Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 6.4e-244 847.0 448 100.0
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 7.6e-221 770.4 448 91.5
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.5e-213 746.1 450 89.8
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.4e-209 733.0 449 88.4
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 2.5e-195 685.6 453 81.9
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 9.7e-192 673.7 451 80.9
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.9e-187 659.4 455 78.7
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.2e-187 658.7 457 78.3
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 2.7e-186 655.6 458 78.8
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.7e-186 655.6 456 78.3
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 2.0e-184 649.4 454 77.8
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 3.4e-184 648.7 465 78.3
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 7.5e-184 647.5 454 77.5
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 9.8e-184 647.1 454 76.4
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 2.7e-181 639.0 455 78.5
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 5.9e-181 637.9 453 76.8
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 5.9e-181 637.9 455 77.1
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.7e-180 636.3 457 75.9
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 8.6e-180 634.0 456 77.4
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 8.6e-180 634.0 457 75.9
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.9e-179 632.9 454 77.3
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.3e-179 632.1 454 77.5
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 3.3e-179 632.1 456 75.4
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 5.5e-179 631.3 453 76.6
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 7.2e-179 630.9 455 76.3
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.6e-178 629.8 451 74.9
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 6.1e-178 627.9 453 75.5
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 6.1e-178 627.9 454 75.8
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.8e-177 626.3 457 75.9
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.0e-177 625.5 453 76.2
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 4.0e-177 625.2 454 75.8
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 8.9e-177 624.0 455 75.4
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.2e-176 623.6 454 75.3
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 2.0e-176 622.9 451 76.3
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 5.7e-176 621.3 449 75.1
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 7.5e-176 620.9 457 74.8
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 9.8e-176 620.5 457 74.8
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 2.8e-175 619.0 451 74.9
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 3.7e-175 618.6 460 75.4
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 4.9e-175 618.2 456 73.7
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 8.3e-175 617.5 463 74.5
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 4.1e-174 615.1 457 74.0
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 5.4e-174 614.8 449 75.1
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.6e-173 613.2 451 75.8
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 3.5e-173 612.1 458 72.7
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 4.5e-173 611.7 455 74.5
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 7.8e-173 610.9 460 75.0
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.3e-172 610.1 455 74.3
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.7e-172 609.8 451 73.2
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 3.8e-172 608.6 463 73.7
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 3.8e-172 608.6 449 75.1
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 6.6e-172 607.8 455 74.1
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 2.1e-170 602.8 451 72.7
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 4.7e-170 601.7 456 72.8
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.4e-169 600.1 451 72.9
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.4e-169 600.1 452 72.8
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 2.3e-169 599.4 442 74.0
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 8.9e-169 597.4 452 71.9
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 2.0e-168 596.3 439 74.0
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 4.4e-168 595.1 450 70.9
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 4.4e-168 595.1 452 72.1
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.7e-167 593.2 456 71.3
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.2e-167 592.8 362 85.1
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.7e-167 592.0 430 76.0
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 7.0e-166 587.8 455 71.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 7.0e-166 587.8 454 70.0
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.2e-165 587.0 460 71.3
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.2e-165 587.0 465 70.1
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.7e-165 585.9 451 71.0
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.7e-165 585.9 457 71.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 3.5e-165 585.5 451 70.7
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 6.0e-165 584.7 451 71.0
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.0e-164 583.9 457 71.8
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.0e-164 583.9 457 71.8
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 3.0e-164 582.4 450 71.1
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 3.0e-164 582.4 450 71.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 3.0e-164 582.4 450 71.1
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 3.0e-164 582.4 452 71.0
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.3e-163 578.9 452 70.4
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 8.0e-162 574.3 458 69.7
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.8e-161 573.2 452 70.1
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.2e-160 570.5 455 70.5
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 2.6e-160 569.3 448 68.3
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 3.4e-160 568.9 458 69.4
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 7.5e-160 567.8 452 68.8
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.7e-159 566.6 448 68.3
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 4.9e-159 565.1 456 69.1
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.1e-158 563.9 458 70.3
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.9e-158 563.1 448 67.4
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 3.2e-158 562.4 453 67.1
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 5.4e-158 561.6 420 71.9
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.7e-157 559.3 457 69.4
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.7e-157 559.3 455 68.1
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.7e-157 559.3 455 68.1
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 3.9e-156 555.4 341 83.6
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 1.4e-153 547.0 444 66.7
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 3.1e-153 545.8 362 79.6
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 3.2e-150 535.8 402 71.6
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 6.0e-149 531.6 457 66.3
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 7.8e-149 531.2 363 74.1
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.1e-145 520.8 455 66.2
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 9.6e-139 497.7 307 85.7
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.0e-137 491.1 423 64.8
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 2.7e-133 479.6 311 80.4
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 7.8e-133 478.0 308 80.2
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 5.3e-129 465.3 290 84.5
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 6.4e-119 431.8 418 58.1
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 8.4e-119 431.4 411 58.4
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.6e-117 427.2 282 79.1
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.1e-115 421.0 376 61.7
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 1.6e-114 417.2 281 79.7
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 2.1e-114 416.8 371 59.6
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.8e-114 416.4 372 59.9
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 6.2e-114 415.2 295 74.6
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 5.3e-113 412.1 280 73.2
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.5e-110 403.3 371 57.4
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.6e-101 372.5 364 57.4
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.1e-100 369.0 366 56.0
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 8.2e-98 361.7 323 61.9
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.3e-95 354.4 336 58.3
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.5e-94 350.1 378 54.2
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 2.5e-94 350.1 361 53.5
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.2e-93 347.8 381 52.5
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 2.4e-89 333.6 369 52.8
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.1e-83 314.7 383 47.0
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 5.7e-83 312.4 243 70.0
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 2.7e-72 276.9 332 51.8
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-54 218.4 345 43.2
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 4.0e-52 209.9 150 71.3
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 4.7e-45 186.4 222 51.4
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-39 168.3 127 66.9
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-38 165.2 164 54.3
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 4.1e-33 146.7 168 50.0
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.1e-33 146.0 83 83.1
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.7e-31 141.4 113 63.7
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.5e-30 138.3 171 48.5
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.2e-24 118.6 73 84.9
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-20 105.5 87 69.0
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.1e-14 85.5 102 48.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 6.2e-13 79.7 75 50.7
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.8e-10 70.5 89 49.4
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.1e-09 68.9 165 33.3


User provided reference genes

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