Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.6e-195 687.2 840 100.0
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 5.3e-98 363.2 239 90.0
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.5e-97 361.7 213 88.3
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 2.9e-96 357.5 208 89.9
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.1e-95 355.5 213 86.9
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 9.3e-95 352.4 213 86.9
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.2e-94 352.1 459 64.1
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 1.6e-94 351.7 263 82.1
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.7e-94 350.9 207 87.9
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 4.6e-94 350.1 212 85.8
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 4.6e-94 350.1 210 86.7
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 4.6e-94 350.1 209 87.6
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 6.0e-94 349.7 213 85.9
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 1.0e-93 349.0 210 86.7
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 1.3e-93 348.6 418 64.8
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 2.3e-93 347.8 221 84.6
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 3.9e-93 347.1 261 79.7
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 3.9e-93 347.1 208 87.5
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 3.9e-93 347.1 212 85.4
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 6.7e-93 346.3 205 87.8
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 8.7e-93 345.9 213 85.0
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 1.1e-92 345.5 209 87.1
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.5e-92 345.1 205 88.3
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 3.3e-92 344.0 210 86.7
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 4.3e-92 343.6 206 87.4
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 5.7e-92 343.2 213 84.0
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 7.4e-92 342.8 204 88.7
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.3e-91 342.0 210 86.2
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 1.3e-91 342.0 358 71.5
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.1e-91 341.3 210 85.2
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.1e-91 341.3 210 85.2
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 2.8e-91 340.9 217 84.3
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 4.8e-91 340.1 203 88.7
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.3e-91 339.7 212 83.0
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 8.2e-91 339.3 212 82.5
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 8.2e-91 339.3 212 83.0
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 8.2e-91 339.3 212 83.0
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 8.2e-91 339.3 209 84.2
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.8e-90 338.2 211 83.4
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 2.4e-90 337.8 208 84.1
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 2.4e-90 337.8 211 83.4
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 2.4e-90 337.8 430 65.8
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 3.1e-90 337.4 212 82.1
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 5.3e-90 336.7 205 86.8
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 5.3e-90 336.7 206 85.0
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 6.9e-90 336.3 209 82.8
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 1.2e-89 335.5 412 65.8
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.2e-89 335.5 208 83.7
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.5e-89 335.1 208 83.7
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 2.0e-89 334.7 209 82.8
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.0e-89 334.7 209 83.3
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 2.6e-89 334.3 209 82.3
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 2.6e-89 334.3 362 74.3
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 2.6e-89 334.3 205 83.9
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.6e-89 334.3 204 85.3
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.6e-89 334.3 385 63.1
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 3.4e-89 334.0 211 82.0
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 4.5e-89 333.6 210 83.8
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 4.5e-89 333.6 204 86.3
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 5.9e-89 333.2 204 85.3
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.0e-88 332.4 206 83.5
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.7e-88 331.6 209 82.3
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.7e-88 331.6 209 82.3
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 5.0e-88 330.1 208 83.7
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 5.0e-88 330.1 411 64.0
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 6.5e-88 329.7 213 82.2
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 3.2e-87 327.4 435 63.2
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 5.5e-87 326.6 352 69.6
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 7.2e-87 326.2 367 64.0
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 9.3e-87 325.9 456 55.7
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 1.2e-86 325.5 200 84.5
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 3.6e-86 323.9 205 82.4
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 3.6e-86 323.9 356 66.9
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 4.6e-86 323.6 212 79.7
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 7.9e-86 322.8 205 82.4
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 1.3e-85 322.0 248 73.0
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 2.3e-85 321.2 192 88.0
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.9e-84 318.2 420 58.1
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.9e-84 318.2 361 65.9
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.3e-84 317.4 425 62.8
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.7e-84 316.6 477 54.9
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 5.7e-84 316.6 205 81.0
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 9.7e-84 315.8 205 80.5
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 3.7e-83 313.9 447 55.3
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 4.8e-83 313.5 197 84.3
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 4.8e-83 313.5 213 77.5
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 6.3e-83 313.2 365 64.9
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 8.2e-83 312.8 192 84.9
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 5.3e-82 310.1 206 77.7
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 9.1e-82 309.3 197 83.2
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.2e-81 308.9 210 78.6
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 3.4e-81 307.4 249 80.7
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 3.9e-77 293.9 186 82.8
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.3e-75 288.9 185 80.0
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 3.4e-73 280.8 387 64.9
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 4.5e-73 280.4 206 69.9
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 3.8e-72 277.3 205 68.3
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 6.1e-70 270.0 203 68.0
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 1.4e-69 268.9 218 69.7
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 8.8e-69 266.2 196 70.4
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 4.4e-68 263.8 198 72.2
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 3.5e-65 254.2 157 86.6
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.2e-63 247.7 188 72.3
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 1.0e-61 242.7 178 75.3
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 6.7e-61 240.0 443 45.8
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.0e-57 228.4 167 75.4
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 6.8e-53 213.4 195 60.5
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.7e-41 174.9 142 62.7
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 2.5e-31 141.7 90 80.0
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 6.8e-29 133.7 103 73.8
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 6.8e-29 133.7 104 62.5
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.3e-27 129.4 199 42.2
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 2.0e-25 122.1 76 80.3
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 4.6e-25 120.9 82 80.5
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 3.0e-24 118.2 76 77.6
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.1e-23 116.3 63 88.9
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 9.5e-23 113.2 201 36.3
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 1.1e-21 109.8 64 85.9
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.5e-17 94.7 56 83.9
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.6e-17 94.4 107 49.5
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 7.8e-17 93.6 63 76.2
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 7.8e-17 93.6 62 72.6
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.7e-16 92.4 180 36.7
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 5.1e-16 90.9 71 66.2
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.1e-15 89.7 59 74.6
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.2e-14 86.3 168 35.7
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 1.8e-13 82.4 142 33.1
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 1.8e-13 82.4 142 33.1
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 6.8e-13 80.5 52 75.0
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 4.4e-12 77.8 159 35.8
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 2.7e-09 68.6 63 61.9
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 1.5e-07 62.8 36 80.6
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 2.5e-07 62.0 35 82.9


User provided reference genes

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