e-13 77.8 68 58.8
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 4.6e-12 75.1 47 70.2
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 6.6e-11 71.2 35 91.4
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.6e-10 68.2 36 86.1
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.8e-09 65.9 34 85.3
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 4.7e-09 65.1 32 90.6
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 4.7e-09 65.1 32 90.6
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 2.4e-08 62.8 32 84.4
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 6.4e-06 54.7 29 82.8


User provided reference genes

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